Gcaud7815.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7815.t1
Unique Name	Gcaud7815.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	487

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_213_length_36751_cov_4.280933	contig	NODE_213_length_36751_cov_4.280933:26079..27539 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	65071.PYU1_T007291
Max annot lvl	121069\|Pythiales
Evalue	1.27e-09
EggNOG OGs	2E9IX@1\|root,2SFWJ@2759\|Eukaryota,1MDY8@121069\|Pythiales
Description	function. Source PGD
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7815	Gcaud7815	Gracilaria caudata M_176_S67 male	gene	NODE_213_length_36751_cov_4.280933 26079..27539 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7815.t1.stop1	Gcaud7815.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_213_length_36751_cov_4.280933 26079..26081 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7815.t1.CDS1	Gcaud7815.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_213_length_36751_cov_4.280933 26079..27539 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7815.t1.exon1	Gcaud7815.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_213_length_36751_cov_4.280933 26079..27539 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7815.t1.start1	Gcaud7815.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_213_length_36751_cov_4.280933 27537..27539 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7815.t1	Gcaud7815.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_213_length_36751_cov_4.280933 26079..27539 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_213_length_36751_cov_4.280933:26079..27539-
coding sequence from alignment at NODE_213_length_36751_cov_4.280933:26079..27539-

mRNA sequence

>Gcaud7815.t1 ID=Gcaud7815.t1|Name=Gcaud7815.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=487bp
MAGGRRPSSYVSGARHSSGIDRQSVQEAHVSPPLVSTTGPSLPPWIPSIW
QPAPMQSPTPRVVREKQTTVDPSSVLAAALDTAVQSAVERALGAAPPAAT
STSQLTASSSNSENGTEDESSQPLTQRENELLDLVVALKSRLQQRDDDIA
SLQNRMDSLEQHLRLNQTAAHTHQQQFESTTSNLAKQISDATSHLENRFE
ARFAAVKDQLKSTQESVHRLGSHDSDIAHLTSRSRQLTSDLFKFRTHVST
ELEKYASKMRQYEQTSKAISDRLASIVADTSSSTPDVEQLRRSVEAATES
LATVRSKVKRVEVQVSEVSKQAEDSVALSSAFEEGIRAGLDDITKTVSSL
HCTVREIKKNLPPNSDDTGSTNTSCSELTSKVDALETNLKQFKRLIESNL
RNQLSAEGIVKEQVSLITKHVCVAMRQYTARRISENNALIDKALRARIPE
YAKNDGQFVLVREEDLEGNESVGIHRSSHEPTRAQS*

spliced messenger RNA

>Gcaud7815.t1 ID=Gcaud7815.t1|Name=Gcaud7815.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:26079..27539- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGAGGTCGTCGTCCGTCCAGTTATGTCTCCGGTGCTCGACATAG
CTCCGGAATCGACCGCCAGTCCGTGCAGGAGGCGCATGTCAGTCCGCCAT
TAGTCTCTACCACCGGACCTTCGTTACCGCCTTGGATTCCTTCAATATGG
CAACCTGCGCCCATGCAATCTCCCACTCCACGCGTCGTGAGGGAAAAACA
AACGACTGTCGACCCTTCCTCCGTGCTTGCCGCTGCGCTTGACACTGCCG
TTCAGTCTGCTGTGGAACGTGCCTTGGGTGCCGCTCCACCGGCTGCCACC
TCTACCTCACAGCTTACTGCGTCTTCTTCGAATTCTGAAAACGGAACTGA
AGATGAGTCTTCTCAACCTCTGACGCAGCGCGAGAATGAATTGCTTGACC
TAGTGGTCGCCCTCAAGTCGCGTTTGCAACAACGTGACGATGACATTGCC
TCTTTGCAAAACCGAATGGACTCGCTAGAGCAACATTTGCGACTCAATCA
AACCGCGGCTCACACCCATCAACAGCAATTTGAGTCTACTACCTCCAATC
TTGCAAAGCAAATTTCCGACGCTACTTCGCATCTGGAGAACCGTTTTGAG
GCTCGCTTTGCTGCTGTCAAGGATCAATTGAAATCTACGCAAGAATCTGT
GCACAGATTAGGAAGCCACGACTCTGATATTGCTCATCTTACTTCTCGTT
CTCGTCAGCTCACTTCAGACCTTTTCAAGTTTCGTACACACGTCTCGACT
GAACTCGAGAAATATGCTTCCAAAATGCGGCAATATGAGCAGACTTCTAA
AGCCATCTCTGACCGGTTGGCCTCTATTGTTGCCGATACCTCTTCGTCAA
CTCCAGATGTTGAACAACTACGACGAAGTGTGGAGGCCGCCACCGAGAGT
TTGGCTACTGTACGTTCTAAGGTTAAGAGGGTGGAAGTGCAGGTCAGCGA
GGTGTCCAAACAGGCTGAAGATTCTGTTGCTCTTAGCAGTGCGTTTGAAG
AAGGTATTCGTGCGGGGCTCGATGATATTACCAAGACTGTTTCATCTTTG
CATTGTACAGTAAGGGAGATAAAGAAAAACCTTCCGCCGAACTCAGATGA
TACAGGGTCAACCAACACGTCATGTAGTGAGTTGACGTCGAAGGTTGATG
CTCTTGAGACAAATCTCAAACAATTCAAGAGATTGATTGAGTCAAATCTT
CGTAACCAGTTGAGTGCCGAAGGTATAGTCAAGGAACAGGTCTCGCTTAT
TACAAAACATGTATGCGTTGCAATGCGCCAATATACTGCTCGTCGTATAT
CTGAAAACAATGCTCTCATAGATAAGGCTTTAAGGGCGCGTATTCCGGAG
TATGCAAAGAACGACGGTCAGTTTGTGCTGGTGAGGGAAGAGGACTTGGA
AGGAAATGAGTCTGTTGGAATTCATAGATCATCACATGAACCAACTCGGG
CACAGTCGTAG

protein sequence of Gcaud7815.t1

>Gcaud7815.t1 ID=Gcaud7815.t1|Name=Gcaud7815.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=487bp
MAGGRRPSSYVSGARHSSGIDRQSVQEAHVSPPLVSTTGPSLPPWIPSIW
QPAPMQSPTPRVVREKQTTVDPSSVLAAALDTAVQSAVERALGAAPPAAT
STSQLTASSSNSENGTEDESSQPLTQRENELLDLVVALKSRLQQRDDDIA
SLQNRMDSLEQHLRLNQTAAHTHQQQFESTTSNLAKQISDATSHLENRFE
ARFAAVKDQLKSTQESVHRLGSHDSDIAHLTSRSRQLTSDLFKFRTHVST
ELEKYASKMRQYEQTSKAISDRLASIVADTSSSTPDVEQLRRSVEAATES
LATVRSKVKRVEVQVSEVSKQAEDSVALSSAFEEGIRAGLDDITKTVSSL
HCTVREIKKNLPPNSDDTGSTNTSCSELTSKVDALETNLKQFKRLIESNL
RNQLSAEGIVKEQVSLITKHVCVAMRQYTARRISENNALIDKALRARIPE
YAKNDGQFVLVREEDLEGNESVGIHRSSHEPTRAQS*

mRNA from alignment at NODE_213_length_36751_cov_4.280933:26079..27539-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7815.t1 ID=Gcaud7815.t1|Name=Gcaud7815.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:26079..27539- (Gracilaria caudata M_176_S67 male)
ATGGCAGGAGGTCGTCGTCCGTCCAGTTATGTCTCCGGTGCTCGACATAG
CTCCGGAATCGACCGCCAGTCCGTGCAGGAGGCGCATGTCAGTCCGCCAT
TAGTCTCTACCACCGGACCTTCGTTACCGCCTTGGATTCCTTCAATATGG
CAACCTGCGCCCATGCAATCTCCCACTCCACGCGTCGTGAGGGAAAAACA
AACGACTGTCGACCCTTCCTCCGTGCTTGCCGCTGCGCTTGACACTGCCG
TTCAGTCTGCTGTGGAACGTGCCTTGGGTGCCGCTCCACCGGCTGCCACC
TCTACCTCACAGCTTACTGCGTCTTCTTCGAATTCTGAAAACGGAACTGA
AGATGAGTCTTCTCAACCTCTGACGCAGCGCGAGAATGAATTGCTTGACC
TAGTGGTCGCCCTCAAGTCGCGTTTGCAACAACGTGACGATGACATTGCC
TCTTTGCAAAACCGAATGGACTCGCTAGAGCAACATTTGCGACTCAATCA
AACCGCGGCTCACACCCATCAACAGCAATTTGAGTCTACTACCTCCAATC
TTGCAAAGCAAATTTCCGACGCTACTTCGCATCTGGAGAACCGTTTTGAG
GCTCGCTTTGCTGCTGTCAAGGATCAATTGAAATCTACGCAAGAATCTGT
GCACAGATTAGGAAGCCACGACTCTGATATTGCTCATCTTACTTCTCGTT
CTCGTCAGCTCACTTCAGACCTTTTCAAGTTTCGTACACACGTCTCGACT
GAACTCGAGAAATATGCTTCCAAAATGCGGCAATATGAGCAGACTTCTAA
AGCCATCTCTGACCGGTTGGCCTCTATTGTTGCCGATACCTCTTCGTCAA
CTCCAGATGTTGAACAACTACGACGAAGTGTGGAGGCCGCCACCGAGAGT
TTGGCTACTGTACGTTCTAAGGTTAAGAGGGTGGAAGTGCAGGTCAGCGA
GGTGTCCAAACAGGCTGAAGATTCTGTTGCTCTTAGCAGTGCGTTTGAAG
AAGGTATTCGTGCGGGGCTCGATGATATTACCAAGACTGTTTCATCTTTG
CATTGTACAGTAAGGGAGATAAAGAAAAACCTTCCGCCGAACTCAGATGA
TACAGGGTCAACCAACACGTCATGTAGTGAGTTGACGTCGAAGGTTGATG
CTCTTGAGACAAATCTCAAACAATTCAAGAGATTGATTGAGTCAAATCTT
CGTAACCAGTTGAGTGCCGAAGGTATAGTCAAGGAACAGGTCTCGCTTAT
TACAAAACATGTATGCGTTGCAATGCGCCAATATACTGCTCGTCGTATAT
CTGAAAACAATGCTCTCATAGATAAGGCTTTAAGGGCGCGTATTCCGGAG
TATGCAAAGAACGACGGTCAGTTTGTGCTGGTGAGGGAAGAGGACTTGGA
AGGAAATGAGTCTGTTGGAATTCATAGATCATCACATGAACCAACTCGGG
CACAGTCGTAG

Coding sequence (CDS) from alignment at NODE_213_length_36751_cov_4.280933:26079..27539-

>Gcaud7815.t1 ID=Gcaud7815.t1|Name=Gcaud7815.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1461bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:26079..27539- (Gracilaria caudata M_176_S67 male)
ATGGCAGGAGGTCGTCGTCCGTCCAGTTATGTCTCCGGTGCTCGACATAG
CTCCGGAATCGACCGCCAGTCCGTGCAGGAGGCGCATGTCAGTCCGCCAT
TAGTCTCTACCACCGGACCTTCGTTACCGCCTTGGATTCCTTCAATATGG
CAACCTGCGCCCATGCAATCTCCCACTCCACGCGTCGTGAGGGAAAAACA
AACGACTGTCGACCCTTCCTCCGTGCTTGCCGCTGCGCTTGACACTGCCG
TTCAGTCTGCTGTGGAACGTGCCTTGGGTGCCGCTCCACCGGCTGCCACC
TCTACCTCACAGCTTACTGCGTCTTCTTCGAATTCTGAAAACGGAACTGA
AGATGAGTCTTCTCAACCTCTGACGCAGCGCGAGAATGAATTGCTTGACC
TAGTGGTCGCCCTCAAGTCGCGTTTGCAACAACGTGACGATGACATTGCC
TCTTTGCAAAACCGAATGGACTCGCTAGAGCAACATTTGCGACTCAATCA
AACCGCGGCTCACACCCATCAACAGCAATTTGAGTCTACTACCTCCAATC
TTGCAAAGCAAATTTCCGACGCTACTTCGCATCTGGAGAACCGTTTTGAG
GCTCGCTTTGCTGCTGTCAAGGATCAATTGAAATCTACGCAAGAATCTGT
GCACAGATTAGGAAGCCACGACTCTGATATTGCTCATCTTACTTCTCGTT
CTCGTCAGCTCACTTCAGACCTTTTCAAGTTTCGTACACACGTCTCGACT
GAACTCGAGAAATATGCTTCCAAAATGCGGCAATATGAGCAGACTTCTAA
AGCCATCTCTGACCGGTTGGCCTCTATTGTTGCCGATACCTCTTCGTCAA
CTCCAGATGTTGAACAACTACGACGAAGTGTGGAGGCCGCCACCGAGAGT
TTGGCTACTGTACGTTCTAAGGTTAAGAGGGTGGAAGTGCAGGTCAGCGA
GGTGTCCAAACAGGCTGAAGATTCTGTTGCTCTTAGCAGTGCGTTTGAAG
AAGGTATTCGTGCGGGGCTCGATGATATTACCAAGACTGTTTCATCTTTG
CATTGTACAGTAAGGGAGATAAAGAAAAACCTTCCGCCGAACTCAGATGA
TACAGGGTCAACCAACACGTCATGTAGTGAGTTGACGTCGAAGGTTGATG
CTCTTGAGACAAATCTCAAACAATTCAAGAGATTGATTGAGTCAAATCTT
CGTAACCAGTTGAGTGCCGAAGGTATAGTCAAGGAACAGGTCTCGCTTAT
TACAAAACATGTATGCGTTGCAATGCGCCAATATACTGCTCGTCGTATAT
CTGAAAACAATGCTCTCATAGATAAGGCTTTAAGGGCGCGTATTCCGGAG
TATGCAAAGAACGACGGTCAGTTTGTGCTGGTGAGGGAAGAGGACTTGGA
AGGAAATGAGTCTGTTGGAATTCATAGATCATCACATGAACCAACTCGGG
CACAGTCGTAG