Gcaud7753.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7753.t1
Unique NameGcaud7753.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_228_length_35511_cov_4.360474contigNODE_228_length_35511_cov_4.360474:1564..2037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI167CT
PFAMsDUF1499
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
Evalue8.49e-24
EggNOG OGs28JPF@1|root,2QS2R@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7753Gcaud7753Gracilaria caudata M_176_S67 malegeneNODE_228_length_35511_cov_4.360474 1564..2037 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7753.t1.start1Gcaud7753.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_228_length_35511_cov_4.360474 1564..1566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7753.t1.CDS1Gcaud7753.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_228_length_35511_cov_4.360474 1564..2037 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7753.t1.exon1Gcaud7753.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_228_length_35511_cov_4.360474 1564..2037 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7753.t1.stop1Gcaud7753.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_228_length_35511_cov_4.360474 2035..2037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7753.t1Gcaud7753.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_228_length_35511_cov_4.360474 1564..2037 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7753.t1 ID=Gcaud7753.t1|Name=Gcaud7753.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=158bp
LQPHHCLAYGLVQGRLDKCRGDMPCVSTASVANPSKFGAPWTYRPQTDDA
DVAWQSLKRALETNSDGGHIVESVDGPQLYYLRAEFPSSFRGTDDVEFRL
IREEALVTYRSASREAIFLYPLQTPINTDKNRTRLLDIRKALGWDEFAGF
NVFGIDQ*
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spliced messenger RNA

>Gcaud7753.t1 ID=Gcaud7753.t1|Name=Gcaud7753.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:1564..2037+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCAACCGCACCATTGTCTCGCCTACGGATTGGTGCAGGGCCGACTGGA
CAAGTGTCGTGGCGATATGCCCTGTGTCAGCACCGCTTCAGTGGCGAATC
CCAGCAAGTTTGGCGCCCCGTGGACTTATCGTCCGCAGACTGATGACGCC
GACGTCGCTTGGCAGTCCTTGAAGCGTGCTTTGGAAACCAACAGCGATGG
CGGACATATTGTGGAGAGCGTGGATGGCCCACAGCTCTATTATTTGAGGG
CCGAGTTCCCGTCCTCGTTTCGCGGAACCGATGATGTGGAGTTTCGTTTG
ATTCGAGAGGAGGCGTTGGTTACCTATCGCAGCGCGTCCCGAGAGGCCAT
CTTTTTGTACCCCTTGCAGACTCCTATTAACACTGACAAGAATAGGACCA
GGCTGTTGGACATTAGAAAGGCGCTTGGATGGGACGAATTTGCTGGCTTT
AATGTGTTTGGTATAGATCAATAG
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protein sequence of Gcaud7753.t1

>Gcaud7753.t1 ID=Gcaud7753.t1|Name=Gcaud7753.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=158bp
LQPHHCLAYGLVQGRLDKCRGDMPCVSTASVANPSKFGAPWTYRPQTDDA
DVAWQSLKRALETNSDGGHIVESVDGPQLYYLRAEFPSSFRGTDDVEFRL
IREEALVTYRSASREAIFLYPLQTPINTDKNRTRLLDIRKALGWDEFAGF
NVFGIDQ*
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mRNA from alignment at NODE_228_length_35511_cov_4.360474:1564..2037+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7753.t1 ID=Gcaud7753.t1|Name=Gcaud7753.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:1564..2037+ (Gracilaria caudata M_176_S67 male)
CTGCAACCGCACCATTGTCTCGCCTACGGATTGGTGCAGGGCCGACTGGA
CAAGTGTCGTGGCGATATGCCCTGTGTCAGCACCGCTTCAGTGGCGAATC
CCAGCAAGTTTGGCGCCCCGTGGACTTATCGTCCGCAGACTGATGACGCC
GACGTCGCTTGGCAGTCCTTGAAGCGTGCTTTGGAAACCAACAGCGATGG
CGGACATATTGTGGAGAGCGTGGATGGCCCACAGCTCTATTATTTGAGGG
CCGAGTTCCCGTCCTCGTTTCGCGGAACCGATGATGTGGAGTTTCGTTTG
ATTCGAGAGGAGGCGTTGGTTACCTATCGCAGCGCGTCCCGAGAGGCCAT
CTTTTTGTACCCCTTGCAGACTCCTATTAACACTGACAAGAATAGGACCA
GGCTGTTGGACATTAGAAAGGCGCTTGGATGGGACGAATTTGCTGGCTTT
AATGTGTTTGGTATAGATCAATAG
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Coding sequence (CDS) from alignment at NODE_228_length_35511_cov_4.360474:1564..2037+

>Gcaud7753.t1 ID=Gcaud7753.t1|Name=Gcaud7753.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=474bp|location=Sequence derived from alignment at NODE_228_length_35511_cov_4.360474:1564..2037+ (Gracilaria caudata M_176_S67 male)
CTGCAACCGCACCATTGTCTCGCCTACGGATTGGTGCAGGGCCGACTGGA
CAAGTGTCGTGGCGATATGCCCTGTGTCAGCACCGCTTCAGTGGCGAATC
CCAGCAAGTTTGGCGCCCCGTGGACTTATCGTCCGCAGACTGATGACGCC
GACGTCGCTTGGCAGTCCTTGAAGCGTGCTTTGGAAACCAACAGCGATGG
CGGACATATTGTGGAGAGCGTGGATGGCCCACAGCTCTATTATTTGAGGG
CCGAGTTCCCGTCCTCGTTTCGCGGAACCGATGATGTGGAGTTTCGTTTG
ATTCGAGAGGAGGCGTTGGTTACCTATCGCAGCGCGTCCCGAGAGGCCAT
CTTTTTGTACCCCTTGCAGACTCCTATTAACACTGACAAGAATAGGACCA
GGCTGTTGGACATTAGAAAGGCGCTTGGATGGGACGAATTTGCTGGCTTT
AATGTGTTTGGTATAGATCAATAG
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