Gcaud7741.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7741.t1
Unique Name	Gcaud7741.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	491

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1881_length_7908_cov_4.074965	contig	NODE_1881_length_7908_cov_4.074965:3488..5283 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2JQK0
PFAMs	WD40
Max annot lvl	4751\|Fungi
Evalue	8.24e-23
EggNOG OGs	KOG3914@1\|root,KOG3914@2759\|Eukaryota,3948P@33154\|Opisthokonta,3Q1PH@4751\|Fungi,1GX4A@112252\|Fungi incertae sedis
Description	WD domain, G-beta repeat
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7741	Gcaud7741	Gracilaria caudata M_176_S67 male	gene	NODE_1881_length_7908_cov_4.074965 3488..5283 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7741.t1	Gcaud7741.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1881_length_7908_cov_4.074965 3488..5283 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7741.t1.start1	Gcaud7741.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1881_length_7908_cov_4.074965 3488..3490 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7741.t1.CDS1	Gcaud7741.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1881_length_7908_cov_4.074965 3488..3596 +
Gcaud7741.t1.CDS2	Gcaud7741.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1881_length_7908_cov_4.074965 3729..4209 +
Gcaud7741.t1.CDS3	Gcaud7741.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1881_length_7908_cov_4.074965 4401..5283 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7741.t1.exon1	Gcaud7741.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1881_length_7908_cov_4.074965 3488..3596 +
Gcaud7741.t1.exon2	Gcaud7741.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1881_length_7908_cov_4.074965 3729..4209 +
Gcaud7741.t1.exon3	Gcaud7741.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1881_length_7908_cov_4.074965 4401..5283 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7741.t1.intron1	Gcaud7741.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1881_length_7908_cov_4.074965 3597..3728 +
Gcaud7741.t1.intron2	Gcaud7741.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1881_length_7908_cov_4.074965 4210..4400 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7741.t1.stop1	Gcaud7741.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1881_length_7908_cov_4.074965 5281..5283 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1881_length_7908_cov_4.074965:3488..5283+
coding sequence from alignment at NODE_1881_length_7908_cov_4.074965:3488..5283+

mRNA sequence

>Gcaud7741.t1 ID=Gcaud7741.t1|Name=Gcaud7741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=491bp
MKMWYEGWDPSDGSSEVGPVAHLKPANRLQILVFSIVLPGAEASHHHIMA
CAKVEQIEFYLKVANISVAAKRVNRPIWAYRRLARRRLVLKANVQISLWR
AVEIPVWKLGMTTAHVNSGSSPPPPLTQLLTVLQTEPVFTRDRCLYVGSE
RLEPQNVLAATVATLSQDRQLLAVATLQKQVTVFERIDRDWQSRCTHTLP
KRITAVVIDNAATHVVVSDAVGDVYRLPFDQSLNLREDHIQNDFLLLGHF
STITDISLTTALIATADRDNKIRVSRYPLSYVIEAFCLSHTQFVTTLQWT
LVPNLLLSAAGDCTVRLWDGPKGQHLDCLRLSESNVIQEALTAGVQPLVV
KFAMHPFNKDVAFFALHKSSAVFILFGLQERKLKGVALASSFGRERFVSG
LSTSTKGLIYVSLRDEACIMHAPLSSSSETACGLLTFTVQKHLKAAAESN
CCTLAEHEEKDLLRFNWLARQRKKDMVHNWKGKKRRHVDI*

spliced messenger RNA

>Gcaud7741.t1 ID=Gcaud7741.t1|Name=Gcaud7741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at NODE_1881_length_7908_cov_4.074965:3488..5283+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATGTGGTACGAGGGATGGGACCCATCCGATGGGTCTTCTGAAGT
TGGGCCAGTAGCCCATCTAAAACCTGCAAATCGTTTGCAGATCCTCGTGT
TTTCCATTGTTCTTCCAGGAGCAGAAGCCAGTCATCACCACATCATGGCA
TGCGCGAAAGTTGAGCAAATAGAATTCTATTTAAAAGTGGCAAATATTTC
GGTAGCAGCCAAAAGGGTTAACAGACCTATCTGGGCTTACAGAAGGCTTG
CTCGTCGTCGCCTGGTATTGAAAGCAAACGTCCAAATTTCACTATGGCGG
GCTGTGGAGATCCCTGTTTGGAAGCTCGGCATGACGACCGCCCATGTCAA
CAGTGGCTCCAGTCCGCCTCCGCCGTTGACTCAACTTCTGACGGTGCTTC
AGACAGAGCCCGTTTTCACGCGAGATCGTTGCTTGTACGTTGGAAGCGAG
CGACTAGAGCCCCAAAATGTTCTTGCTGCCACCGTAGCAACGCTATCACA
AGATCGGCAGCTTCTTGCAGTGGCAACGCTTCAGAAGCAAGTCACAGTAT
TCGAGAGAATAGATCGAGACTGGCAGTCTCGTTGTACGCATACTCTTCCT
AAGCGAATTACCGCTGTTGTCATTGACAATGCTGCTACGCACGTCGTTGT
TTCCGATGCCGTTGGCGATGTATATCGATTACCGTTTGATCAATCCTTGA
ATTTAAGGGAGGATCACATTCAAAATGATTTTCTCTTGCTGGGACACTTT
TCTACAATAACTGACATATCACTCACAACCGCTCTCATTGCAACTGCCGA
CCGCGACAACAAGATACGGGTGTCGCGCTATCCGCTTTCGTATGTGATCG
AGGCGTTCTGTCTATCACACACCCAGTTTGTCACAACTCTACAGTGGACT
CTAGTGCCGAATCTTTTGCTTTCTGCTGCTGGCGATTGTACTGTACGGCT
CTGGGACGGTCCAAAGGGACAGCATTTAGATTGCTTGCGGTTGTCTGAGT
CAAATGTGATCCAAGAAGCACTCACCGCTGGCGTTCAGCCGCTCGTTGTG
AAATTTGCTATGCATCCGTTCAACAAAGATGTCGCCTTTTTCGCACTTCA
CAAAAGCAGCGCCGTCTTCATCCTTTTCGGATTGCAAGAAAGAAAACTGA
AAGGCGTAGCGTTAGCATCTTCGTTCGGTAGAGAACGCTTTGTCTCTGGA
TTGTCAACAAGTACGAAAGGATTGATTTACGTTTCTCTGCGAGATGAAGC
TTGCATCATGCATGCGCCCCTCAGTTCAAGTAGTGAGACTGCATGTGGAC
TGCTGACATTTACAGTGCAGAAGCATTTGAAAGCCGCAGCTGAGAGTAAT
TGTTGTACGCTTGCCGAGCACGAAGAGAAGGACTTGCTACGCTTCAACTG
GCTGGCGAGACAGCGGAAGAAGGACATGGTCCACAACTGGAAAGGGAAAA
AGAGACGTCACGTTGATATCTGA

protein sequence of Gcaud7741.t1

>Gcaud7741.t1 ID=Gcaud7741.t1|Name=Gcaud7741.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=491bp
MKMWYEGWDPSDGSSEVGPVAHLKPANRLQILVFSIVLPGAEASHHHIMA
CAKVEQIEFYLKVANISVAAKRVNRPIWAYRRLARRRLVLKANVQISLWR
AVEIPVWKLGMTTAHVNSGSSPPPPLTQLLTVLQTEPVFTRDRCLYVGSE
RLEPQNVLAATVATLSQDRQLLAVATLQKQVTVFERIDRDWQSRCTHTLP
KRITAVVIDNAATHVVVSDAVGDVYRLPFDQSLNLREDHIQNDFLLLGHF
STITDISLTTALIATADRDNKIRVSRYPLSYVIEAFCLSHTQFVTTLQWT
LVPNLLLSAAGDCTVRLWDGPKGQHLDCLRLSESNVIQEALTAGVQPLVV
KFAMHPFNKDVAFFALHKSSAVFILFGLQERKLKGVALASSFGRERFVSG
LSTSTKGLIYVSLRDEACIMHAPLSSSSETACGLLTFTVQKHLKAAAESN
CCTLAEHEEKDLLRFNWLARQRKKDMVHNWKGKKRRHVDI*

mRNA from alignment at NODE_1881_length_7908_cov_4.074965:3488..5283+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7741.t1 ID=Gcaud7741.t1|Name=Gcaud7741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1796bp|location=Sequence derived from alignment at NODE_1881_length_7908_cov_4.074965:3488..5283+ (Gracilaria caudata M_176_S67 male)
ATGAAGATGTGGTACGAGGGATGGGACCCATCCGATGGGTCTTCTGAAGT
TGGGCCAGTAGCCCATCTAAAACCTGCAAATCGTTTGCAGATCCTCGTGT
TTTCCATTGGTGAGTCCGATTTGCCGCCCGATGAGAGCTCAAACTCATCT
ATTTGTTGGAGCGTTTAGAGCACGCCCCTCATGGGTAAACCGGGGGTTGT
TGGAATAGTAAGTTGTTTCTGTCCAACCATCATGGCTCCAGTTCTTCCAG
GAGCAGAAGCCAGTCATCACCACATCATGGCATGCGCGAAAGTTGAGCAA
ATAGAATTCTATTTAAAAGTGGCAAATATTTCGGTAGCAGCCAAAAGGGT
TAACAGACCTATCTGGGCTTACAGAAGGCTTGCTCGTCGTCGCCTGGTAT
TGAAAGCAAACGTCCAAATTTCACTATGGCGGGCTGTGGAGATCCCTGTT
TGGAAGCTCGGCATGACGACCGCCCATGTCAACAGTGGCTCCAGTCCGCC
TCCGCCGTTGACTCAACTTCTGACGGTGCTTCAGACAGAGCCCGTTTTCA
CGCGAGATCGTTGCTTGTACGTTGGAAGCGAGCGACTAGAGCCCCAAAAT
GTTCTTGCTGCCACCGTAGCAACGCTATCACAAGATCGGCAGCTTCTTGC
AGTGGCAACGCTTCAGAAGCAAGTCACAGTATTCGAGAGAATAGATCGAG
ACTGGCAGTCTCGTTGTACGCAGTAAGTTTTGGTTCATCTGCTTTTCCTG
CGCCATACAGCCAGTGATGATCTCCTTTGTCATGAATAGAGTCTCCGACT
TTTCCGGACCTCAAGTCCGTCGCTGCGGATATCAAAAGACTTTCTGAAGC
TGATCTATATCCAAACTCAAGTTTCATTTTGTCTCGCTAACCGACCAATG
TTATCAAACGCAGTACTCTTCCTAAGCGAATTACCGCTGTTGTCATTGAC
AATGCTGCTACGCACGTCGTTGTTTCCGATGCCGTTGGCGATGTATATCG
ATTACCGTTTGATCAATCCTTGAATTTAAGGGAGGATCACATTCAAAATG
ATTTTCTCTTGCTGGGACACTTTTCTACAATAACTGACATATCACTCACA
ACCGCTCTCATTGCAACTGCCGACCGCGACAACAAGATACGGGTGTCGCG
CTATCCGCTTTCGTATGTGATCGAGGCGTTCTGTCTATCACACACCCAGT
TTGTCACAACTCTACAGTGGACTCTAGTGCCGAATCTTTTGCTTTCTGCT
GCTGGCGATTGTACTGTACGGCTCTGGGACGGTCCAAAGGGACAGCATTT
AGATTGCTTGCGGTTGTCTGAGTCAAATGTGATCCAAGAAGCACTCACCG
CTGGCGTTCAGCCGCTCGTTGTGAAATTTGCTATGCATCCGTTCAACAAA
GATGTCGCCTTTTTCGCACTTCACAAAAGCAGCGCCGTCTTCATCCTTTT
CGGATTGCAAGAAAGAAAACTGAAAGGCGTAGCGTTAGCATCTTCGTTCG
GTAGAGAACGCTTTGTCTCTGGATTGTCAACAAGTACGAAAGGATTGATT
TACGTTTCTCTGCGAGATGAAGCTTGCATCATGCATGCGCCCCTCAGTTC
AAGTAGTGAGACTGCATGTGGACTGCTGACATTTACAGTGCAGAAGCATT
TGAAAGCCGCAGCTGAGAGTAATTGTTGTACGCTTGCCGAGCACGAAGAG
AAGGACTTGCTACGCTTCAACTGGCTGGCGAGACAGCGGAAGAAGGACAT
GGTCCACAACTGGAAAGGGAAAAAGAGACGTCACGTTGATATCTGA

Coding sequence (CDS) from alignment at NODE_1881_length_7908_cov_4.074965:3488..5283+

>Gcaud7741.t1 ID=Gcaud7741.t1|Name=Gcaud7741.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1473bp|location=Sequence derived from alignment at NODE_1881_length_7908_cov_4.074965:3488..5283+ (Gracilaria caudata M_176_S67 male)
ATGAAGATGTGGTACGAGGGATGGGACCCATCCGATGGGTCTTCTGAAGT
TGGGCCAGTAGCCCATCTAAAACCTGCAAATCGTTTGCAGATCCTCGTGT
TTTCCATTGTTCTTCCAGGAGCAGAAGCCAGTCATCACCACATCATGGCA
TGCGCGAAAGTTGAGCAAATAGAATTCTATTTAAAAGTGGCAAATATTTC
GGTAGCAGCCAAAAGGGTTAACAGACCTATCTGGGCTTACAGAAGGCTTG
CTCGTCGTCGCCTGGTATTGAAAGCAAACGTCCAAATTTCACTATGGCGG
GCTGTGGAGATCCCTGTTTGGAAGCTCGGCATGACGACCGCCCATGTCAA
CAGTGGCTCCAGTCCGCCTCCGCCGTTGACTCAACTTCTGACGGTGCTTC
AGACAGAGCCCGTTTTCACGCGAGATCGTTGCTTGTACGTTGGAAGCGAG
CGACTAGAGCCCCAAAATGTTCTTGCTGCCACCGTAGCAACGCTATCACA
AGATCGGCAGCTTCTTGCAGTGGCAACGCTTCAGAAGCAAGTCACAGTAT
TCGAGAGAATAGATCGAGACTGGCAGTCTCGTTGTACGCATACTCTTCCT
AAGCGAATTACCGCTGTTGTCATTGACAATGCTGCTACGCACGTCGTTGT
TTCCGATGCCGTTGGCGATGTATATCGATTACCGTTTGATCAATCCTTGA
ATTTAAGGGAGGATCACATTCAAAATGATTTTCTCTTGCTGGGACACTTT
TCTACAATAACTGACATATCACTCACAACCGCTCTCATTGCAACTGCCGA
CCGCGACAACAAGATACGGGTGTCGCGCTATCCGCTTTCGTATGTGATCG
AGGCGTTCTGTCTATCACACACCCAGTTTGTCACAACTCTACAGTGGACT
CTAGTGCCGAATCTTTTGCTTTCTGCTGCTGGCGATTGTACTGTACGGCT
CTGGGACGGTCCAAAGGGACAGCATTTAGATTGCTTGCGGTTGTCTGAGT
CAAATGTGATCCAAGAAGCACTCACCGCTGGCGTTCAGCCGCTCGTTGTG
AAATTTGCTATGCATCCGTTCAACAAAGATGTCGCCTTTTTCGCACTTCA
CAAAAGCAGCGCCGTCTTCATCCTTTTCGGATTGCAAGAAAGAAAACTGA
AAGGCGTAGCGTTAGCATCTTCGTTCGGTAGAGAACGCTTTGTCTCTGGA
TTGTCAACAAGTACGAAAGGATTGATTTACGTTTCTCTGCGAGATGAAGC
TTGCATCATGCATGCGCCCCTCAGTTCAAGTAGTGAGACTGCATGTGGAC
TGCTGACATTTACAGTGCAGAAGCATTTGAAAGCCGCAGCTGAGAGTAAT
TGTTGTACGCTTGCCGAGCACGAAGAGAAGGACTTGCTACGCTTCAACTG
GCTGGCGAGACAGCGGAAGAAGGACATGGTCCACAACTGGAAAGGGAAAA
AGAGACGTCACGTTGATATCTGA