|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005709275.1 |
| PFAMs | ABC1 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K08869 |
| Evalue | 1.52e-92 |
| EggNOG OGs | COG0661@1|root,KOG1235@2759|Eukaryota |
| Description | regulation of tocopherol cyclase activity |
| COG category | E |
| BRITE | ko00000,ko01001 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7803.t1.stop1 | Gcaud7803.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_213_length_36751_cov_4.280933 726..728 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7803.t1.start1 | Gcaud7803.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_213_length_36751_cov_4.280933 2497..2499 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud7803.t1 ID=Gcaud7803.t1|Name=Gcaud7803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=429bp
MYALFCRVFAPAHARSLRFWRRVLPIYVAYKKTQLGLDLQNASTHKREKA
WNKRHHWAAEKVYNLCVELRGFYLKDGQFLGARSDIVPTAWCDSLRRLQD
RVPPVPFHQIENTIRQSYSVNKKHDMSFFDMDSVVTEFETQIPAEFDFLR
EAEMMTIIRNNLRRAGIFDVVIPKVVPGLVSRRALTMTYVDGVRPDNALA
LNHWGIKPKDVLKAVGRAFGQMVLCDGLAHCDPHLGNLIIMRDGKVALID
FGQAKEIPEELRKKLCAFYLAVNSKNNLYVLKTFSDLGIELDMRLEDMDE
KFLRMIPHYANGMLDTAPLPPQIEINPFSAQSPLKQVPIKRFNPDLFMIL
RTMGLLRSLTETLNVESVDCWMSNLFRPYALRGLRRRGLSEYEKRSRSRA
IRLSLTKGVCSPFDSQNDEHEREFCALS* back to topspliced messenger RNA >Gcaud7803.t1 ID=Gcaud7803.t1|Name=Gcaud7803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:726..2499- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTATGCGTTGTTCTGTAGAGTTTTTGCGCCGGCTCACGCTCGGAGTCT
GCGCTTTTGGAGAAGAGTACTTCCTATCTACGTGGCCTATAAAAAGACTC
AGCTTGGTCTAGACCTTCAGAATGCTTCTACTCACAAGAGAGAGAAAGCT
TGGAATAAACGTCATCACTGGGCTGCCGAAAAGGTCTACAATCTTTGCGT
GGAGCTTCGTGGCTTTTATCTCAAGGACGGCCAATTTCTTGGCGCTAGAA
GCGATATCGTGCCAACGGCATGGTGCGACTCTCTTCGTCGTCTGCAAGAT
CGCGTTCCTCCCGTGCCATTTCACCAAATTGAAAACACCATTCGTCAGTC
GTACAGCGTGAACAAAAAACATGACATGTCCTTTTTCGACATGGACTCGG
TGGTGACTGAGTTTGAGACACAGATTCCGGCAGAATTTGACTTTCTGAGG
GAGGCTGAGATGATGACGATTATTAGAAACAATCTTCGACGAGCTGGCAT
TTTTGATGTGGTGATTCCAAAGGTTGTGCCGGGACTTGTCTCACGTCGAG
CCTTGACGATGACGTACGTGGATGGCGTTCGACCGGATAACGCGCTTGCG
CTGAATCATTGGGGGATCAAGCCGAAGGATGTGCTCAAGGCGGTTGGTCG
AGCTTTTGGACAGATGGTGCTGTGTGATGGACTGGCACACTGTGACCCTC
ATCTTGGAAATCTAATCATCATGAGGGACGGGAAAGTGGCACTAATTGAT
TTTGGCCAAGCCAAGGAGATACCCGAAGAGCTTCGCAAAAAGCTGTGTGC
GTTCTACCTGGCAGTGAACTCCAAGAACAACTTGTACGTGTTAAAAACGT
TTTCAGATCTTGGAATTGAACTTGACATGCGTCTCGAAGACATGGACGAA
AAGTTCTTGCGCATGATTCCACACTACGCAAACGGAATGCTCGACACAGC
GCCATTACCGCCACAAATTGAAATCAACCCGTTTTCCGCGCAGAGCCCGT
TGAAACAAGTGCCCATCAAACGATTCAATCCGGATTTATTCATGATTCTC
CGCACGATGGGCTTGTTGAGGTCGTTGACGGAAACTTTGAATGTGGAAAG
TGTGGATTGTTGGATGTCCAACTTGTTTCGACCGTACGCGTTGCGCGGGT
TGCGACGAAGGGGCCTGTCGGAGTATGAGAAACGCAGTCGGTCGAGGGCG
ATTCGACTGAGCTTGACGAAGGGCGTGTGCTCGCCGTTTGACTCGCAGAA
CGATGAGCACGAGCGCGAATTTTGCGCGCTTTCATGA back to topprotein sequence of Gcaud7803.t1 >Gcaud7803.t1 ID=Gcaud7803.t1|Name=Gcaud7803.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=429bp
MYALFCRVFAPAHARSLRFWRRVLPIYVAYKKTQLGLDLQNASTHKREKA
WNKRHHWAAEKVYNLCVELRGFYLKDGQFLGARSDIVPTAWCDSLRRLQD
RVPPVPFHQIENTIRQSYSVNKKHDMSFFDMDSVVTEFETQIPAEFDFLR
EAEMMTIIRNNLRRAGIFDVVIPKVVPGLVSRRALTMTYVDGVRPDNALA
LNHWGIKPKDVLKAVGRAFGQMVLCDGLAHCDPHLGNLIIMRDGKVALID
FGQAKEIPEELRKKLCAFYLAVNSKNNLYVLKTFSDLGIELDMRLEDMDE
KFLRMIPHYANGMLDTAPLPPQIEINPFSAQSPLKQVPIKRFNPDLFMIL
RTMGLLRSLTETLNVESVDCWMSNLFRPYALRGLRRRGLSEYEKRSRSRA
IRLSLTKGVCSPFDSQNDEHEREFCALS* back to topmRNA from alignment at NODE_213_length_36751_cov_4.280933:726..2499- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud7803.t1 ID=Gcaud7803.t1|Name=Gcaud7803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1774bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:726..2499- (Gracilaria caudata M_176_S67 male)
ATGTATGCGTTGTTCTGTAGAGTTTTTGCGCCGGCTCACGCTCGGAGTCT
GCGCTTTTGGAGAAGAGTACTTCCTATCTACGTGGCCTATAAAAAGACTC
AGCTTGGTCTAGACCTTCAGAATGCTTCTACTCACAAGAGAGAGAAAGCT
TGGAATAAACGTCATCACTGGGCTGCCGAAAAGGTTTGTTCTCTTTTTCC
TGTCATTCACAGCCGTACATATCCGCTCACACTTCTTTTGTTTTCCTCTA
CAGGTCTACAATCTTTGCGTGGAGCTTCGTGGCTTTTATCTCAAGGACGG
TACGTTTCACAACCTATTTTTCTTGGTACCTATCTAAACAAGCGTGCTGA
CTGCCGACACAGGCCAATTTCTTGGCGCTAGAAGCGATATCGTGCCAACG
GCATGGTGCGACTCTCTTCGTCGTCTGCAAGATCGCGTTCCTCCCGTGCC
ATTTCACCAAATTGAAAACACCATTCGTCAGTCGTACAGCGTGAACAAAG
TGAGTCAAATCTTCAAGTACCTTGATCCAAATCCACTTGCGTCAGCCACC
ATCGCACAAGTACACCGAGGCGAAATGCCAGACGGCACCGCCATTGTTTT
GAAGACGCAATACACCGATCAACAACGTCTGTGCGACATGGACCTGCTCA
ATCTAAAACGCCTGGCATCATATCTTCAGAAACATGACATGTCCTTTTTC
GACATGGACTCGGTGGTGACTGAGTTTGAGACACAGATTCCGGCAGAATT
TGACTTTCTGAGGGAGGCTGAGATGATGACGATTATTAGAAACAATCTTC
GACGAGCTGGCATTTTTGATGTGGTGATTCCAAAGGTTGTGCCGGGACTT
GTCTCACGTCGAGCCTTGACGATGACGTACGTGGATGGCGTTCGACCGGA
TAACGCGCTTGCGCTGAATCATTGGGGGATCAAGCCGAAGGATGTGCTCA
AGGCGGTTGGTCGAGCTTTTGGACAGATGGTGCTGTGTGATGGACTGGCA
CACTGTGACCGTAAGTTTAGAAAGACAGCACTTTGCATGCGAAATGCTTT
GACTAACGTTCCTTTTCTGTTTTTGCTTTTGCTCACTTGGGCCTCCAGCT
CATCTTGGAAATCGTAAGTCATGCACATGCTTTTGTATTTTTTTTTGTAA
CCGCTTGTGTGTACGTTGCCACTAACACTGCCTCTTGTTTGTGCAACAGT
AATCATCATGAGGGACGGGAAAGTGGCACTAATTGATTTTGGCCAAGCCA
AGGAGATACCCGAAGAGCTTCGCAAAAAGCTGTGTGCGTTCTACCTGGCA
GTGAACTCCAAGAACAACTTGTACGTGTTAAAAACGTTTTCAGATCTTGG
AATTGAACTTGACATGCGTCTCGAAGACATGGACGAAAAGTTCTTGCGCA
TGATTCCACACTACGCAAACGGAATGCTCGACACAGCGCCATTACCGCCA
CAAATTGAAATCAACCCGTTTTCCGCGCAGAGCCCGTTGAAACAAGTGCC
CATCAAACGATTCAATCCGGATTTATTCATGATTCTCCGCACGATGGGCT
TGTTGAGGTCGTTGACGGAAACTTTGAATGTGGAAAGTGTGGATTGTTGG
ATGTCCAACTTGTTTCGACCGTACGCGTTGCGCGGGTTGCGACGAAGGGG
CCTGTCGGAGTATGAGAAACGCAGTCGGTCGAGGGCGATTCGACTGAGCT
TGACGAAGGGCGTGTGCTCGCCGTTTGACTCGCAGAACGATGAGCACGAG
CGCGAATTTTGCGCGCTTTCATGA back to topCoding sequence (CDS) from alignment at NODE_213_length_36751_cov_4.280933:726..2499- >Gcaud7803.t1 ID=Gcaud7803.t1|Name=Gcaud7803.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1287bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:726..2499- (Gracilaria caudata M_176_S67 male)
ATGTATGCGTTGTTCTGTAGAGTTTTTGCGCCGGCTCACGCTCGGAGTCT
GCGCTTTTGGAGAAGAGTACTTCCTATCTACGTGGCCTATAAAAAGACTC
AGCTTGGTCTAGACCTTCAGAATGCTTCTACTCACAAGAGAGAGAAAGCT
TGGAATAAACGTCATCACTGGGCTGCCGAAAAGGTCTACAATCTTTGCGT
GGAGCTTCGTGGCTTTTATCTCAAGGACGGCCAATTTCTTGGCGCTAGAA
GCGATATCGTGCCAACGGCATGGTGCGACTCTCTTCGTCGTCTGCAAGAT
CGCGTTCCTCCCGTGCCATTTCACCAAATTGAAAACACCATTCGTCAGTC
GTACAGCGTGAACAAAAAACATGACATGTCCTTTTTCGACATGGACTCGG
TGGTGACTGAGTTTGAGACACAGATTCCGGCAGAATTTGACTTTCTGAGG
GAGGCTGAGATGATGACGATTATTAGAAACAATCTTCGACGAGCTGGCAT
TTTTGATGTGGTGATTCCAAAGGTTGTGCCGGGACTTGTCTCACGTCGAG
CCTTGACGATGACGTACGTGGATGGCGTTCGACCGGATAACGCGCTTGCG
CTGAATCATTGGGGGATCAAGCCGAAGGATGTGCTCAAGGCGGTTGGTCG
AGCTTTTGGACAGATGGTGCTGTGTGATGGACTGGCACACTGTGACCCTC
ATCTTGGAAATCTAATCATCATGAGGGACGGGAAAGTGGCACTAATTGAT
TTTGGCCAAGCCAAGGAGATACCCGAAGAGCTTCGCAAAAAGCTGTGTGC
GTTCTACCTGGCAGTGAACTCCAAGAACAACTTGTACGTGTTAAAAACGT
TTTCAGATCTTGGAATTGAACTTGACATGCGTCTCGAAGACATGGACGAA
AAGTTCTTGCGCATGATTCCACACTACGCAAACGGAATGCTCGACACAGC
GCCATTACCGCCACAAATTGAAATCAACCCGTTTTCCGCGCAGAGCCCGT
TGAAACAAGTGCCCATCAAACGATTCAATCCGGATTTATTCATGATTCTC
CGCACGATGGGCTTGTTGAGGTCGTTGACGGAAACTTTGAATGTGGAAAG
TGTGGATTGTTGGATGTCCAACTTGTTTCGACCGTACGCGTTGCGCGGGT
TGCGACGAAGGGGCCTGTCGGAGTATGAGAAACGCAGTCGGTCGAGGGCG
ATTCGACTGAGCTTGACGAAGGGCGTGTGCTCGCCGTTTGACTCGCAGAA
CGATGAGCACGAGCGCGAATTTTGCGCGCTTTCATGA back to top
|