Gcaud7719.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7719.t2
Unique Name	Gcaud7719.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1416_length_10833_cov_3.444331	contig	NODE_1416_length_10833_cov_3.444331:3477..4652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5970.XP_009157148.1
PFAMs	NTP_transf_2,PAP_assoc
Max annot lvl	4751\|Fungi
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0004652,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016073,GO:0016074,GO:0016180,GO:0016740,GO:0016772,GO:0016779,GO:0031123,GO:0031124,GO:0031126,GO:0034470,GO:0034641,GO:0034660,GO:0043144,GO:0043170,GO:0043628,GO:0043629,GO:0043631,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070566,GO:0071050,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Evalue	8.65e-24
EggNOG OGs	COG5260@1\|root,KOG2277@2759\|Eukaryota,38EW5@33154\|Opisthokonta,3NXI7@4751\|Fungi,3QPXA@4890\|Ascomycota,20E9X@147545\|Eurotiomycetes,3MQ9I@451870\|Chaetothyriomycetidae
Description	Cid1 family poly A polymerase
COG category	D

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7719	Gcaud7719	Gracilaria caudata M_176_S67 male	gene	NODE_1416_length_10833_cov_3.444331 2745..4652 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7719.t2.start1	Gcaud7719.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1416_length_10833_cov_3.444331 3477..3479 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7719.t2.CDS1	Gcaud7719.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1416_length_10833_cov_3.444331 3477..4652 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7719.t2.exon1	Gcaud7719.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1416_length_10833_cov_3.444331 3477..4652 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7719.t2.stop1	Gcaud7719.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1416_length_10833_cov_3.444331 4650..4652 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7719.t2	Gcaud7719.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1416_length_10833_cov_3.444331 3477..4652 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1416_length_10833_cov_3.444331:3477..4652+
coding sequence from alignment at NODE_1416_length_10833_cov_3.444331:3477..4652+

mRNA sequence

>Gcaud7719.t2 ID=Gcaud7719.t2|Name=Gcaud7719.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=392bp
MATTSAHCRFGSADNITEGGPIYVKARNRAARLARSKVEHIKAEIETACL
KELRIYVQRLLMSWRATDLKRYCYRAFHNAKEMILREGKGNLYGASVSLY
GSLTTGLVLGESDIDVSVKVPALFRSNRDEDAHLMKAKTVEVLKYLASHL
RKERMENVFVVTQARVPVLRYMDRETQVHVDVTLNNDRSLLLSRLLRRHV
QKDARIWELCMLVKYWAKQRRLCGVPQGHINSMGWVIMVIFFTQHLAHPR
IGGLFRPKRTCGNFSTIVEEPWRYSSARDGVNDSATHVLLMQFFRAFGCE
FDFAREAISISLQRRESTQHVSLVGCDKALFIEQPLLRGKNVVDYVSRYS
LQIVRDEMKAAYYMLKSGSEHVRELFRVRQSRPVDELFARR*

spliced messenger RNA

>Gcaud7719.t2 ID=Gcaud7719.t2|Name=Gcaud7719.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at NODE_1416_length_10833_cov_3.444331:3477..4652+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACAACAAGTGCCCACTGTCGATTCGGCAGTGCTGATAATATCAC
CGAAGGGGGACCAATATATGTGAAGGCGCGAAACAGGGCTGCGAGGCTTG
CTAGATCGAAGGTTGAGCATATTAAAGCTGAAATAGAAACAGCGTGTCTT
AAAGAGCTCAGAATATACGTGCAAAGGCTTCTGATGAGTTGGAGAGCGAC
CGATTTGAAAAGATACTGCTACAGGGCATTCCACAACGCGAAGGAAATGA
TTTTACGGGAGGGAAAGGGAAACCTATACGGCGCGTCTGTTTCTCTGTAT
GGCTCGTTGACAACTGGGTTGGTGCTGGGCGAATCAGATATCGACGTGTC
AGTGAAGGTTCCAGCGCTATTCCGCTCGAACCGCGACGAGGACGCGCACC
TGATGAAGGCAAAAACGGTGGAAGTGCTCAAATATCTGGCCAGCCACTTA
CGCAAGGAGAGGATGGAAAATGTATTCGTGGTGACGCAGGCACGCGTGCC
GGTGCTGCGCTACATGGACAGAGAAACTCAGGTGCACGTGGACGTGACGC
TAAACAACGACCGCAGTTTATTGCTGTCGAGACTGCTACGGAGACACGTG
CAAAAAGACGCGCGCATCTGGGAGCTGTGCATGCTGGTCAAGTACTGGGC
AAAGCAACGCCGGCTGTGCGGCGTGCCGCAGGGCCACATCAACTCCATGG
GCTGGGTGATCATGGTGATCTTTTTCACTCAGCACCTGGCGCACCCGCGC
ATCGGCGGGCTGTTCCGCCCCAAGCGCACGTGCGGCAACTTCTCCACCAT
TGTGGAGGAGCCGTGGCGCTACAGCAGCGCGCGCGACGGCGTCAATGACA
GCGCCACGCACGTGCTGCTGATGCAGTTCTTCCGCGCGTTCGGCTGCGAG
TTTGACTTCGCGCGCGAGGCCATCTCCATCAGCCTGCAGCGCCGCGAGAG
CACGCAACACGTGTCGTTGGTGGGCTGCGACAAGGCGCTGTTCATCGAGC
AGCCGCTGCTGCGCGGAAAGAACGTCGTGGACTACGTGTCACGCTACTCG
CTACAGATCGTGCGCGACGAAATGAAGGCTGCGTATTACATGCTCAAGTC
CGGCTCCGAACACGTGCGCGAGCTGTTCCGCGTGCGCCAATCACGTCCCG
TGGACGAGCTGTTTGCACGCCGCTAA

protein sequence of Gcaud7719.t2

>Gcaud7719.t2 ID=Gcaud7719.t2|Name=Gcaud7719.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=392bp
MATTSAHCRFGSADNITEGGPIYVKARNRAARLARSKVEHIKAEIETACL
KELRIYVQRLLMSWRATDLKRYCYRAFHNAKEMILREGKGNLYGASVSLY
GSLTTGLVLGESDIDVSVKVPALFRSNRDEDAHLMKAKTVEVLKYLASHL
RKERMENVFVVTQARVPVLRYMDRETQVHVDVTLNNDRSLLLSRLLRRHV
QKDARIWELCMLVKYWAKQRRLCGVPQGHINSMGWVIMVIFFTQHLAHPR
IGGLFRPKRTCGNFSTIVEEPWRYSSARDGVNDSATHVLLMQFFRAFGCE
FDFAREAISISLQRRESTQHVSLVGCDKALFIEQPLLRGKNVVDYVSRYS
LQIVRDEMKAAYYMLKSGSEHVRELFRVRQSRPVDELFARR*

mRNA from alignment at NODE_1416_length_10833_cov_3.444331:3477..4652+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7719.t2 ID=Gcaud7719.t2|Name=Gcaud7719.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at NODE_1416_length_10833_cov_3.444331:3477..4652+ (Gracilaria caudata M_176_S67 male)
ATGGCAACAACAAGTGCCCACTGTCGATTCGGCAGTGCTGATAATATCAC
CGAAGGGGGACCAATATATGTGAAGGCGCGAAACAGGGCTGCGAGGCTTG
CTAGATCGAAGGTTGAGCATATTAAAGCTGAAATAGAAACAGCGTGTCTT
AAAGAGCTCAGAATATACGTGCAAAGGCTTCTGATGAGTTGGAGAGCGAC
CGATTTGAAAAGATACTGCTACAGGGCATTCCACAACGCGAAGGAAATGA
TTTTACGGGAGGGAAAGGGAAACCTATACGGCGCGTCTGTTTCTCTGTAT
GGCTCGTTGACAACTGGGTTGGTGCTGGGCGAATCAGATATCGACGTGTC
AGTGAAGGTTCCAGCGCTATTCCGCTCGAACCGCGACGAGGACGCGCACC
TGATGAAGGCAAAAACGGTGGAAGTGCTCAAATATCTGGCCAGCCACTTA
CGCAAGGAGAGGATGGAAAATGTATTCGTGGTGACGCAGGCACGCGTGCC
GGTGCTGCGCTACATGGACAGAGAAACTCAGGTGCACGTGGACGTGACGC
TAAACAACGACCGCAGTTTATTGCTGTCGAGACTGCTACGGAGACACGTG
CAAAAAGACGCGCGCATCTGGGAGCTGTGCATGCTGGTCAAGTACTGGGC
AAAGCAACGCCGGCTGTGCGGCGTGCCGCAGGGCCACATCAACTCCATGG
GCTGGGTGATCATGGTGATCTTTTTCACTCAGCACCTGGCGCACCCGCGC
ATCGGCGGGCTGTTCCGCCCCAAGCGCACGTGCGGCAACTTCTCCACCAT
TGTGGAGGAGCCGTGGCGCTACAGCAGCGCGCGCGACGGCGTCAATGACA
GCGCCACGCACGTGCTGCTGATGCAGTTCTTCCGCGCGTTCGGCTGCGAG
TTTGACTTCGCGCGCGAGGCCATCTCCATCAGCCTGCAGCGCCGCGAGAG
CACGCAACACGTGTCGTTGGTGGGCTGCGACAAGGCGCTGTTCATCGAGC
AGCCGCTGCTGCGCGGAAAGAACGTCGTGGACTACGTGTCACGCTACTCG
CTACAGATCGTGCGCGACGAAATGAAGGCTGCGTATTACATGCTCAAGTC
CGGCTCCGAACACGTGCGCGAGCTGTTCCGCGTGCGCCAATCACGTCCCG
TGGACGAGCTGTTTGCACGCCGCTAA

Coding sequence (CDS) from alignment at NODE_1416_length_10833_cov_3.444331:3477..4652+

>Gcaud7719.t2 ID=Gcaud7719.t2|Name=Gcaud7719.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1176bp|location=Sequence derived from alignment at NODE_1416_length_10833_cov_3.444331:3477..4652+ (Gracilaria caudata M_176_S67 male)
ATGGCAACAACAAGTGCCCACTGTCGATTCGGCAGTGCTGATAATATCAC
CGAAGGGGGACCAATATATGTGAAGGCGCGAAACAGGGCTGCGAGGCTTG
CTAGATCGAAGGTTGAGCATATTAAAGCTGAAATAGAAACAGCGTGTCTT
AAAGAGCTCAGAATATACGTGCAAAGGCTTCTGATGAGTTGGAGAGCGAC
CGATTTGAAAAGATACTGCTACAGGGCATTCCACAACGCGAAGGAAATGA
TTTTACGGGAGGGAAAGGGAAACCTATACGGCGCGTCTGTTTCTCTGTAT
GGCTCGTTGACAACTGGGTTGGTGCTGGGCGAATCAGATATCGACGTGTC
AGTGAAGGTTCCAGCGCTATTCCGCTCGAACCGCGACGAGGACGCGCACC
TGATGAAGGCAAAAACGGTGGAAGTGCTCAAATATCTGGCCAGCCACTTA
CGCAAGGAGAGGATGGAAAATGTATTCGTGGTGACGCAGGCACGCGTGCC
GGTGCTGCGCTACATGGACAGAGAAACTCAGGTGCACGTGGACGTGACGC
TAAACAACGACCGCAGTTTATTGCTGTCGAGACTGCTACGGAGACACGTG
CAAAAAGACGCGCGCATCTGGGAGCTGTGCATGCTGGTCAAGTACTGGGC
AAAGCAACGCCGGCTGTGCGGCGTGCCGCAGGGCCACATCAACTCCATGG
GCTGGGTGATCATGGTGATCTTTTTCACTCAGCACCTGGCGCACCCGCGC
ATCGGCGGGCTGTTCCGCCCCAAGCGCACGTGCGGCAACTTCTCCACCAT
TGTGGAGGAGCCGTGGCGCTACAGCAGCGCGCGCGACGGCGTCAATGACA
GCGCCACGCACGTGCTGCTGATGCAGTTCTTCCGCGCGTTCGGCTGCGAG
TTTGACTTCGCGCGCGAGGCCATCTCCATCAGCCTGCAGCGCCGCGAGAG
CACGCAACACGTGTCGTTGGTGGGCTGCGACAAGGCGCTGTTCATCGAGC
AGCCGCTGCTGCGCGGAAAGAACGTCGTGGACTACGTGTCACGCTACTCG
CTACAGATCGTGCGCGACGAAATGAAGGCTGCGTATTACATGCTCAAGTC
CGGCTCCGAACACGTGCGCGAGCTGTTCCGCGTGCGCCAATCACGTCCCG
TGGACGAGCTGTTTGCACGCCGCTAA