Gcaud7777.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7777.t1
Unique Name	Gcaud7777.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1202_length_12719_cov_3.417723	contig	NODE_1202_length_12719_cov_3.417723:9323..10945 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5888.CAK69321
PFAMs	Cyt-b5,FA_desaturase,GWT1
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016020,GO:0016053,GO:0016491,GO:0019752,GO:0032501,GO:0032502,GO:0032787,GO:0033559,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0048856,GO:0050896,GO:0055114,GO:0071704,GO:0071944,GO:0072330,GO:1901576
Evalue	2.48e-156
EggNOG OGs	COG3239@1\|root,KOG4232@2759\|Eukaryota
Description	unsaturated fatty acid biosynthetic process
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7777	Gcaud7777	Gracilaria caudata M_176_S67 male	gene	NODE_1202_length_12719_cov_3.417723 9323..10945 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7777.t1.start1	Gcaud7777.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1202_length_12719_cov_3.417723 9323..9325 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7777.t1.CDS1	Gcaud7777.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1202_length_12719_cov_3.417723 9323..10945 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7777.t1.exon1	Gcaud7777.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1202_length_12719_cov_3.417723 9323..10945 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7777.t1.stop1	Gcaud7777.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1202_length_12719_cov_3.417723 10943..10945 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7777.t1	Gcaud7777.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1202_length_12719_cov_3.417723 9323..10945 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1202_length_12719_cov_3.417723:9323..10945+
coding sequence from alignment at NODE_1202_length_12719_cov_3.417723:9323..10945+

mRNA sequence

>Gcaud7777.t1 ID=Gcaud7777.t1|Name=Gcaud7777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=541bp
MQPVARRYMSAAGCIIAASAIISALLITRTSLRTYLFLPILALLLELVAR
LYDLRILRATRAQQQSARSATNDDGEDKRAEQHGVYSWQQLAQHNHEHSA
WIAIHGRVYDVTNFVARHPGGSELLLLAVGRDATDLFESYHPFTDAPRKL
LQKYHIGSLATFEHPVYKRDSGFYRDACAAVRAYFEQSGLDSKEPLTAFV
RMAPVYAVFAGSFYAVYVARNVPLALRATLAVVMGIAQGMPLTGWMHDAS
HSALGRCERWWWTIGRLALDYVSGSSMLSWRNQHVLGHHVYTNVMGADPD
LPTSLHGDPRRLLQQQRWAPVYRWQHLYLPPLYGVLGIKSRLQDFTEIYS
RLTNGPVRVNPIIVQDYLRMLSSKCVWAFYRVVWPLCVVRAVSGAQMGAL
LLLTEMTTGYWLAFNFQVSHVSTDAHFLFSDVSKRAQGKCPALYEHEWAH
SQIRTTVDYAHGSALAAYFSGALNYQTVHHLFPTVSQYHYAAITPIVMRV
AEKHGLRFNVLRGFGCALRAHVAHLQHMGQLGQAAELKLE*

spliced messenger RNA

>Gcaud7777.t1 ID=Gcaud7777.t1|Name=Gcaud7777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_1202_length_12719_cov_3.417723:9323..10945+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCGTCGCGCGCCGCTACATGAGCGCCGCCGGCTGCATCATCGC
CGCGTCGGCCATCATCTCCGCGTTGCTCATCACGCGCACCTCGCTGCGCA
CCTACCTCTTCCTGCCCATCCTCGCGCTGCTTCTCGAGCTCGTCGCGCGT
CTGTACGATCTGCGCATACTGCGCGCCACGCGCGCGCAGCAGCAGAGCGC
GCGCTCTGCCACAAACGACGACGGCGAAGACAAGCGCGCAGAACAACACG
GCGTGTACAGCTGGCAACAACTTGCGCAGCACAACCACGAACACTCCGCG
TGGATCGCCATTCACGGACGTGTGTACGACGTGACCAACTTTGTGGCGCG
TCATCCGGGTGGTAGTGAACTTTTACTGCTTGCGGTGGGCAGAGATGCCA
CCGATTTGTTCGAATCGTATCACCCGTTCACCGACGCGCCGCGCAAGCTG
CTGCAAAAGTACCACATCGGCTCGCTGGCCACGTTTGAGCACCCCGTGTA
CAAGCGCGACTCCGGCTTTTACCGCGACGCGTGCGCGGCGGTGCGCGCGT
ACTTTGAGCAAAGCGGCCTGGACAGCAAGGAACCGCTGACGGCGTTTGTG
CGCATGGCGCCGGTGTACGCGGTGTTTGCGGGCAGCTTCTACGCGGTGTA
TGTGGCGCGCAACGTGCCACTGGCGCTGCGCGCGACGCTGGCGGTGGTGA
TGGGCATTGCGCAGGGCATGCCGCTCACGGGCTGGATGCACGACGCGTCG
CACAGCGCGCTGGGGCGGTGCGAGCGCTGGTGGTGGACGATCGGGCGGCT
GGCGCTGGACTACGTGAGCGGCTCGTCCATGCTGTCGTGGCGCAATCAGC
ACGTGCTCGGGCACCACGTGTACACCAACGTGATGGGCGCCGACCCGGAC
CTGCCCACCTCGCTGCACGGCGACCCGCGCCGTCTGCTGCAGCAGCAGCG
CTGGGCGCCCGTCTACCGCTGGCAACACTTGTACCTGCCGCCGCTGTACG
GCGTGCTGGGTATCAAGTCGCGACTGCAGGACTTCACCGAGATCTACTCG
CGGCTGACCAACGGGCCGGTGCGCGTGAACCCCATCATTGTGCAGGACTA
CTTGCGCATGTTGTCGTCCAAGTGCGTGTGGGCGTTCTACCGCGTGGTGT
GGCCGCTGTGCGTGGTGCGCGCGGTGAGCGGCGCGCAGATGGGCGCCTTG
TTGCTGCTCACGGAGATGACCACCGGCTATTGGCTGGCGTTCAATTTTCA
GGTGAGTCACGTGTCCACCGACGCGCACTTTTTGTTCTCGGACGTGAGCA
AGAGGGCGCAGGGTAAGTGTCCCGCGCTGTATGAGCACGAATGGGCGCAC
TCGCAGATCCGTACCACGGTGGACTATGCGCACGGCAGCGCGCTGGCGGC
GTACTTCTCGGGCGCGCTCAATTATCAGACGGTGCACCACCTGTTTCCCA
CGGTGAGTCAGTACCACTACGCGGCCATCACGCCGATTGTGATGCGCGTG
GCGGAGAAACACGGGCTGCGCTTCAACGTGCTGCGCGGGTTTGGATGCGC
GCTGCGCGCGCATGTGGCGCACCTGCAGCACATGGGACAGCTGGGTCAGG
CCGCAGAGCTCAAGCTGGAGTGA

protein sequence of Gcaud7777.t1

>Gcaud7777.t1 ID=Gcaud7777.t1|Name=Gcaud7777.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=541bp
MQPVARRYMSAAGCIIAASAIISALLITRTSLRTYLFLPILALLLELVAR
LYDLRILRATRAQQQSARSATNDDGEDKRAEQHGVYSWQQLAQHNHEHSA
WIAIHGRVYDVTNFVARHPGGSELLLLAVGRDATDLFESYHPFTDAPRKL
LQKYHIGSLATFEHPVYKRDSGFYRDACAAVRAYFEQSGLDSKEPLTAFV
RMAPVYAVFAGSFYAVYVARNVPLALRATLAVVMGIAQGMPLTGWMHDAS
HSALGRCERWWWTIGRLALDYVSGSSMLSWRNQHVLGHHVYTNVMGADPD
LPTSLHGDPRRLLQQQRWAPVYRWQHLYLPPLYGVLGIKSRLQDFTEIYS
RLTNGPVRVNPIIVQDYLRMLSSKCVWAFYRVVWPLCVVRAVSGAQMGAL
LLLTEMTTGYWLAFNFQVSHVSTDAHFLFSDVSKRAQGKCPALYEHEWAH
SQIRTTVDYAHGSALAAYFSGALNYQTVHHLFPTVSQYHYAAITPIVMRV
AEKHGLRFNVLRGFGCALRAHVAHLQHMGQLGQAAELKLE*

mRNA from alignment at NODE_1202_length_12719_cov_3.417723:9323..10945+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7777.t1 ID=Gcaud7777.t1|Name=Gcaud7777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_1202_length_12719_cov_3.417723:9323..10945+ (Gracilaria caudata M_176_S67 male)
ATGCAGCCCGTCGCGCGCCGCTACATGAGCGCCGCCGGCTGCATCATCGC
CGCGTCGGCCATCATCTCCGCGTTGCTCATCACGCGCACCTCGCTGCGCA
CCTACCTCTTCCTGCCCATCCTCGCGCTGCTTCTCGAGCTCGTCGCGCGT
CTGTACGATCTGCGCATACTGCGCGCCACGCGCGCGCAGCAGCAGAGCGC
GCGCTCTGCCACAAACGACGACGGCGAAGACAAGCGCGCAGAACAACACG
GCGTGTACAGCTGGCAACAACTTGCGCAGCACAACCACGAACACTCCGCG
TGGATCGCCATTCACGGACGTGTGTACGACGTGACCAACTTTGTGGCGCG
TCATCCGGGTGGTAGTGAACTTTTACTGCTTGCGGTGGGCAGAGATGCCA
CCGATTTGTTCGAATCGTATCACCCGTTCACCGACGCGCCGCGCAAGCTG
CTGCAAAAGTACCACATCGGCTCGCTGGCCACGTTTGAGCACCCCGTGTA
CAAGCGCGACTCCGGCTTTTACCGCGACGCGTGCGCGGCGGTGCGCGCGT
ACTTTGAGCAAAGCGGCCTGGACAGCAAGGAACCGCTGACGGCGTTTGTG
CGCATGGCGCCGGTGTACGCGGTGTTTGCGGGCAGCTTCTACGCGGTGTA
TGTGGCGCGCAACGTGCCACTGGCGCTGCGCGCGACGCTGGCGGTGGTGA
TGGGCATTGCGCAGGGCATGCCGCTCACGGGCTGGATGCACGACGCGTCG
CACAGCGCGCTGGGGCGGTGCGAGCGCTGGTGGTGGACGATCGGGCGGCT
GGCGCTGGACTACGTGAGCGGCTCGTCCATGCTGTCGTGGCGCAATCAGC
ACGTGCTCGGGCACCACGTGTACACCAACGTGATGGGCGCCGACCCGGAC
CTGCCCACCTCGCTGCACGGCGACCCGCGCCGTCTGCTGCAGCAGCAGCG
CTGGGCGCCCGTCTACCGCTGGCAACACTTGTACCTGCCGCCGCTGTACG
GCGTGCTGGGTATCAAGTCGCGACTGCAGGACTTCACCGAGATCTACTCG
CGGCTGACCAACGGGCCGGTGCGCGTGAACCCCATCATTGTGCAGGACTA
CTTGCGCATGTTGTCGTCCAAGTGCGTGTGGGCGTTCTACCGCGTGGTGT
GGCCGCTGTGCGTGGTGCGCGCGGTGAGCGGCGCGCAGATGGGCGCCTTG
TTGCTGCTCACGGAGATGACCACCGGCTATTGGCTGGCGTTCAATTTTCA
GGTGAGTCACGTGTCCACCGACGCGCACTTTTTGTTCTCGGACGTGAGCA
AGAGGGCGCAGGGTAAGTGTCCCGCGCTGTATGAGCACGAATGGGCGCAC
TCGCAGATCCGTACCACGGTGGACTATGCGCACGGCAGCGCGCTGGCGGC
GTACTTCTCGGGCGCGCTCAATTATCAGACGGTGCACCACCTGTTTCCCA
CGGTGAGTCAGTACCACTACGCGGCCATCACGCCGATTGTGATGCGCGTG
GCGGAGAAACACGGGCTGCGCTTCAACGTGCTGCGCGGGTTTGGATGCGC
GCTGCGCGCGCATGTGGCGCACCTGCAGCACATGGGACAGCTGGGTCAGG
CCGCAGAGCTCAAGCTGGAGTGA

Coding sequence (CDS) from alignment at NODE_1202_length_12719_cov_3.417723:9323..10945+

>Gcaud7777.t1 ID=Gcaud7777.t1|Name=Gcaud7777.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1623bp|location=Sequence derived from alignment at NODE_1202_length_12719_cov_3.417723:9323..10945+ (Gracilaria caudata M_176_S67 male)
ATGCAGCCCGTCGCGCGCCGCTACATGAGCGCCGCCGGCTGCATCATCGC
CGCGTCGGCCATCATCTCCGCGTTGCTCATCACGCGCACCTCGCTGCGCA
CCTACCTCTTCCTGCCCATCCTCGCGCTGCTTCTCGAGCTCGTCGCGCGT
CTGTACGATCTGCGCATACTGCGCGCCACGCGCGCGCAGCAGCAGAGCGC
GCGCTCTGCCACAAACGACGACGGCGAAGACAAGCGCGCAGAACAACACG
GCGTGTACAGCTGGCAACAACTTGCGCAGCACAACCACGAACACTCCGCG
TGGATCGCCATTCACGGACGTGTGTACGACGTGACCAACTTTGTGGCGCG
TCATCCGGGTGGTAGTGAACTTTTACTGCTTGCGGTGGGCAGAGATGCCA
CCGATTTGTTCGAATCGTATCACCCGTTCACCGACGCGCCGCGCAAGCTG
CTGCAAAAGTACCACATCGGCTCGCTGGCCACGTTTGAGCACCCCGTGTA
CAAGCGCGACTCCGGCTTTTACCGCGACGCGTGCGCGGCGGTGCGCGCGT
ACTTTGAGCAAAGCGGCCTGGACAGCAAGGAACCGCTGACGGCGTTTGTG
CGCATGGCGCCGGTGTACGCGGTGTTTGCGGGCAGCTTCTACGCGGTGTA
TGTGGCGCGCAACGTGCCACTGGCGCTGCGCGCGACGCTGGCGGTGGTGA
TGGGCATTGCGCAGGGCATGCCGCTCACGGGCTGGATGCACGACGCGTCG
CACAGCGCGCTGGGGCGGTGCGAGCGCTGGTGGTGGACGATCGGGCGGCT
GGCGCTGGACTACGTGAGCGGCTCGTCCATGCTGTCGTGGCGCAATCAGC
ACGTGCTCGGGCACCACGTGTACACCAACGTGATGGGCGCCGACCCGGAC
CTGCCCACCTCGCTGCACGGCGACCCGCGCCGTCTGCTGCAGCAGCAGCG
CTGGGCGCCCGTCTACCGCTGGCAACACTTGTACCTGCCGCCGCTGTACG
GCGTGCTGGGTATCAAGTCGCGACTGCAGGACTTCACCGAGATCTACTCG
CGGCTGACCAACGGGCCGGTGCGCGTGAACCCCATCATTGTGCAGGACTA
CTTGCGCATGTTGTCGTCCAAGTGCGTGTGGGCGTTCTACCGCGTGGTGT
GGCCGCTGTGCGTGGTGCGCGCGGTGAGCGGCGCGCAGATGGGCGCCTTG
TTGCTGCTCACGGAGATGACCACCGGCTATTGGCTGGCGTTCAATTTTCA
GGTGAGTCACGTGTCCACCGACGCGCACTTTTTGTTCTCGGACGTGAGCA
AGAGGGCGCAGGGTAAGTGTCCCGCGCTGTATGAGCACGAATGGGCGCAC
TCGCAGATCCGTACCACGGTGGACTATGCGCACGGCAGCGCGCTGGCGGC
GTACTTCTCGGGCGCGCTCAATTATCAGACGGTGCACCACCTGTTTCCCA
CGGTGAGTCAGTACCACTACGCGGCCATCACGCCGATTGTGATGCGCGTG
GCGGAGAAACACGGGCTGCGCTTCAACGTGCTGCGCGGGTTTGGATGCGC
GCTGCGCGCGCATGTGGCGCACCTGCAGCACATGGGACAGCTGGGTCAGG
CCGCAGAGCTCAAGCTGGAGTGA