Gcaud7733.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7733.t1
Unique Name	Gcaud7733.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	505

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2950_length_4349_cov_4.451386	contig	NODE_2950_length_4349_cov_4.451386:101..1615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	998674.ATTE01000001_gene3401
PFAMs	CotH,LTD
Max annot lvl	1236\|Gammaproteobacteria
Evalue	9.06e-11
EggNOG OGs	COG5337@1\|root,COG5337@2\|Bacteria,1QCJ4@1224\|Proteobacteria,1S91X@1236\|Gammaproteobacteria
Description	CotH kinase protein
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7733	Gcaud7733	Gracilaria caudata M_176_S67 male	gene	NODE_2950_length_4349_cov_4.451386 101..1615 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7733.t1.start1	Gcaud7733.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2950_length_4349_cov_4.451386 101..103 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7733.t1.CDS1	Gcaud7733.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2950_length_4349_cov_4.451386 101..1615 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7733.t1.exon1	Gcaud7733.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2950_length_4349_cov_4.451386 101..1615 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7733.t1.stop1	Gcaud7733.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2950_length_4349_cov_4.451386 1613..1615 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7733.t1	Gcaud7733.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2950_length_4349_cov_4.451386 101..1615 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2950_length_4349_cov_4.451386:101..1615+
coding sequence from alignment at NODE_2950_length_4349_cov_4.451386:101..1615+

mRNA sequence

>Gcaud7733.t1 ID=Gcaud7733.t1|Name=Gcaud7733.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=505bp
MVTSTSDSPVFYQQPDKPDMSGAEIFDTSSRNVFNRDNHEIYIRIHQLVF
QKVLDDGAQQIDSGYGLVDEFILDGNAIPNVGIKVRGNTSAANVKRQFKF
KFDAEEVFAWRDGSIKQIEFPENDDRRFFGEQGFSVRCSQNDPTRIREML
SGKIFRETALGEEDAQRPWRTKGGLVYRAAFATLFVTNGRTVEEGYDSGY
PEYRVPYQGRLYDPKGLYVITENIDKTFLQTRFERYAGEKLKGYLFQADK
GQAYFRKEKYSRVGWKCELVKGKKAKDEDDFQKGDEKMMFLIDFLASSPS
EEEIRNVFDMDSVNAYVAGALLATHWDSLAANRNNDFLFYLKRDSLDADL
KPVLDADGEEVKERKWYMITWDLDNTLWDKPGSNNEVMNPYKSWFSNYIY
QPARKDDKKTRLIDEVFDNEDNKEIRSAYRNVLRSMLKGFYETKEYEDEV
DELMGRSSDAIDETRRAVENAGWMNSWGESNNPNDFEDIKHHASVRRSKV
GSQL*

spliced messenger RNA

>Gcaud7733.t1 ID=Gcaud7733.t1|Name=Gcaud7733.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at NODE_2950_length_4349_cov_4.451386:101..1615+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACCTCCACGTCCGACTCGCCCGTGTTCTACCAGCAGCCCGACAA
GCCGGACATGAGCGGCGCCGAGATCTTCGACACCTCCTCGCGCAACGTGT
TCAACCGCGACAACCACGAGATCTACATCCGCATCCACCAGCTCGTGTTC
CAAAAGGTGCTCGACGACGGCGCCCAACAAATCGACTCCGGCTACGGCCT
CGTGGACGAGTTCATCCTGGACGGAAACGCCATCCCCAACGTCGGCATCA
AGGTACGTGGCAACACCTCCGCCGCCAACGTCAAACGTCAGTTCAAGTTC
AAGTTCGACGCGGAGGAGGTGTTTGCGTGGCGCGACGGCTCCATTAAGCA
GATCGAGTTTCCCGAGAACGATGACCGTCGCTTCTTTGGCGAGCAGGGCT
TCTCGGTGCGCTGCTCGCAGAACGATCCCACGCGCATTCGTGAGATGCTT
TCGGGAAAGATCTTCCGCGAGACGGCGTTGGGAGAGGAGGATGCGCAACG
ACCGTGGCGAACGAAGGGTGGATTGGTGTACCGTGCCGCGTTTGCCACGC
TGTTTGTGACCAACGGACGTACCGTGGAGGAGGGTTACGACTCGGGTTAC
CCCGAGTATCGCGTGCCGTACCAGGGCAGGTTGTACGACCCGAAGGGCTT
GTACGTGATCACGGAGAACATCGATAAGACGTTCTTGCAGACGAGGTTTG
AGCGGTACGCCGGTGAAAAGCTGAAGGGGTACCTGTTCCAGGCGGACAAG
GGACAGGCTTACTTCCGGAAGGAAAAGTATAGCCGTGTTGGGTGGAAGTG
TGAGCTGGTGAAGGGGAAGAAGGCGAAGGATGAGGACGACTTCCAGAAGG
GCGATGAGAAGATGATGTTTCTGATTGACTTTCTGGCCAGCTCGCCGAGT
GAGGAGGAGATTCGGAACGTATTTGATATGGACAGCGTGAATGCGTACGT
GGCCGGCGCTTTGCTGGCCACGCATTGGGACAGTCTTGCGGCCAATCGTA
ACAACGACTTTCTGTTCTACCTGAAGAGAGACTCGTTGGATGCGGACTTG
AAACCGGTGTTGGATGCGGATGGGGAGGAAGTGAAGGAGAGGAAGTGGTA
CATGATCACGTGGGACTTGGACAATACTTTGTGGGACAAGCCCGGTTCGA
ACAACGAGGTGATGAACCCGTATAAGAGCTGGTTCTCCAACTACATCTAC
CAGCCCGCACGCAAGGACGACAAGAAAACGAGGCTGATTGATGAGGTGTT
TGACAACGAGGACAACAAGGAGATACGCAGTGCGTACCGCAACGTGTTGC
GTAGCATGTTGAAGGGCTTCTACGAGACGAAAGAGTATGAAGACGAAGTG
GATGAGCTTATGGGACGCTCATCGGACGCGATCGACGAAACCAGACGCGC
GGTTGAGAATGCGGGGTGGATGAATTCGTGGGGAGAGAGTAACAACCCCA
ACGACTTTGAGGATATCAAGCATCACGCCAGCGTGAGAAGGAGCAAGGTG
GGAAGCCAGCTGTGA

protein sequence of Gcaud7733.t1

>Gcaud7733.t1 ID=Gcaud7733.t1|Name=Gcaud7733.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=505bp
MVTSTSDSPVFYQQPDKPDMSGAEIFDTSSRNVFNRDNHEIYIRIHQLVF
QKVLDDGAQQIDSGYGLVDEFILDGNAIPNVGIKVRGNTSAANVKRQFKF
KFDAEEVFAWRDGSIKQIEFPENDDRRFFGEQGFSVRCSQNDPTRIREML
SGKIFRETALGEEDAQRPWRTKGGLVYRAAFATLFVTNGRTVEEGYDSGY
PEYRVPYQGRLYDPKGLYVITENIDKTFLQTRFERYAGEKLKGYLFQADK
GQAYFRKEKYSRVGWKCELVKGKKAKDEDDFQKGDEKMMFLIDFLASSPS
EEEIRNVFDMDSVNAYVAGALLATHWDSLAANRNNDFLFYLKRDSLDADL
KPVLDADGEEVKERKWYMITWDLDNTLWDKPGSNNEVMNPYKSWFSNYIY
QPARKDDKKTRLIDEVFDNEDNKEIRSAYRNVLRSMLKGFYETKEYEDEV
DELMGRSSDAIDETRRAVENAGWMNSWGESNNPNDFEDIKHHASVRRSKV
GSQL*

mRNA from alignment at NODE_2950_length_4349_cov_4.451386:101..1615+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7733.t1 ID=Gcaud7733.t1|Name=Gcaud7733.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at NODE_2950_length_4349_cov_4.451386:101..1615+ (Gracilaria caudata M_176_S67 male)
ATGGTGACCTCCACGTCCGACTCGCCCGTGTTCTACCAGCAGCCCGACAA
GCCGGACATGAGCGGCGCCGAGATCTTCGACACCTCCTCGCGCAACGTGT
TCAACCGCGACAACCACGAGATCTACATCCGCATCCACCAGCTCGTGTTC
CAAAAGGTGCTCGACGACGGCGCCCAACAAATCGACTCCGGCTACGGCCT
CGTGGACGAGTTCATCCTGGACGGAAACGCCATCCCCAACGTCGGCATCA
AGGTACGTGGCAACACCTCCGCCGCCAACGTCAAACGTCAGTTCAAGTTC
AAGTTCGACGCGGAGGAGGTGTTTGCGTGGCGCGACGGCTCCATTAAGCA
GATCGAGTTTCCCGAGAACGATGACCGTCGCTTCTTTGGCGAGCAGGGCT
TCTCGGTGCGCTGCTCGCAGAACGATCCCACGCGCATTCGTGAGATGCTT
TCGGGAAAGATCTTCCGCGAGACGGCGTTGGGAGAGGAGGATGCGCAACG
ACCGTGGCGAACGAAGGGTGGATTGGTGTACCGTGCCGCGTTTGCCACGC
TGTTTGTGACCAACGGACGTACCGTGGAGGAGGGTTACGACTCGGGTTAC
CCCGAGTATCGCGTGCCGTACCAGGGCAGGTTGTACGACCCGAAGGGCTT
GTACGTGATCACGGAGAACATCGATAAGACGTTCTTGCAGACGAGGTTTG
AGCGGTACGCCGGTGAAAAGCTGAAGGGGTACCTGTTCCAGGCGGACAAG
GGACAGGCTTACTTCCGGAAGGAAAAGTATAGCCGTGTTGGGTGGAAGTG
TGAGCTGGTGAAGGGGAAGAAGGCGAAGGATGAGGACGACTTCCAGAAGG
GCGATGAGAAGATGATGTTTCTGATTGACTTTCTGGCCAGCTCGCCGAGT
GAGGAGGAGATTCGGAACGTATTTGATATGGACAGCGTGAATGCGTACGT
GGCCGGCGCTTTGCTGGCCACGCATTGGGACAGTCTTGCGGCCAATCGTA
ACAACGACTTTCTGTTCTACCTGAAGAGAGACTCGTTGGATGCGGACTTG
AAACCGGTGTTGGATGCGGATGGGGAGGAAGTGAAGGAGAGGAAGTGGTA
CATGATCACGTGGGACTTGGACAATACTTTGTGGGACAAGCCCGGTTCGA
ACAACGAGGTGATGAACCCGTATAAGAGCTGGTTCTCCAACTACATCTAC
CAGCCCGCACGCAAGGACGACAAGAAAACGAGGCTGATTGATGAGGTGTT
TGACAACGAGGACAACAAGGAGATACGCAGTGCGTACCGCAACGTGTTGC
GTAGCATGTTGAAGGGCTTCTACGAGACGAAAGAGTATGAAGACGAAGTG
GATGAGCTTATGGGACGCTCATCGGACGCGATCGACGAAACCAGACGCGC
GGTTGAGAATGCGGGGTGGATGAATTCGTGGGGAGAGAGTAACAACCCCA
ACGACTTTGAGGATATCAAGCATCACGCCAGCGTGAGAAGGAGCAAGGTG
GGAAGCCAGCTGTGA

Coding sequence (CDS) from alignment at NODE_2950_length_4349_cov_4.451386:101..1615+

>Gcaud7733.t1 ID=Gcaud7733.t1|Name=Gcaud7733.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1515bp|location=Sequence derived from alignment at NODE_2950_length_4349_cov_4.451386:101..1615+ (Gracilaria caudata M_176_S67 male)
ATGGTGACCTCCACGTCCGACTCGCCCGTGTTCTACCAGCAGCCCGACAA
GCCGGACATGAGCGGCGCCGAGATCTTCGACACCTCCTCGCGCAACGTGT
TCAACCGCGACAACCACGAGATCTACATCCGCATCCACCAGCTCGTGTTC
CAAAAGGTGCTCGACGACGGCGCCCAACAAATCGACTCCGGCTACGGCCT
CGTGGACGAGTTCATCCTGGACGGAAACGCCATCCCCAACGTCGGCATCA
AGGTACGTGGCAACACCTCCGCCGCCAACGTCAAACGTCAGTTCAAGTTC
AAGTTCGACGCGGAGGAGGTGTTTGCGTGGCGCGACGGCTCCATTAAGCA
GATCGAGTTTCCCGAGAACGATGACCGTCGCTTCTTTGGCGAGCAGGGCT
TCTCGGTGCGCTGCTCGCAGAACGATCCCACGCGCATTCGTGAGATGCTT
TCGGGAAAGATCTTCCGCGAGACGGCGTTGGGAGAGGAGGATGCGCAACG
ACCGTGGCGAACGAAGGGTGGATTGGTGTACCGTGCCGCGTTTGCCACGC
TGTTTGTGACCAACGGACGTACCGTGGAGGAGGGTTACGACTCGGGTTAC
CCCGAGTATCGCGTGCCGTACCAGGGCAGGTTGTACGACCCGAAGGGCTT
GTACGTGATCACGGAGAACATCGATAAGACGTTCTTGCAGACGAGGTTTG
AGCGGTACGCCGGTGAAAAGCTGAAGGGGTACCTGTTCCAGGCGGACAAG
GGACAGGCTTACTTCCGGAAGGAAAAGTATAGCCGTGTTGGGTGGAAGTG
TGAGCTGGTGAAGGGGAAGAAGGCGAAGGATGAGGACGACTTCCAGAAGG
GCGATGAGAAGATGATGTTTCTGATTGACTTTCTGGCCAGCTCGCCGAGT
GAGGAGGAGATTCGGAACGTATTTGATATGGACAGCGTGAATGCGTACGT
GGCCGGCGCTTTGCTGGCCACGCATTGGGACAGTCTTGCGGCCAATCGTA
ACAACGACTTTCTGTTCTACCTGAAGAGAGACTCGTTGGATGCGGACTTG
AAACCGGTGTTGGATGCGGATGGGGAGGAAGTGAAGGAGAGGAAGTGGTA
CATGATCACGTGGGACTTGGACAATACTTTGTGGGACAAGCCCGGTTCGA
ACAACGAGGTGATGAACCCGTATAAGAGCTGGTTCTCCAACTACATCTAC
CAGCCCGCACGCAAGGACGACAAGAAAACGAGGCTGATTGATGAGGTGTT
TGACAACGAGGACAACAAGGAGATACGCAGTGCGTACCGCAACGTGTTGC
GTAGCATGTTGAAGGGCTTCTACGAGACGAAAGAGTATGAAGACGAAGTG
GATGAGCTTATGGGACGCTCATCGGACGCGATCGACGAAACCAGACGCGC
GGTTGAGAATGCGGGGTGGATGAATTCGTGGGGAGAGAGTAACAACCCCA
ACGACTTTGAGGATATCAAGCATCACGCCAGCGTGAGAAGGAGCAAGGTG
GGAAGCCAGCTGTGA