Gcaud7790.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7790.t1
Unique NameGcaud7790.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1215_length_12539_cov_3.918139contigNODE_1215_length_12539_cov_3.918139:9263..9886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7790Gcaud7790Gracilaria caudata M_176_S67 malegeneNODE_1215_length_12539_cov_3.918139 9263..9886 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7790.t1.start1Gcaud7790.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1215_length_12539_cov_3.918139 9263..9265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7790.t1.CDS1Gcaud7790.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1215_length_12539_cov_3.918139 9263..9886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7790.t1.exon1Gcaud7790.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1215_length_12539_cov_3.918139 9263..9886 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7790.t1.stop1Gcaud7790.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1215_length_12539_cov_3.918139 9884..9886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7790.t1Gcaud7790.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1215_length_12539_cov_3.918139 9263..9886 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7790.t1 ID=Gcaud7790.t1|Name=Gcaud7790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=208bp
LRLDPDDYEAFKEAVGGAEWRPEWTSAGGDAVWLLALSTPSSHEGDAFLD
HVEDVLDRSTAARDLMISMEKSWSLDDIEGIAHVKQHIKGIVLMNRHRIV
GTIGAFTHANGVAMMRCVLQPGEVGVERGQHWTAVHLAHVQLRALCWEQR
YIVCSEQCVGVADLVELMQHKIVPWLKKFTESLMPDQDRVTVQPATPLSG
LLSPFDS*
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spliced messenger RNA

>Gcaud7790.t1 ID=Gcaud7790.t1|Name=Gcaud7790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_1215_length_12539_cov_3.918139:9263..9886+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ctgcgcctcgaCCCCGACGACTACGAGGCGTTCAAAGAGGCGGTGGGCGG
TGCTGAGTGGCGTCCGGAGTGGACGTCGGCCGGTGGCGATGCAGTTTGGT
TGCTTGCACTGTCCACGCCAAGTTCTCACGAGGGAGACGCGTTTCTGGAT
CATGTGGAAGATGTGCTCGATCGTTCCACTGCCGCTCGTGATCTGATGAT
CAGCATGGAGAAGAGTTGGAGTCTGGACGACATTGAAGGCATTGCGCATG
TGAAACAACACATCAAGGGCATTGTTCTGATGAATCGCCACCGCATCGTG
GGCACAATTGGCGCGTTTACGCACGCAAACGGCGTGGCAATGATGCGTTG
TGTGCTGCAACCCGGAGAAGTGGGCGTTGAGCGAGGCCAGCATTGGACCG
CTGTGCACTTGGCTCATGTGCAGCTGCGCGCGCTTTGTTGGGAACAACGG
TACATTGTGTGCAGCGAGCAGTGTGTGGGTGTGGCCGATCTCGTTGAGCT
GATGCAGCACAAAATCGTTCCGTGGCTCAAAAAGTTTACGGAGTCGCTCA
TGCCGGACCAGGATCGCGTCACGGTGCAGCCGGCCACTCCGTTGTCTGGC
TTACTTTCGCCATTCGATTCGTGA
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protein sequence of Gcaud7790.t1

>Gcaud7790.t1 ID=Gcaud7790.t1|Name=Gcaud7790.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
LRLDPDDYEAFKEAVGGAEWRPEWTSAGGDAVWLLALSTPSSHEGDAFLD
HVEDVLDRSTAARDLMISMEKSWSLDDIEGIAHVKQHIKGIVLMNRHRIV
GTIGAFTHANGVAMMRCVLQPGEVGVERGQHWTAVHLAHVQLRALCWEQR
YIVCSEQCVGVADLVELMQHKIVPWLKKFTESLMPDQDRVTVQPATPLSG
LLSPFDS*
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mRNA from alignment at NODE_1215_length_12539_cov_3.918139:9263..9886+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7790.t1 ID=Gcaud7790.t1|Name=Gcaud7790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_1215_length_12539_cov_3.918139:9263..9886+ (Gracilaria caudata M_176_S67 male)
ctgcgcctcgaCCCCGACGACTACGAGGCGTTCAAAGAGGCGGTGGGCGG
TGCTGAGTGGCGTCCGGAGTGGACGTCGGCCGGTGGCGATGCAGTTTGGT
TGCTTGCACTGTCCACGCCAAGTTCTCACGAGGGAGACGCGTTTCTGGAT
CATGTGGAAGATGTGCTCGATCGTTCCACTGCCGCTCGTGATCTGATGAT
CAGCATGGAGAAGAGTTGGAGTCTGGACGACATTGAAGGCATTGCGCATG
TGAAACAACACATCAAGGGCATTGTTCTGATGAATCGCCACCGCATCGTG
GGCACAATTGGCGCGTTTACGCACGCAAACGGCGTGGCAATGATGCGTTG
TGTGCTGCAACCCGGAGAAGTGGGCGTTGAGCGAGGCCAGCATTGGACCG
CTGTGCACTTGGCTCATGTGCAGCTGCGCGCGCTTTGTTGGGAACAACGG
TACATTGTGTGCAGCGAGCAGTGTGTGGGTGTGGCCGATCTCGTTGAGCT
GATGCAGCACAAAATCGTTCCGTGGCTCAAAAAGTTTACGGAGTCGCTCA
TGCCGGACCAGGATCGCGTCACGGTGCAGCCGGCCACTCCGTTGTCTGGC
TTACTTTCGCCATTCGATTCGTGA
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Coding sequence (CDS) from alignment at NODE_1215_length_12539_cov_3.918139:9263..9886+

>Gcaud7790.t1 ID=Gcaud7790.t1|Name=Gcaud7790.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=624bp|location=Sequence derived from alignment at NODE_1215_length_12539_cov_3.918139:9263..9886+ (Gracilaria caudata M_176_S67 male)
ctgcgcctcgaCCCCGACGACTACGAGGCGTTCAAAGAGGCGGTGGGCGG
TGCTGAGTGGCGTCCGGAGTGGACGTCGGCCGGTGGCGATGCAGTTTGGT
TGCTTGCACTGTCCACGCCAAGTTCTCACGAGGGAGACGCGTTTCTGGAT
CATGTGGAAGATGTGCTCGATCGTTCCACTGCCGCTCGTGATCTGATGAT
CAGCATGGAGAAGAGTTGGAGTCTGGACGACATTGAAGGCATTGCGCATG
TGAAACAACACATCAAGGGCATTGTTCTGATGAATCGCCACCGCATCGTG
GGCACAATTGGCGCGTTTACGCACGCAAACGGCGTGGCAATGATGCGTTG
TGTGCTGCAACCCGGAGAAGTGGGCGTTGAGCGAGGCCAGCATTGGACCG
CTGTGCACTTGGCTCATGTGCAGCTGCGCGCGCTTTGTTGGGAACAACGG
TACATTGTGTGCAGCGAGCAGTGTGTGGGTGTGGCCGATCTCGTTGAGCT
GATGCAGCACAAAATCGTTCCGTGGCTCAAAAAGTTTACGGAGTCGCTCA
TGCCGGACCAGGATCGCGTCACGGTGCAGCCGGCCACTCCGTTGTCTGGC
TTACTTTCGCCATTCGATTCGTGA
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