Gcaud7802.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7802.t1
Unique NameGcaud7802.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2045_length_7085_cov_3.760652contigNODE_2045_length_7085_cov_3.760652:1488..1823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7802Gcaud7802Gracilaria caudata M_176_S67 malegeneNODE_2045_length_7085_cov_3.760652 1488..1823 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7802.t1.stop1Gcaud7802.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2045_length_7085_cov_3.760652 1488..1490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7802.t1.CDS1Gcaud7802.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2045_length_7085_cov_3.760652 1488..1823 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7802.t1.exon1Gcaud7802.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2045_length_7085_cov_3.760652 1488..1823 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7802.t1.start1Gcaud7802.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2045_length_7085_cov_3.760652 1821..1823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7802.t1Gcaud7802.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2045_length_7085_cov_3.760652 1488..1823 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7802.t1 ID=Gcaud7802.t1|Name=Gcaud7802.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=112bp
MIAGEGPETTVNSPAHVPAPVENCVRIHDRTNAGMTFSTYEECPHDRVAQ
VLGRAPYYLSMRGRITKGKDIKCGLAAFGRHAVMGDFGTLNISFDAMNVV
ALYFVEIWATT*
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spliced messenger RNA

>Gcaud7802.t1 ID=Gcaud7802.t1|Name=Gcaud7802.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp|location=Sequence derived from alignment at NODE_2045_length_7085_cov_3.760652:1488..1823- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCGGGTGAAGGACCGGAAACCACGGTGAACAGCCCCGCACATGT
GCCAGCGCCAGTGGAGAATTGCGTGCGCATTCACGACCGAACTAACGCCG
GAATGACATTCAGTACCTATGAGGAATGTCCACACGACAGAGTTGCGCAG
GTGTTAGGACGAGCTCCGTACTACTTGTCTATGAGAGGGCGTATTACCAA
GGGTAAAGATATCAAGTGTGGCTTAGCTGCTTTCGGAAGACACGCGGTGA
TGGGTGATTTTGGAACACTGAACATTTCGTTTGATGCTATGAATGTGGTT
GCGCTGTACTTTGTTGAGATTTGGGCAACTACCTAA
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protein sequence of Gcaud7802.t1

>Gcaud7802.t1 ID=Gcaud7802.t1|Name=Gcaud7802.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=112bp
MIAGEGPETTVNSPAHVPAPVENCVRIHDRTNAGMTFSTYEECPHDRVAQ
VLGRAPYYLSMRGRITKGKDIKCGLAAFGRHAVMGDFGTLNISFDAMNVV
ALYFVEIWATT*
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mRNA from alignment at NODE_2045_length_7085_cov_3.760652:1488..1823-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7802.t1 ID=Gcaud7802.t1|Name=Gcaud7802.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp|location=Sequence derived from alignment at NODE_2045_length_7085_cov_3.760652:1488..1823- (Gracilaria caudata M_176_S67 male)
ATGATCGCGGGTGAAGGACCGGAAACCACGGTGAACAGCCCCGCACATGT
GCCAGCGCCAGTGGAGAATTGCGTGCGCATTCACGACCGAACTAACGCCG
GAATGACATTCAGTACCTATGAGGAATGTCCACACGACAGAGTTGCGCAG
GTGTTAGGACGAGCTCCGTACTACTTGTCTATGAGAGGGCGTATTACCAA
GGGTAAAGATATCAAGTGTGGCTTAGCTGCTTTCGGAAGACACGCGGTGA
TGGGTGATTTTGGAACACTGAACATTTCGTTTGATGCTATGAATGTGGTT
GCGCTGTACTTTGTTGAGATTTGGGCAACTACCTAA
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Coding sequence (CDS) from alignment at NODE_2045_length_7085_cov_3.760652:1488..1823-

>Gcaud7802.t1 ID=Gcaud7802.t1|Name=Gcaud7802.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=336bp|location=Sequence derived from alignment at NODE_2045_length_7085_cov_3.760652:1488..1823- (Gracilaria caudata M_176_S67 male)
ATGATCGCGGGTGAAGGACCGGAAACCACGGTGAACAGCCCCGCACATGT
GCCAGCGCCAGTGGAGAATTGCGTGCGCATTCACGACCGAACTAACGCCG
GAATGACATTCAGTACCTATGAGGAATGTCCACACGACAGAGTTGCGCAG
GTGTTAGGACGAGCTCCGTACTACTTGTCTATGAGAGGGCGTATTACCAA
GGGTAAAGATATCAAGTGTGGCTTAGCTGCTTTCGGAAGACACGCGGTGA
TGGGTGATTTTGGAACACTGAACATTTCGTTTGATGCTATGAATGTGGTT
GCGCTGTACTTTGTTGAGATTTGGGCAACTACCTAA
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