Gcaud7798.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7798.t1
Unique NameGcaud7798.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3072_length_4096_cov_4.832959contigNODE_3072_length_4096_cov_4.832959:990..1435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7798Gcaud7798Gracilaria caudata M_176_S67 malegeneNODE_3072_length_4096_cov_4.832959 990..1435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7798.t1Gcaud7798.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3072_length_4096_cov_4.832959 990..1435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7798.t1.CDS1Gcaud7798.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3072_length_4096_cov_4.832959 990..1012 +
Gcaud7798.t1.CDS2Gcaud7798.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_3072_length_4096_cov_4.832959 1103..1435 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7798.t1.exon1Gcaud7798.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3072_length_4096_cov_4.832959 990..1012 +
Gcaud7798.t1.exon2Gcaud7798.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_3072_length_4096_cov_4.832959 1103..1435 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7798.t1.intron1Gcaud7798.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_3072_length_4096_cov_4.832959 1013..1102 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7798.t1.stop1Gcaud7798.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3072_length_4096_cov_4.832959 1433..1435 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7798.t1 ID=Gcaud7798.t1|Name=Gcaud7798.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=119bp
XLGEYFEANDDDSYIFFDWGSARIDSPLTDITGLREQIRCDGEELEVSME
PYFKLWKEHASLSELHSYCRPHGMIETLIACLVEFEYTSKPFEDFWEGIY
YLRNVLLNVMDEVRHKNE*
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spliced messenger RNA

>Gcaud7798.t1 ID=Gcaud7798.t1|Name=Gcaud7798.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp|location=Sequence derived from alignment at NODE_3072_length_4096_cov_4.832959:990..1435+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
agcttggagagtactttgaagcgAATGATGACGATTCGTACATTTTCTTC
GATTGGGGATCTGCGAGGATCGATTCTCCTCTGACAGACATAACGGGCCT
AAGAGAGCAAATCCGCTGCGATGGTGAGGAGCTCGAAGTCAGCATGGAAC
CGTACTTTAAGTTGTGGAAAGAGCATGCCTCTCTATCTGAGCTTCATTCA
TACTGCAGGCCACATGGTATGATAGAAACTCTCATTGCATGCTTGGTGGA
GTTTGAGTACACCTCGAAACCTTTCGAAGACTTCTGGGAAGGGATCTATT
ATCTCCGAAATGTATTACTCAATGTCATGGATGAGGTAAGGCATAAGAAC
GAATAA
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protein sequence of Gcaud7798.t1

>Gcaud7798.t1 ID=Gcaud7798.t1|Name=Gcaud7798.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=119bp
XLGEYFEANDDDSYIFFDWGSARIDSPLTDITGLREQIRCDGEELEVSME
PYFKLWKEHASLSELHSYCRPHGMIETLIACLVEFEYTSKPFEDFWEGIY
YLRNVLLNVMDEVRHKNE*
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mRNA from alignment at NODE_3072_length_4096_cov_4.832959:990..1435+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7798.t1 ID=Gcaud7798.t1|Name=Gcaud7798.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=446bp|location=Sequence derived from alignment at NODE_3072_length_4096_cov_4.832959:990..1435+ (Gracilaria caudata M_176_S67 male)
agcttggagagtactttgaagcggtatgtatatttcttcgagacctgtat
gataacccccgtttccctctttcactggtgcatggcgacctaaatcgAGG
CAACATCATTAAGAATGATGACGATTCGTACATTTTCTTCGATTGGGGAT
CTGCGAGGATCGATTCTCCTCTGACAGACATAACGGGCCTAAGAGAGCAA
ATCCGCTGCGATGGTGAGGAGCTCGAAGTCAGCATGGAACCGTACTTTAA
GTTGTGGAAAGAGCATGCCTCTCTATCTGAGCTTCATTCATACTGCAGGC
CACATGGTATGATAGAAACTCTCATTGCATGCTTGGTGGAGTTTGAGTAC
ACCTCGAAACCTTTCGAAGACTTCTGGGAAGGGATCTATTATCTCCGAAA
TGTATTACTCAATGTCATGGATGAGGTAAGGCATAAGAACGAATAA
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Coding sequence (CDS) from alignment at NODE_3072_length_4096_cov_4.832959:990..1435+

>Gcaud7798.t1 ID=Gcaud7798.t1|Name=Gcaud7798.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=356bp|location=Sequence derived from alignment at NODE_3072_length_4096_cov_4.832959:990..1435+ (Gracilaria caudata M_176_S67 male)
agcttggagagtactttgaagcgAATGATGACGATTCGTACATTTTCTTC
GATTGGGGATCTGCGAGGATCGATTCTCCTCTGACAGACATAACGGGCCT
AAGAGAGCAAATCCGCTGCGATGGTGAGGAGCTCGAAGTCAGCATGGAAC
CGTACTTTAAGTTGTGGAAAGAGCATGCCTCTCTATCTGAGCTTCATTCA
TACTGCAGGCCACATGGTATGATAGAAACTCTCATTGCATGCTTGGTGGA
GTTTGAGTACACCTCGAAACCTTTCGAAGACTTCTGGGAAGGGATCTATT
ATCTCCGAAATGTATTACTCAATGTCATGGATGAGGTAAGGCATAAGAAC
GAATAA
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