Gcaud7756.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7756.t1
Unique Name	Gcaud7756.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	282

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_228_length_35511_cov_4.360474	contig	NODE_228_length_35511_cov_4.360474:9733..10578 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	57918.XP_004296794.1
Max annot lvl	35493\|Streptophyta
Evalue	2.78e-38
EggNOG OGs	28KAS@1\|root,2QSRK@2759\|Eukaryota,37KKN@33090\|Viridiplantae,3G7DU@35493\|Streptophyta,4JE65@91835\|fabids

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7756	Gcaud7756	Gracilaria caudata M_176_S67 male	gene	NODE_228_length_35511_cov_4.360474 9733..10578 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7756.t1.stop1	Gcaud7756.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_228_length_35511_cov_4.360474 9733..9735 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7756.t1.CDS1	Gcaud7756.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_228_length_35511_cov_4.360474 9733..10578 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7756.t1.exon1	Gcaud7756.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_228_length_35511_cov_4.360474 9733..10578 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7756.t1.start1	Gcaud7756.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_228_length_35511_cov_4.360474 10576..10578 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7756.t1	Gcaud7756.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_228_length_35511_cov_4.360474 9733..10578 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_228_length_35511_cov_4.360474:9733..10578-
coding sequence from alignment at NODE_228_length_35511_cov_4.360474:9733..10578-

mRNA sequence

>Gcaud7756.t1 ID=Gcaud7756.t1|Name=Gcaud7756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=282bp
MDTCYVPSPNDLLIVGAGHLGCRIAQQWRKLHTDATIVGETKTDSSHSTL
RDIGISPVLADSSSTTQFPNVVFCVPPRKVVNYGKLVEAAANRAKQKFVF
TSSTSVYGSAKSVTEKTPTGDQEKTAILRHAEESALQFDISLVIRFTGLY
SLERGPHIYWSENNIASGNEKAKMNVVHYDDAASAVVRALCLPRVPERPV
LLIGAPETPTRRQVLDCLLQHPVYKDVVPREFVNEEPYFERRIDGSWSNH
VLNWRPVYSSYAHFLELDAERVRASSLYHDK*

spliced messenger RNA

>Gcaud7756.t1 ID=Gcaud7756.t1|Name=Gcaud7756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=846bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:9733..10578- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACGTGCTATGTCCCCTCACCAAATGATCTACTCATCGTCGGTGC
GGGCCACCTGGGCTGTCGCATAGCGCAACAGTGGCGAAAACTTCATACAG
ATGCTACAATCGTTGGTGAGACAAAGACCGACTCTTCTCATTCCACTCTG
CGCGATATCGGCATATCTCCCGTATTAGCTGACTCTTCTTCAACAACGCA
GTTTCCGAATGTCGTATTTTGCGTTCCGCCGCGCAAAGTTGTAAACTATG
GCAAGCTTGTAGAGGCAGCTGCAAACCGTGCTAAGCAAAAATTTGTGTTC
ACGTCATCCACATCTGTGTACGGCAGTGCAAAATCTGTGACGGAAAAGAC
TCCAACCGGCGACCAAGAAAAAACCGCCATCCTACGTCATGCCGAAGAGT
CAGCTTTGCAATTCGACATTTCGTTGGTTATACGTTTTACGGGACTCTAC
TCTCTCGAAAGAGGCCCACATATCTACTGGAGCGAGAACAATATCGCATC
AGGTAACGAGAAAGCGAAGATGAACGTCGTGCACTATGATGATGCCGCCT
CCGCAGTGGTACGCGCATTATGCCTACCGAGAGTGCCTGAGAGACCAGTG
CTATTGATTGGAGCTCCCGAAACTCCAACTCGACGTCAGGTTTTGGATTG
TTTGTTGCAGCATCCTGTGTACAAAGATGTTGTACCACGGGAGTTCGTGA
ATGAAGAACCGTACTTTGAGAGGCGTATTGATGGAAGTTGGTCCAATCAC
GTTCTTAATTGGCGACCAGTTTATTCTAGCTATGCGCATTTTCTTGAGCT
CGATGCGGAGCGGGTTAGAGCTTCCAGTCTTTATCATGATAAATGA

protein sequence of Gcaud7756.t1

>Gcaud7756.t1 ID=Gcaud7756.t1|Name=Gcaud7756.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=282bp
MDTCYVPSPNDLLIVGAGHLGCRIAQQWRKLHTDATIVGETKTDSSHSTL
RDIGISPVLADSSSTTQFPNVVFCVPPRKVVNYGKLVEAAANRAKQKFVF
TSSTSVYGSAKSVTEKTPTGDQEKTAILRHAEESALQFDISLVIRFTGLY
SLERGPHIYWSENNIASGNEKAKMNVVHYDDAASAVVRALCLPRVPERPV
LLIGAPETPTRRQVLDCLLQHPVYKDVVPREFVNEEPYFERRIDGSWSNH
VLNWRPVYSSYAHFLELDAERVRASSLYHDK*

mRNA from alignment at NODE_228_length_35511_cov_4.360474:9733..10578-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7756.t1 ID=Gcaud7756.t1|Name=Gcaud7756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=846bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:9733..10578- (Gracilaria caudata M_176_S67 male)
ATGGATACGTGCTATGTCCCCTCACCAAATGATCTACTCATCGTCGGTGC
GGGCCACCTGGGCTGTCGCATAGCGCAACAGTGGCGAAAACTTCATACAG
ATGCTACAATCGTTGGTGAGACAAAGACCGACTCTTCTCATTCCACTCTG
CGCGATATCGGCATATCTCCCGTATTAGCTGACTCTTCTTCAACAACGCA
GTTTCCGAATGTCGTATTTTGCGTTCCGCCGCGCAAAGTTGTAAACTATG
GCAAGCTTGTAGAGGCAGCTGCAAACCGTGCTAAGCAAAAATTTGTGTTC
ACGTCATCCACATCTGTGTACGGCAGTGCAAAATCTGTGACGGAAAAGAC
TCCAACCGGCGACCAAGAAAAAACCGCCATCCTACGTCATGCCGAAGAGT
CAGCTTTGCAATTCGACATTTCGTTGGTTATACGTTTTACGGGACTCTAC
TCTCTCGAAAGAGGCCCACATATCTACTGGAGCGAGAACAATATCGCATC
AGGTAACGAGAAAGCGAAGATGAACGTCGTGCACTATGATGATGCCGCCT
CCGCAGTGGTACGCGCATTATGCCTACCGAGAGTGCCTGAGAGACCAGTG
CTATTGATTGGAGCTCCCGAAACTCCAACTCGACGTCAGGTTTTGGATTG
TTTGTTGCAGCATCCTGTGTACAAAGATGTTGTACCACGGGAGTTCGTGA
ATGAAGAACCGTACTTTGAGAGGCGTATTGATGGAAGTTGGTCCAATCAC
GTTCTTAATTGGCGACCAGTTTATTCTAGCTATGCGCATTTTCTTGAGCT
CGATGCGGAGCGGGTTAGAGCTTCCAGTCTTTATCATGATAAATGA

Coding sequence (CDS) from alignment at NODE_228_length_35511_cov_4.360474:9733..10578-

>Gcaud7756.t1 ID=Gcaud7756.t1|Name=Gcaud7756.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=846bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:9733..10578- (Gracilaria caudata M_176_S67 male)
ATGGATACGTGCTATGTCCCCTCACCAAATGATCTACTCATCGTCGGTGC
GGGCCACCTGGGCTGTCGCATAGCGCAACAGTGGCGAAAACTTCATACAG
ATGCTACAATCGTTGGTGAGACAAAGACCGACTCTTCTCATTCCACTCTG
CGCGATATCGGCATATCTCCCGTATTAGCTGACTCTTCTTCAACAACGCA
GTTTCCGAATGTCGTATTTTGCGTTCCGCCGCGCAAAGTTGTAAACTATG
GCAAGCTTGTAGAGGCAGCTGCAAACCGTGCTAAGCAAAAATTTGTGTTC
ACGTCATCCACATCTGTGTACGGCAGTGCAAAATCTGTGACGGAAAAGAC
TCCAACCGGCGACCAAGAAAAAACCGCCATCCTACGTCATGCCGAAGAGT
CAGCTTTGCAATTCGACATTTCGTTGGTTATACGTTTTACGGGACTCTAC
TCTCTCGAAAGAGGCCCACATATCTACTGGAGCGAGAACAATATCGCATC
AGGTAACGAGAAAGCGAAGATGAACGTCGTGCACTATGATGATGCCGCCT
CCGCAGTGGTACGCGCATTATGCCTACCGAGAGTGCCTGAGAGACCAGTG
CTATTGATTGGAGCTCCCGAAACTCCAACTCGACGTCAGGTTTTGGATTG
TTTGTTGCAGCATCCTGTGTACAAAGATGTTGTACCACGGGAGTTCGTGA
ATGAAGAACCGTACTTTGAGAGGCGTATTGATGGAAGTTGGTCCAATCAC
GTTCTTAATTGGCGACCAGTTTATTCTAGCTATGCGCATTTTCTTGAGCT
CGATGCGGAGCGGGTTAGAGCTTCCAGTCTTTATCATGATAAATGA