Gcaud7750.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7750.t1
Unique Name	Gcaud7750.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	768

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1750_length_8626_cov_4.465026	contig	NODE_1750_length_8626_cov_4.465026:2808..5111 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7750	Gcaud7750	Gracilaria caudata M_176_S67 male	gene	NODE_1750_length_8626_cov_4.465026 2808..5111 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7750.t1.stop1	Gcaud7750.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1750_length_8626_cov_4.465026 2808..2810 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7750.t1.CDS1	Gcaud7750.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1750_length_8626_cov_4.465026 2808..5111 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7750.t1.exon1	Gcaud7750.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1750_length_8626_cov_4.465026 2808..5111 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7750.t1.start1	Gcaud7750.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1750_length_8626_cov_4.465026 5109..5111 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7750.t1	Gcaud7750.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1750_length_8626_cov_4.465026 2808..5111 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1750_length_8626_cov_4.465026:2808..5111-
coding sequence from alignment at NODE_1750_length_8626_cov_4.465026:2808..5111-

mRNA sequence

>Gcaud7750.t1 ID=Gcaud7750.t1|Name=Gcaud7750.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp
MDEVLSLKPSVAIRRLQTAVRESQGTSRASYAAKNRPEWWKENVSVTLPD
GSHSKTGAFVSHSKCAWKLKQVQAALVLFYRHWEENGSSGSEECSEWDSP
PPRKAKRAPVKAESRPCRTRKKTNPAPVENAQLPQKFTSEPLKGASKPCE
NKKSVTFKEKHELNVHHTPPRNLRRNRSIPESSKNSKQNARTTSHRNEKE
ELSEMQLAPEVESKQSNPSSSSEDQAKTKPSASQVRRVAPRRLVKKTNVR
AAPGASPTGPNSARHTLPLPSRTDASAVPKENRRISKRRSKKQPRKAADV
TTKHSPELIAIDSDAPPETSSAANLESTPPGRIRIISRRRSSRLSTTEDL
TTEDLTPKRASGVKRRLDHTLSRIRTPLAPLQNNGNVNVVEDVKRRKTAG
KKTVAVRTARKSCRKENTESKISFGETSSEKENYCPGHATGTNGEGSGEQ
LVFSARRSLRLRPSPRASHSGNASNRENIENVSTASARGNDDEDFDNDTG
NEGDYNDSNNHDCEDVDENEETLTKEEKKEQYDLIMSAVATLEREHDNCI
AKLEEHRQRLVEDLQKEHGHKRNKLDQQYQMRLMHMSERERSTLVGHMVF
ELEGDPNNLLVKDVENAADCILNDSTDGPGIGDGSNNTQMELQVPKTPKA
RSLRQAAVAAATERKRVNRERYEATRPSVRRSTRKAAQTATARTREILTS
AARPKSVASITHEAGAVGNRIQRETELSTPVLEAVQSEISRLRGLPNGRE
RLRALKAQLDGALSEIV*

spliced messenger RNA

>Gcaud7750.t1 ID=Gcaud7750.t1|Name=Gcaud7750.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2304bp|location=Sequence derived from alignment at NODE_1750_length_8626_cov_4.465026:2808..5111- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGGTTTTGTCATTGAAACCCAGTGTCGCCATCAGGCGTTTGCA
GACGGCTGTTCGCGAGTCACAGGGCACTAGTCGTGCTTCCTACGCGGCAA
AGAATCGTCCAGAATGGTGGAAGGAGAATGTTAGCGTCACACTACCAGAT
GGTTCTCACTCGAAAACTGGTGCTTTTGTGTCTCACTCCAAGTGCGCTTG
GAAACTGAAGCAAGTCCAGGCTGCGTTGGTGCTCTTTTATCGCCACTGGG
AAGAAAATGGTTCTTCTGGGTCAGAAGAATGTTCAGAATGGGACAGTCCG
CCGCCAAGAAAGGCAAAACGCGCGCCAGTCAAAGCAGAATCGCGGCCATG
CCGAACAAGAAAAAAAACAAACCCAGCTCCTGTTGAAAACGCCCAGCTGC
CACAGAAGTTCACATCAGAGCCTCTAAAAGGTGCATCGAAACCATGCGAG
AACAAAAAGTCTGTTACGTTTAAAGAAAAGCACGAGCTGAATGTTCATCA
CACACCGCCGCGTAATCTCCGACGAAACAGAAGCATTCCAGAATCCAGCA
AAAACTCAAAGCAAAATGCTCGTACCACGTCCCATCGTAATGAGAAGGAA
GAATTGAGTGAAATGCAACTTGCGCCTGAAGTGGAAAGCAAACAATCAAA
TCCGTCTTCCTCATCCGAAGACCAGGCCAAAACGAAGCCATCTGCGTCTC
AAGTGCGAAGAGTAGCACCTAGAAGGCTGGTGAAGAAAACGAACGTGAGG
GCGGCCCCGGGTGCGAGCCCTACTGGGCCAAATTCTGCTAGACACACTTT
GCCACTTCCTTCTCGGACCGATGCCTCGGCGGTTCCTAAGGAGAACCGTC
GAATTTCGAAGAGGAGAAGTAAGAAGCAACCGCGCAAGGCCGCTGATGTC
ACTACAAAACATTCACCAGAACTCATTGCTATTGATAGTGATGCGCCACC
CGAAACCAGCTCTGCTGCTAACTTGGAAAGCACTCCACCCGGCCGCATAC
GTATTATCAGCCGAAGACGGAGTTCAAGGCTTTCTACAACAGAAGATTTA
ACAACAGAAGATTTAACACCAAAACGGGCGTCTGGAGTGAAGAGGCGCTT
GGATCACACCTTGTCGAGGATTAGAACTCCTCTTGCCCCACTACAGAATA
ACGGAAATGTAAATGTGGTTGAAGATGTGAAACGGAGGAAAACTGCTGGC
AAGAAAACGGTGGCAGTCAGGACTGCTCGAAAGAGCTGCAGAAAGGAAAA
TACTGAATCTAAGATATCTTTTGGCGAGACCAGTAGTGAAAAGGAGAACT
ATTGTCCCGGACACGCTACTGGAACGAATGGCGAAGGAAGCGGCGAGCAA
CTGGTGTTTAGTGCACGACGCAGTCTTAGACTGCGACCATCGCCGCGAGC
AAGTCATTCAGGAAACGCAAGTAATCGAGAGAACATAGAAAATGTTTCGA
CTGCAAGCGCGAGAGGCAACGACGATGAGGACTTTGACAATGACACGGGT
AACGAAGGAGATTATAATGATTCGAACAACCATGACTGTGAGGATGTGGA
CGAAAACGAAGAGACGCTGACAAAGGAAGAGAAAAAAGAACAGTACGACC
TAATCATGTCCGCCGTTGCAACTTTGGAAAGGGAACATGATAACTGTATC
GCAAAATTGGAGGAACATCGACAGAGACTGGTTGAAGACTTGCAAAAAGA
ACATGGACACAAACGGAACAAACTGGACCAGCAGTACCAAATGAGACTCA
TGCATATGAGCGAACGGGAGCGATCAACCTTGGTGGGACACATGGTGTTT
GAGCTTGAAGGTGACCCCAATAACCTGTTGGTAAAGGATGTTGAAAATGC
TGCAGACTGCATTCTGAACGACAGCACTGATGGACCAGGAATAGGAGATG
GTTCGAATAACACACAAATGGAATTGCAAGTACCGAAGACACCCAAAGCA
CGCTCACTACGCCAGGCTGCGGTCGCTGCTGCCACCGAACGGAAGCGAGT
GAATCGAGAACGGTATGAGGCAACTCGCCCAAGCGTAAGACGCTCTACTC
GAAAGGCAGCGCAAACCGCCACGGCACGCACGAGAGAAATCCTAACGAGT
GCAGCTCGACCGAAGAGCGTAGCGAGCATTACGCACGAGGCGGGGGCTGT
TGGGAATCGTATACAGCGTGAGACAGAGCTCAGTACTCCGGTACTGGAGG
CGGTTCAGAGCGAGATCAGTCGATTGAGAGGGTTGCCGAATGGGAGGGAG
CGTCTGAGGGCGTTGAAGGCGCAGTTGGATGGCGCTTTAAGTGAGATTGT
TTGA

protein sequence of Gcaud7750.t1

>Gcaud7750.t1 ID=Gcaud7750.t1|Name=Gcaud7750.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=768bp
MDEVLSLKPSVAIRRLQTAVRESQGTSRASYAAKNRPEWWKENVSVTLPD
GSHSKTGAFVSHSKCAWKLKQVQAALVLFYRHWEENGSSGSEECSEWDSP
PPRKAKRAPVKAESRPCRTRKKTNPAPVENAQLPQKFTSEPLKGASKPCE
NKKSVTFKEKHELNVHHTPPRNLRRNRSIPESSKNSKQNARTTSHRNEKE
ELSEMQLAPEVESKQSNPSSSSEDQAKTKPSASQVRRVAPRRLVKKTNVR
AAPGASPTGPNSARHTLPLPSRTDASAVPKENRRISKRRSKKQPRKAADV
TTKHSPELIAIDSDAPPETSSAANLESTPPGRIRIISRRRSSRLSTTEDL
TTEDLTPKRASGVKRRLDHTLSRIRTPLAPLQNNGNVNVVEDVKRRKTAG
KKTVAVRTARKSCRKENTESKISFGETSSEKENYCPGHATGTNGEGSGEQ
LVFSARRSLRLRPSPRASHSGNASNRENIENVSTASARGNDDEDFDNDTG
NEGDYNDSNNHDCEDVDENEETLTKEEKKEQYDLIMSAVATLEREHDNCI
AKLEEHRQRLVEDLQKEHGHKRNKLDQQYQMRLMHMSERERSTLVGHMVF
ELEGDPNNLLVKDVENAADCILNDSTDGPGIGDGSNNTQMELQVPKTPKA
RSLRQAAVAAATERKRVNRERYEATRPSVRRSTRKAAQTATARTREILTS
AARPKSVASITHEAGAVGNRIQRETELSTPVLEAVQSEISRLRGLPNGRE
RLRALKAQLDGALSEIV*

mRNA from alignment at NODE_1750_length_8626_cov_4.465026:2808..5111-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7750.t1 ID=Gcaud7750.t1|Name=Gcaud7750.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2304bp|location=Sequence derived from alignment at NODE_1750_length_8626_cov_4.465026:2808..5111- (Gracilaria caudata M_176_S67 male)
ATGGATGAGGTTTTGTCATTGAAACCCAGTGTCGCCATCAGGCGTTTGCA
GACGGCTGTTCGCGAGTCACAGGGCACTAGTCGTGCTTCCTACGCGGCAA
AGAATCGTCCAGAATGGTGGAAGGAGAATGTTAGCGTCACACTACCAGAT
GGTTCTCACTCGAAAACTGGTGCTTTTGTGTCTCACTCCAAGTGCGCTTG
GAAACTGAAGCAAGTCCAGGCTGCGTTGGTGCTCTTTTATCGCCACTGGG
AAGAAAATGGTTCTTCTGGGTCAGAAGAATGTTCAGAATGGGACAGTCCG
CCGCCAAGAAAGGCAAAACGCGCGCCAGTCAAAGCAGAATCGCGGCCATG
CCGAACAAGAAAAAAAACAAACCCAGCTCCTGTTGAAAACGCCCAGCTGC
CACAGAAGTTCACATCAGAGCCTCTAAAAGGTGCATCGAAACCATGCGAG
AACAAAAAGTCTGTTACGTTTAAAGAAAAGCACGAGCTGAATGTTCATCA
CACACCGCCGCGTAATCTCCGACGAAACAGAAGCATTCCAGAATCCAGCA
AAAACTCAAAGCAAAATGCTCGTACCACGTCCCATCGTAATGAGAAGGAA
GAATTGAGTGAAATGCAACTTGCGCCTGAAGTGGAAAGCAAACAATCAAA
TCCGTCTTCCTCATCCGAAGACCAGGCCAAAACGAAGCCATCTGCGTCTC
AAGTGCGAAGAGTAGCACCTAGAAGGCTGGTGAAGAAAACGAACGTGAGG
GCGGCCCCGGGTGCGAGCCCTACTGGGCCAAATTCTGCTAGACACACTTT
GCCACTTCCTTCTCGGACCGATGCCTCGGCGGTTCCTAAGGAGAACCGTC
GAATTTCGAAGAGGAGAAGTAAGAAGCAACCGCGCAAGGCCGCTGATGTC
ACTACAAAACATTCACCAGAACTCATTGCTATTGATAGTGATGCGCCACC
CGAAACCAGCTCTGCTGCTAACTTGGAAAGCACTCCACCCGGCCGCATAC
GTATTATCAGCCGAAGACGGAGTTCAAGGCTTTCTACAACAGAAGATTTA
ACAACAGAAGATTTAACACCAAAACGGGCGTCTGGAGTGAAGAGGCGCTT
GGATCACACCTTGTCGAGGATTAGAACTCCTCTTGCCCCACTACAGAATA
ACGGAAATGTAAATGTGGTTGAAGATGTGAAACGGAGGAAAACTGCTGGC
AAGAAAACGGTGGCAGTCAGGACTGCTCGAAAGAGCTGCAGAAAGGAAAA
TACTGAATCTAAGATATCTTTTGGCGAGACCAGTAGTGAAAAGGAGAACT
ATTGTCCCGGACACGCTACTGGAACGAATGGCGAAGGAAGCGGCGAGCAA
CTGGTGTTTAGTGCACGACGCAGTCTTAGACTGCGACCATCGCCGCGAGC
AAGTCATTCAGGAAACGCAAGTAATCGAGAGAACATAGAAAATGTTTCGA
CTGCAAGCGCGAGAGGCAACGACGATGAGGACTTTGACAATGACACGGGT
AACGAAGGAGATTATAATGATTCGAACAACCATGACTGTGAGGATGTGGA
CGAAAACGAAGAGACGCTGACAAAGGAAGAGAAAAAAGAACAGTACGACC
TAATCATGTCCGCCGTTGCAACTTTGGAAAGGGAACATGATAACTGTATC
GCAAAATTGGAGGAACATCGACAGAGACTGGTTGAAGACTTGCAAAAAGA
ACATGGACACAAACGGAACAAACTGGACCAGCAGTACCAAATGAGACTCA
TGCATATGAGCGAACGGGAGCGATCAACCTTGGTGGGACACATGGTGTTT
GAGCTTGAAGGTGACCCCAATAACCTGTTGGTAAAGGATGTTGAAAATGC
TGCAGACTGCATTCTGAACGACAGCACTGATGGACCAGGAATAGGAGATG
GTTCGAATAACACACAAATGGAATTGCAAGTACCGAAGACACCCAAAGCA
CGCTCACTACGCCAGGCTGCGGTCGCTGCTGCCACCGAACGGAAGCGAGT
GAATCGAGAACGGTATGAGGCAACTCGCCCAAGCGTAAGACGCTCTACTC
GAAAGGCAGCGCAAACCGCCACGGCACGCACGAGAGAAATCCTAACGAGT
GCAGCTCGACCGAAGAGCGTAGCGAGCATTACGCACGAGGCGGGGGCTGT
TGGGAATCGTATACAGCGTGAGACAGAGCTCAGTACTCCGGTACTGGAGG
CGGTTCAGAGCGAGATCAGTCGATTGAGAGGGTTGCCGAATGGGAGGGAG
CGTCTGAGGGCGTTGAAGGCGCAGTTGGATGGCGCTTTAAGTGAGATTGT
TTGA

Coding sequence (CDS) from alignment at NODE_1750_length_8626_cov_4.465026:2808..5111-

>Gcaud7750.t1 ID=Gcaud7750.t1|Name=Gcaud7750.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2304bp|location=Sequence derived from alignment at NODE_1750_length_8626_cov_4.465026:2808..5111- (Gracilaria caudata M_176_S67 male)
ATGGATGAGGTTTTGTCATTGAAACCCAGTGTCGCCATCAGGCGTTTGCA
GACGGCTGTTCGCGAGTCACAGGGCACTAGTCGTGCTTCCTACGCGGCAA
AGAATCGTCCAGAATGGTGGAAGGAGAATGTTAGCGTCACACTACCAGAT
GGTTCTCACTCGAAAACTGGTGCTTTTGTGTCTCACTCCAAGTGCGCTTG
GAAACTGAAGCAAGTCCAGGCTGCGTTGGTGCTCTTTTATCGCCACTGGG
AAGAAAATGGTTCTTCTGGGTCAGAAGAATGTTCAGAATGGGACAGTCCG
CCGCCAAGAAAGGCAAAACGCGCGCCAGTCAAAGCAGAATCGCGGCCATG
CCGAACAAGAAAAAAAACAAACCCAGCTCCTGTTGAAAACGCCCAGCTGC
CACAGAAGTTCACATCAGAGCCTCTAAAAGGTGCATCGAAACCATGCGAG
AACAAAAAGTCTGTTACGTTTAAAGAAAAGCACGAGCTGAATGTTCATCA
CACACCGCCGCGTAATCTCCGACGAAACAGAAGCATTCCAGAATCCAGCA
AAAACTCAAAGCAAAATGCTCGTACCACGTCCCATCGTAATGAGAAGGAA
GAATTGAGTGAAATGCAACTTGCGCCTGAAGTGGAAAGCAAACAATCAAA
TCCGTCTTCCTCATCCGAAGACCAGGCCAAAACGAAGCCATCTGCGTCTC
AAGTGCGAAGAGTAGCACCTAGAAGGCTGGTGAAGAAAACGAACGTGAGG
GCGGCCCCGGGTGCGAGCCCTACTGGGCCAAATTCTGCTAGACACACTTT
GCCACTTCCTTCTCGGACCGATGCCTCGGCGGTTCCTAAGGAGAACCGTC
GAATTTCGAAGAGGAGAAGTAAGAAGCAACCGCGCAAGGCCGCTGATGTC
ACTACAAAACATTCACCAGAACTCATTGCTATTGATAGTGATGCGCCACC
CGAAACCAGCTCTGCTGCTAACTTGGAAAGCACTCCACCCGGCCGCATAC
GTATTATCAGCCGAAGACGGAGTTCAAGGCTTTCTACAACAGAAGATTTA
ACAACAGAAGATTTAACACCAAAACGGGCGTCTGGAGTGAAGAGGCGCTT
GGATCACACCTTGTCGAGGATTAGAACTCCTCTTGCCCCACTACAGAATA
ACGGAAATGTAAATGTGGTTGAAGATGTGAAACGGAGGAAAACTGCTGGC
AAGAAAACGGTGGCAGTCAGGACTGCTCGAAAGAGCTGCAGAAAGGAAAA
TACTGAATCTAAGATATCTTTTGGCGAGACCAGTAGTGAAAAGGAGAACT
ATTGTCCCGGACACGCTACTGGAACGAATGGCGAAGGAAGCGGCGAGCAA
CTGGTGTTTAGTGCACGACGCAGTCTTAGACTGCGACCATCGCCGCGAGC
AAGTCATTCAGGAAACGCAAGTAATCGAGAGAACATAGAAAATGTTTCGA
CTGCAAGCGCGAGAGGCAACGACGATGAGGACTTTGACAATGACACGGGT
AACGAAGGAGATTATAATGATTCGAACAACCATGACTGTGAGGATGTGGA
CGAAAACGAAGAGACGCTGACAAAGGAAGAGAAAAAAGAACAGTACGACC
TAATCATGTCCGCCGTTGCAACTTTGGAAAGGGAACATGATAACTGTATC
GCAAAATTGGAGGAACATCGACAGAGACTGGTTGAAGACTTGCAAAAAGA
ACATGGACACAAACGGAACAAACTGGACCAGCAGTACCAAATGAGACTCA
TGCATATGAGCGAACGGGAGCGATCAACCTTGGTGGGACACATGGTGTTT
GAGCTTGAAGGTGACCCCAATAACCTGTTGGTAAAGGATGTTGAAAATGC
TGCAGACTGCATTCTGAACGACAGCACTGATGGACCAGGAATAGGAGATG
GTTCGAATAACACACAAATGGAATTGCAAGTACCGAAGACACCCAAAGCA
CGCTCACTACGCCAGGCTGCGGTCGCTGCTGCCACCGAACGGAAGCGAGT
GAATCGAGAACGGTATGAGGCAACTCGCCCAAGCGTAAGACGCTCTACTC
GAAAGGCAGCGCAAACCGCCACGGCACGCACGAGAGAAATCCTAACGAGT
GCAGCTCGACCGAAGAGCGTAGCGAGCATTACGCACGAGGCGGGGGCTGT
TGGGAATCGTATACAGCGTGAGACAGAGCTCAGTACTCCGGTACTGGAGG
CGGTTCAGAGCGAGATCAGTCGATTGAGAGGGTTGCCGAATGGGAGGGAG
CGTCTGAGGGCGTTGAAGGCGCAGTTGGATGGCGCTTTAAGTGAGATTGT
TTGA