Gcaud7761.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7761.t2
Unique Name	Gcaud7761.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_228_length_35511_cov_4.360474	contig	NODE_228_length_35511_cov_4.360474:20326..21300 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_08801T0
PFAMs	Spermine_synth
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K08496
KEGG Pathway	ko04130,map04130
Evalue	2.96e-43
EggNOG OGs	2CN4I@1\|root,2QTVA@2759\|Eukaryota,39WIA@33154\|Opisthokonta
Description	spermine spermidine synthase
COG category	S
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7761	Gcaud7761	Gracilaria caudata M_176_S67 male	gene	NODE_228_length_35511_cov_4.360474 20326..21852 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7761.t2.stop1	Gcaud7761.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_228_length_35511_cov_4.360474 20326..20328 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7761.t2.CDS1	Gcaud7761.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_228_length_35511_cov_4.360474 20326..21300 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7761.t2.exon1	Gcaud7761.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_228_length_35511_cov_4.360474 20326..21300 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7761.t2.start1	Gcaud7761.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_228_length_35511_cov_4.360474 21298..21300 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7761.t2	Gcaud7761.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_228_length_35511_cov_4.360474 20326..21300 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_228_length_35511_cov_4.360474:20326..21300-
coding sequence from alignment at NODE_228_length_35511_cov_4.360474:20326..21300-

mRNA sequence

>Gcaud7761.t2 ID=Gcaud7761.t2|Name=Gcaud7761.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=325bp
MSSLVGQLPPLIQPPPIPNDFRLLEQARGPTGLISVVEKRGMFRALLADI
SVLGGYFDASKYYPDSIFSQFYVHEAVRLTDDSPGDRAALCIGVGIGVVA
NGLSVHGVKVTAIDIDPVVARFAEKYFSLQVPVVVEDAVSYVAKASDESY
DYVIHDVFTGGTMPSALFSNEMFESISRVLTSNGVLAVNFVGAVETPKTP
ATEAVSIVFQRLKHVFGNVRAFSDGMDSRMHNIVFFASHDPQKMKFRQPI
EADFLGSPLRRRALTDFLEHEIKAEILEGSGNSSGVDWLMFRGLFDIAED
HRKLMYSLHPKDLWPAMLAIERAR*

spliced messenger RNA

>Gcaud7761.t2 ID=Gcaud7761.t2|Name=Gcaud7761.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:20326..21300- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCGCTTGTTGGACAGCTCCCGCCGCTTATACAGCCGCCTCCAAT
ACCAAACGATTTCCGTTTGTTGGAACAAGCGCGAGGACCGACAGGTTTAA
TCAGCGTCGTTGAAAAGCGGGGAATGTTCAGAGCGCTGCTTGCCGATATT
TCTGTCCTGGGTGGTTACTTTGACGCCTCCAAATACTACCCAGACTCCAT
CTTCTCTCAGTTCTACGTTCATGAGGCAGTTCGACTAACCGACGACAGTC
CGGGCGACAGAGCCGCCCTGTGCATTGGCGTGGGCATCGGCGTCGTAGCA
AACGGCCTTTCAGTGCATGGAGTGAAAGTCACCGCCATAGATATTGACCC
CGTCGTTGCTCGTTTTGCGGAGAAGTACTTCTCTCTTCAGGTCCCGGTTG
TCGTAGAAGACGCTGTGTCATATGTTGCAAAGGCCTCTGATGAAAGCTAT
GACTACGTGATTCACGACGTGTTCACGGGCGGTACCATGCCATCTGCTCT
CTTTTCAAATGAAATGTTCGAGAGTATCTCTCGCGTTCTAACATCGAACG
GCGTGCTTGCTGTGAACTTTGTCGGTGCTGTTGAAACTCCAAAAACACCA
GCGACTGAGGCTGTTTCAATTGTCTTCCAACGGTTAAAACATGTGTTCGG
TAACGTTCGAGCTTTTTCTGACGGGATGGACTCTCGAATGCATAACATTG
TATTCTTTGCATCGCACGATCCACAGAAAATGAAATTCCGACAGCCGATT
GAAGCGGACTTTTTAGGATCGCCATTGAGAAGACGGGCGCTGACCGATTT
TCTTGAACATGAGATTAAAGCAGAGATTCTTGAAGGATCAGGAAACTCTT
CTGGAGTCGATTGGCTCATGTTCCGCGGTCTCTTCGACATTGCAGAAGAC
CATCGCAAGCTGATGTATAGCCTTCACCCCAAGGACCTGTGGCCGGCCAT
GCTGGCTATTGAAAGGGCAAGATAG

protein sequence of Gcaud7761.t2

>Gcaud7761.t2 ID=Gcaud7761.t2|Name=Gcaud7761.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=325bp
MSSLVGQLPPLIQPPPIPNDFRLLEQARGPTGLISVVEKRGMFRALLADI
SVLGGYFDASKYYPDSIFSQFYVHEAVRLTDDSPGDRAALCIGVGIGVVA
NGLSVHGVKVTAIDIDPVVARFAEKYFSLQVPVVVEDAVSYVAKASDESY
DYVIHDVFTGGTMPSALFSNEMFESISRVLTSNGVLAVNFVGAVETPKTP
ATEAVSIVFQRLKHVFGNVRAFSDGMDSRMHNIVFFASHDPQKMKFRQPI
EADFLGSPLRRRALTDFLEHEIKAEILEGSGNSSGVDWLMFRGLFDIAED
HRKLMYSLHPKDLWPAMLAIERAR*

mRNA from alignment at NODE_228_length_35511_cov_4.360474:20326..21300-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7761.t2 ID=Gcaud7761.t2|Name=Gcaud7761.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:20326..21300- (Gracilaria caudata M_176_S67 male)
ATGTCCTCGCTTGTTGGACAGCTCCCGCCGCTTATACAGCCGCCTCCAAT
ACCAAACGATTTCCGTTTGTTGGAACAAGCGCGAGGACCGACAGGTTTAA
TCAGCGTCGTTGAAAAGCGGGGAATGTTCAGAGCGCTGCTTGCCGATATT
TCTGTCCTGGGTGGTTACTTTGACGCCTCCAAATACTACCCAGACTCCAT
CTTCTCTCAGTTCTACGTTCATGAGGCAGTTCGACTAACCGACGACAGTC
CGGGCGACAGAGCCGCCCTGTGCATTGGCGTGGGCATCGGCGTCGTAGCA
AACGGCCTTTCAGTGCATGGAGTGAAAGTCACCGCCATAGATATTGACCC
CGTCGTTGCTCGTTTTGCGGAGAAGTACTTCTCTCTTCAGGTCCCGGTTG
TCGTAGAAGACGCTGTGTCATATGTTGCAAAGGCCTCTGATGAAAGCTAT
GACTACGTGATTCACGACGTGTTCACGGGCGGTACCATGCCATCTGCTCT
CTTTTCAAATGAAATGTTCGAGAGTATCTCTCGCGTTCTAACATCGAACG
GCGTGCTTGCTGTGAACTTTGTCGGTGCTGTTGAAACTCCAAAAACACCA
GCGACTGAGGCTGTTTCAATTGTCTTCCAACGGTTAAAACATGTGTTCGG
TAACGTTCGAGCTTTTTCTGACGGGATGGACTCTCGAATGCATAACATTG
TATTCTTTGCATCGCACGATCCACAGAAAATGAAATTCCGACAGCCGATT
GAAGCGGACTTTTTAGGATCGCCATTGAGAAGACGGGCGCTGACCGATTT
TCTTGAACATGAGATTAAAGCAGAGATTCTTGAAGGATCAGGAAACTCTT
CTGGAGTCGATTGGCTCATGTTCCGCGGTCTCTTCGACATTGCAGAAGAC
CATCGCAAGCTGATGTATAGCCTTCACCCCAAGGACCTGTGGCCGGCCAT
GCTGGCTATTGAAAGGGCAAGATAG

Coding sequence (CDS) from alignment at NODE_228_length_35511_cov_4.360474:20326..21300-

>Gcaud7761.t2 ID=Gcaud7761.t2|Name=Gcaud7761.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=975bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:20326..21300- (Gracilaria caudata M_176_S67 male)
ATGTCCTCGCTTGTTGGACAGCTCCCGCCGCTTATACAGCCGCCTCCAAT
ACCAAACGATTTCCGTTTGTTGGAACAAGCGCGAGGACCGACAGGTTTAA
TCAGCGTCGTTGAAAAGCGGGGAATGTTCAGAGCGCTGCTTGCCGATATT
TCTGTCCTGGGTGGTTACTTTGACGCCTCCAAATACTACCCAGACTCCAT
CTTCTCTCAGTTCTACGTTCATGAGGCAGTTCGACTAACCGACGACAGTC
CGGGCGACAGAGCCGCCCTGTGCATTGGCGTGGGCATCGGCGTCGTAGCA
AACGGCCTTTCAGTGCATGGAGTGAAAGTCACCGCCATAGATATTGACCC
CGTCGTTGCTCGTTTTGCGGAGAAGTACTTCTCTCTTCAGGTCCCGGTTG
TCGTAGAAGACGCTGTGTCATATGTTGCAAAGGCCTCTGATGAAAGCTAT
GACTACGTGATTCACGACGTGTTCACGGGCGGTACCATGCCATCTGCTCT
CTTTTCAAATGAAATGTTCGAGAGTATCTCTCGCGTTCTAACATCGAACG
GCGTGCTTGCTGTGAACTTTGTCGGTGCTGTTGAAACTCCAAAAACACCA
GCGACTGAGGCTGTTTCAATTGTCTTCCAACGGTTAAAACATGTGTTCGG
TAACGTTCGAGCTTTTTCTGACGGGATGGACTCTCGAATGCATAACATTG
TATTCTTTGCATCGCACGATCCACAGAAAATGAAATTCCGACAGCCGATT
GAAGCGGACTTTTTAGGATCGCCATTGAGAAGACGGGCGCTGACCGATTT
TCTTGAACATGAGATTAAAGCAGAGATTCTTGAAGGATCAGGAAACTCTT
CTGGAGTCGATTGGCTCATGTTCCGCGGTCTCTTCGACATTGCAGAAGAC
CATCGCAAGCTGATGTATAGCCTTCACCCCAAGGACCTGTGGCCGGCCAT
GCTGGCTATTGAAAGGGCAAGATAG