Gcaud7747.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7747.t1
Unique NameGcaud7747.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1534_length_9888_cov_5.100643contigNODE_1534_length_9888_cov_5.100643:4488..5064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_009861924.1
Preferred namemig-6
PFAMsADAM_spacer1,Kunitz_BPTI,PLAC,TSP_1,WAP
Max annot lvl33208|Metazoa
GOsGO:0000003,GO:0000902,GO:0002119,GO:0002164,GO:0005575,GO:0005576,GO:0005604,GO:0007275,GO:0008150,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009987,GO:0016043,GO:0031012,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0044421,GO:0048598,GO:0048856,GO:0048869,GO:0062023,GO:0071840
Evalue8.6e-07
EggNOG OGsKOG3538@1|root,KOG4597@2759|Eukaryota,38EQB@33154|Opisthokonta,3BB8S@33208|Metazoa,3E52Q@33213|Bilateria,485NV@7711|Chordata
DescriptionBPTI/Kunitz family of serine protease inhibitors.
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7747Gcaud7747Gracilaria caudata M_176_S67 malegeneNODE_1534_length_9888_cov_5.100643 4488..5064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7747.t1Gcaud7747.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1534_length_9888_cov_5.100643 4488..5064 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7747.t1.stop1Gcaud7747.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1534_length_9888_cov_5.100643 4488..4490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7747.t1.CDS1Gcaud7747.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1534_length_9888_cov_5.100643 4488..4592 -
Gcaud7747.t1.CDS2Gcaud7747.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1534_length_9888_cov_5.100643 4672..5064 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7747.t1.exon1Gcaud7747.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1534_length_9888_cov_5.100643 4488..4592 -
Gcaud7747.t1.exon2Gcaud7747.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1534_length_9888_cov_5.100643 4672..5064 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7747.t1.intron1Gcaud7747.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1534_length_9888_cov_5.100643 4593..4671 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7747.t1.start1Gcaud7747.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1534_length_9888_cov_5.100643 5062..5064 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7747.t1 ID=Gcaud7747.t1|Name=Gcaud7747.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=166bp
MASQNEYVSINNPGERLPPTHPGVLQNRSPISYRPSNRALIAAGVFIVVC
IAFVSMNRPNHAYYPSFRSSGWSLPSRSSFPASAYYGRMNMNAPINSRYI
PNQVDENCEGNGESGACYAHITRYYFDKKLKDCKTFVYGGCPYPSGVQPG
FDSYGECMGACVDFY*
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spliced messenger RNA

>Gcaud7747.t1 ID=Gcaud7747.t1|Name=Gcaud7747.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=498bp|location=Sequence derived from alignment at NODE_1534_length_9888_cov_5.100643:4488..5064- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCCAGAATGAGTACGTCTCCATCAACAACCCCGGGGAACGCCT
TCCTCCCACCCATCCCGGTGTCCTGCAAAACCGCTCGCCCATCTCCTATC
GCCCAAGTAATCGAGCTCTGATTGCTGCCGGGGTATTCATTGTGGTCTGC
ATAGCATTCGTCTCAATGAATCGCCCTAATCATGCTTACTATCCTTCGTT
CCGGTCTTCTGGTTGGTCCCTTCCCTCGCGCTCTTCGTTTCCTGCGAGCG
CGTATTACGGCAGAATGAACATGAATGCACCGATTAACTCGCGTTACATC
CCGAATCAAGTGGACGAGAACTGTGAAGGAAACGGTGAAAGCGGTGCGTG
TTACGCACACATTACGAGGTATTACTTTGATAAGAAATTGAAGGATTGCA
AAACGTTTGTGTACGGAGGATGTCCGTATCCCTCCGGAGTGCAGCCGGGC
TTTGATTCATACGGGGAATGTATGGGAGCATGCGTAGACTTCTATTAG
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protein sequence of Gcaud7747.t1

>Gcaud7747.t1 ID=Gcaud7747.t1|Name=Gcaud7747.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=166bp
MASQNEYVSINNPGERLPPTHPGVLQNRSPISYRPSNRALIAAGVFIVVC
IAFVSMNRPNHAYYPSFRSSGWSLPSRSSFPASAYYGRMNMNAPINSRYI
PNQVDENCEGNGESGACYAHITRYYFDKKLKDCKTFVYGGCPYPSGVQPG
FDSYGECMGACVDFY*
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mRNA from alignment at NODE_1534_length_9888_cov_5.100643:4488..5064-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7747.t1 ID=Gcaud7747.t1|Name=Gcaud7747.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=577bp|location=Sequence derived from alignment at NODE_1534_length_9888_cov_5.100643:4488..5064- (Gracilaria caudata M_176_S67 male)
ATGGCGTCCCAGAATGAGTACGTCTCCATCAACAACCCCGGGGAACGCCT
TCCTCCCACCCATCCCGGTGTCCTGCAAAACCGCTCGCCCATCTCCTATC
GCCCAAGTAATCGAGCTCTGATTGCTGCCGGGGTATTCATTGTGGTCTGC
ATAGCATTCGTCTCAATGAATCGCCCTAATCATGCTTACTATCCTTCGTT
CCGGTCTTCTGGTTGGTCCCTTCCCTCGCGCTCTTCGTTTCCTGCGAGCG
CGTATTACGGCAGAATGAACATGAATGCACCGATTAACTCGCGTTACATC
CCGAATCAAGTGGACGAGAACTGTGAAGGAAACGGTGAAAGCGGTGCGTG
TTACGCACACATTACGAGGTATTACTTTGATAAGAAATTGAAGGTAAGTG
CCACATGAGTCATTTCGAGCGCGTGAGAGGGACATTTGTTCTGACAACGG
TGTATCTGCCTGTGTACGCAAGGATTGCAAAACGTTTGTGTACGGAGGAT
GTCCGTATCCCTCCGGAGTGCAGCCGGGCTTTGATTCATACGGGGAATGT
ATGGGAGCATGCGTAGACTTCTATTAG
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Coding sequence (CDS) from alignment at NODE_1534_length_9888_cov_5.100643:4488..5064-

>Gcaud7747.t1 ID=Gcaud7747.t1|Name=Gcaud7747.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=498bp|location=Sequence derived from alignment at NODE_1534_length_9888_cov_5.100643:4488..5064- (Gracilaria caudata M_176_S67 male)
ATGGCGTCCCAGAATGAGTACGTCTCCATCAACAACCCCGGGGAACGCCT
TCCTCCCACCCATCCCGGTGTCCTGCAAAACCGCTCGCCCATCTCCTATC
GCCCAAGTAATCGAGCTCTGATTGCTGCCGGGGTATTCATTGTGGTCTGC
ATAGCATTCGTCTCAATGAATCGCCCTAATCATGCTTACTATCCTTCGTT
CCGGTCTTCTGGTTGGTCCCTTCCCTCGCGCTCTTCGTTTCCTGCGAGCG
CGTATTACGGCAGAATGAACATGAATGCACCGATTAACTCGCGTTACATC
CCGAATCAAGTGGACGAGAACTGTGAAGGAAACGGTGAAAGCGGTGCGTG
TTACGCACACATTACGAGGTATTACTTTGATAAGAAATTGAAGGATTGCA
AAACGTTTGTGTACGGAGGATGTCCGTATCCCTCCGGAGTGCAGCCGGGC
TTTGATTCATACGGGGAATGTATGGGAGCATGCGTAGACTTCTATTAG
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