Gcaud7804.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7804.t1
Unique NameGcaud7804.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_213_length_36751_cov_4.280933contigNODE_213_length_36751_cov_4.280933:3248..4063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706980.1
PFAMsFA_hydroxylase
Max annot lvl2759|Eukaryota
KEGG koko:K22282
Evalue1.34e-40
EggNOG OGs2D20X@1|root,2SK19@2759|Eukaryota
DescriptionFatty acid hydroxylase superfamily
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7804Gcaud7804Gracilaria caudata M_176_S67 malegeneNODE_213_length_36751_cov_4.280933 3248..4063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7804.t1Gcaud7804.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_213_length_36751_cov_4.280933 3248..4063 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7804.t1.stop1Gcaud7804.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_213_length_36751_cov_4.280933 3248..3250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7804.t1.CDS1Gcaud7804.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_213_length_36751_cov_4.280933 3248..3827 -
Gcaud7804.t1.CDS2Gcaud7804.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_213_length_36751_cov_4.280933 3927..4063 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7804.t1.exon1Gcaud7804.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_213_length_36751_cov_4.280933 3248..3827 -
Gcaud7804.t1.exon2Gcaud7804.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_213_length_36751_cov_4.280933 3927..4063 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7804.t1.intron1Gcaud7804.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_213_length_36751_cov_4.280933 3828..3926 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7804.t1.start1Gcaud7804.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_213_length_36751_cov_4.280933 4061..4063 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7804.t1 ID=Gcaud7804.t1|Name=Gcaud7804.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=239bp
MMTPGLLAWTQFMLTYHAACLFFHMLDRRKLLQRHKAFRSSPELPTSEPS
VITSWLALCALAPLLHEVPFYLGHRFILHSPRGVARFGHALHHSAKAHCA
ISAMYMYSFDFLLEIVLPYVVPLVVLRHARMLSEAHASWLLALGSLGGLY
EHSGYNFVPNVWSFDTRIHGMHHVYYSCSFADGVGAPSLLDHALHTACGS
VGAPALAARKLITWLSPSHSHSTSAVVTQPLSAEDKTK*
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spliced messenger RNA

>Gcaud7804.t1 ID=Gcaud7804.t1|Name=Gcaud7804.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=717bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:3248..4063- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGACCCCGGGACTGTTGGCTTGGACGCAGTTTATGCTCACGTACCA
TGCCGCGTGCTTGTTCTTCCACATGCTTGATCGCAGGAAGCTGCTGCAGC
GCCACAAGGCGTTTCGTTCTAGCCCGGAGCTTCCGACATCAGAACCGAGC
GTAATCACCTCCTGGCTGGCGCTTTGTGCGCTCGCGCCGCTGCTACATGA
GGTGCCATTCTACCTGGGGCACCGCTTCATCCTGCATTCACCGCGCGGCG
TGGCGCGCTTTGGACACGCGCTCCACCACTCCGCCAAGGCGCACTGCGCA
ATCTCCGCCATGTACATGTACTCGTTCGACTTCTTGCTTGAAATCGTGCT
CCCGTACGTGGTACCACTCGTGGTACTTCGCCACGCGCGAATGCTAAGTG
AGGCGCATGCAAGTTGGTTGCTGGCGCTTGGCTCGTTGGGCGGACTTTAC
GAACACTCTGGCTACAACTTTGTGCCCAACGTGTGGTCATTTGACACACG
AATCCATGGCATGCATCATGTGTACTACTCGTGTTCGTTCGCCGACGGCG
TGGGCGCGCCCAGTCTGTTGGATCACGCTCTGCACACCGCGTGCGGCAGT
GTAGGTGCGCCGGCACTTGCCGCAAGAAAGCTCATCACTTGGCTGTCGCC
GTCGCATTCGCATTCCACCAGCGCCGTCGTTACCCAACCGCTCTCGGCCG
AAGACAAGACGAAGTGA
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protein sequence of Gcaud7804.t1

>Gcaud7804.t1 ID=Gcaud7804.t1|Name=Gcaud7804.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=239bp
MMTPGLLAWTQFMLTYHAACLFFHMLDRRKLLQRHKAFRSSPELPTSEPS
VITSWLALCALAPLLHEVPFYLGHRFILHSPRGVARFGHALHHSAKAHCA
ISAMYMYSFDFLLEIVLPYVVPLVVLRHARMLSEAHASWLLALGSLGGLY
EHSGYNFVPNVWSFDTRIHGMHHVYYSCSFADGVGAPSLLDHALHTACGS
VGAPALAARKLITWLSPSHSHSTSAVVTQPLSAEDKTK*
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mRNA from alignment at NODE_213_length_36751_cov_4.280933:3248..4063-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7804.t1 ID=Gcaud7804.t1|Name=Gcaud7804.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:3248..4063- (Gracilaria caudata M_176_S67 male)
ATGATGACCCCGGGACTGTTGGCTTGGACGCAGTTTATGCTCACGTACCA
TGCCGCGTGCTTGTTCTTCCACATGCTTGATCGCAGGAAGCTGCTGCAGC
GCCACAAGGCGTTTCGTTCTAGCCCGGAGCTTCCGACGTACGTGGTCATG
CTACCCCGCGTGCTGTTCAACCAAACGTTCATCATGTTGCCCATCATGCT
GCTCATCTTTCCCTTCACCACCGCCACTCACGACAGATCAGAACCGAGCG
TAATCACCTCCTGGCTGGCGCTTTGTGCGCTCGCGCCGCTGCTACATGAG
GTGCCATTCTACCTGGGGCACCGCTTCATCCTGCATTCACCGCGCGGCGT
GGCGCGCTTTGGACACGCGCTCCACCACTCCGCCAAGGCGCACTGCGCAA
TCTCCGCCATGTACATGTACTCGTTCGACTTCTTGCTTGAAATCGTGCTC
CCGTACGTGGTACCACTCGTGGTACTTCGCCACGCGCGAATGCTAAGTGA
GGCGCATGCAAGTTGGTTGCTGGCGCTTGGCTCGTTGGGCGGACTTTACG
AACACTCTGGCTACAACTTTGTGCCCAACGTGTGGTCATTTGACACACGA
ATCCATGGCATGCATCATGTGTACTACTCGTGTTCGTTCGCCGACGGCGT
GGGCGCGCCCAGTCTGTTGGATCACGCTCTGCACACCGCGTGCGGCAGTG
TAGGTGCGCCGGCACTTGCCGCAAGAAAGCTCATCACTTGGCTGTCGCCG
TCGCATTCGCATTCCACCAGCGCCGTCGTTACCCAACCGCTCTCGGCCGA
AGACAAGACGAAGTGA
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Coding sequence (CDS) from alignment at NODE_213_length_36751_cov_4.280933:3248..4063-

>Gcaud7804.t1 ID=Gcaud7804.t1|Name=Gcaud7804.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=717bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:3248..4063- (Gracilaria caudata M_176_S67 male)
ATGATGACCCCGGGACTGTTGGCTTGGACGCAGTTTATGCTCACGTACCA
TGCCGCGTGCTTGTTCTTCCACATGCTTGATCGCAGGAAGCTGCTGCAGC
GCCACAAGGCGTTTCGTTCTAGCCCGGAGCTTCCGACATCAGAACCGAGC
GTAATCACCTCCTGGCTGGCGCTTTGTGCGCTCGCGCCGCTGCTACATGA
GGTGCCATTCTACCTGGGGCACCGCTTCATCCTGCATTCACCGCGCGGCG
TGGCGCGCTTTGGACACGCGCTCCACCACTCCGCCAAGGCGCACTGCGCA
ATCTCCGCCATGTACATGTACTCGTTCGACTTCTTGCTTGAAATCGTGCT
CCCGTACGTGGTACCACTCGTGGTACTTCGCCACGCGCGAATGCTAAGTG
AGGCGCATGCAAGTTGGTTGCTGGCGCTTGGCTCGTTGGGCGGACTTTAC
GAACACTCTGGCTACAACTTTGTGCCCAACGTGTGGTCATTTGACACACG
AATCCATGGCATGCATCATGTGTACTACTCGTGTTCGTTCGCCGACGGCG
TGGGCGCGCCCAGTCTGTTGGATCACGCTCTGCACACCGCGTGCGGCAGT
GTAGGTGCGCCGGCACTTGCCGCAAGAAAGCTCATCACTTGGCTGTCGCC
GTCGCATTCGCATTCCACCAGCGCCGTCGTTACCCAACCGCTCTCGGCCG
AAGACAAGACGAAGTGA
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