Gcaud7816.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7816.t1
Unique NameGcaud7816.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length111
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_213_length_36751_cov_4.280933contigNODE_213_length_36751_cov_4.280933:28318..28840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7816Gcaud7816Gracilaria caudata M_176_S67 malegeneNODE_213_length_36751_cov_4.280933 28318..28840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7816.t1Gcaud7816.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_213_length_36751_cov_4.280933 28318..28840 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7816.t1.stop1Gcaud7816.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_213_length_36751_cov_4.280933 28318..28320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7816.t1.CDS1Gcaud7816.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_213_length_36751_cov_4.280933 28318..28413 -
Gcaud7816.t1.CDS2Gcaud7816.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_213_length_36751_cov_4.280933 28523..28535 -
Gcaud7816.t1.CDS3Gcaud7816.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_213_length_36751_cov_4.280933 28617..28840 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7816.t1.exon1Gcaud7816.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_213_length_36751_cov_4.280933 28318..28413 -
Gcaud7816.t1.exon2Gcaud7816.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_213_length_36751_cov_4.280933 28523..28535 -
Gcaud7816.t1.exon3Gcaud7816.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_213_length_36751_cov_4.280933 28617..28840 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7816.t1.intron1Gcaud7816.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_213_length_36751_cov_4.280933 28414..28522 -
Gcaud7816.t1.intron2Gcaud7816.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_213_length_36751_cov_4.280933 28536..28616 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7816.t1.start1Gcaud7816.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_213_length_36751_cov_4.280933 28838..28840 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7816.t1 ID=Gcaud7816.t1|Name=Gcaud7816.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=111bp
MPTRRARRRGDWARRLVRSPSQSSDSDNFACDSSSSGDSLSVQDFSPHPD
ACVSPLRSRRSFTPPLDVRSVSFPDSNSPIRFDINNPNRFHNLIKHRRPR
LSVVSIICAN*
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spliced messenger RNA

>Gcaud7816.t1 ID=Gcaud7816.t1|Name=Gcaud7816.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=333bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:28318..28840- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACGCGTCGCGCGCGCCGTCGAGGTGACTGGGCGCGTCGGCTCGT
TCGCTCCCCGTCCCAAAGCAGTGATTCCGACAACTTTGCATGTGATTCAT
CCTCTTCCGGTGATTCGCTCAGTGTTCAGGATTTCTCGCCGCATCCGGAC
GCGTGTGTGTCTCCGTTACGTTCTAGAAGGTCATTCACTCCGCCATTAGA
CGTTCGAAGCGTTTCATTTCCAGATTCAAACTCTCCGATTCGTTTCGACA
TCAACAATCCGAACCGATTTCACAATCTTATCAAACACCGCCGACCACGC
CTAAGCGTGGTCAGCATAATATGCGCAAATTAG
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protein sequence of Gcaud7816.t1

>Gcaud7816.t1 ID=Gcaud7816.t1|Name=Gcaud7816.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=111bp
MPTRRARRRGDWARRLVRSPSQSSDSDNFACDSSSSGDSLSVQDFSPHPD
ACVSPLRSRRSFTPPLDVRSVSFPDSNSPIRFDINNPNRFHNLIKHRRPR
LSVVSIICAN*
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mRNA from alignment at NODE_213_length_36751_cov_4.280933:28318..28840-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7816.t1 ID=Gcaud7816.t1|Name=Gcaud7816.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=523bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:28318..28840- (Gracilaria caudata M_176_S67 male)
ATGCCGACGCGTCGCGCGCGCCGTCGAGGTGACTGGGCGCGTCGGCTCGT
TCGCTCCCCGTCCCAAAGCAGTGATTCCGACAACTTTGCATGTGATTCAT
CCTCTTCCGGTGATTCGCTCAGTGTTCAGGATTTCTCGCCGCATCCGGAC
GCGTGTGTGTCTCCGTTACGTTCTAGAAGGTCATTCACTCCGCCATTAGA
CGTTCGAAGCGTTTCATTTCCAGAGTATGCAGCCACCGAACTTCCTGATC
TGGCCATATTGTTTCGTCGATTCTTACCGCCACTCTCGCCTCTGTCGTCG
TCTAGTTCAAACTCTCCGGTATTGTCACCGCGTTTGTCGCGTGCCGTTTC
TTCGCCTTCTGGCAATCGCTCGCGCGCTGTGCGTGCAGCATCAACTGTGA
GTAATGCGTTGCCACCTACATTTCCAGATTCGTTTCGACATCAACAATCC
GAACCGATTTCACAATCTTATCAAACACCGCCGACCACGCCTAAGCGTGG
TCAGCATAATATGCGCAAATTAG
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Coding sequence (CDS) from alignment at NODE_213_length_36751_cov_4.280933:28318..28840-

>Gcaud7816.t1 ID=Gcaud7816.t1|Name=Gcaud7816.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=333bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:28318..28840- (Gracilaria caudata M_176_S67 male)
ATGCCGACGCGTCGCGCGCGCCGTCGAGGTGACTGGGCGCGTCGGCTCGT
TCGCTCCCCGTCCCAAAGCAGTGATTCCGACAACTTTGCATGTGATTCAT
CCTCTTCCGGTGATTCGCTCAGTGTTCAGGATTTCTCGCCGCATCCGGAC
GCGTGTGTGTCTCCGTTACGTTCTAGAAGGTCATTCACTCCGCCATTAGA
CGTTCGAAGCGTTTCATTTCCAGATTCAAACTCTCCGATTCGTTTCGACA
TCAACAATCCGAACCGATTTCACAATCTTATCAAACACCGCCGACCACGC
CTAAGCGTGGTCAGCATAATATGCGCAAATTAG
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