Gcaud7708.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7708.t1
Unique Name	Gcaud7708.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	502

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3613_length_3179_cov_4.559909	contig	NODE_3613_length_3179_cov_4.559909:2..1507 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709381.1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04512,ko:K05747
KEGG Pathway	ko04062,ko04144,ko04310,ko04520,ko04530,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,ko05231,map04062,map04144,map04310,map04520,map04530,map04666,map04810,map05100,map05130,map05131,map05132,map05231
Evalue	1.9e-111
EggNOG OGs	2EUZ9@1\|root,2SX1S@2759\|Eukaryota
BRITE	ko00000,ko00001,ko04131,ko04147,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7708	Gcaud7708	Gracilaria caudata M_176_S67 male	gene	NODE_3613_length_3179_cov_4.559909 2..1507 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7708.t1.CDS1	Gcaud7708.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3613_length_3179_cov_4.559909 2..1507 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7708.t1.exon1	Gcaud7708.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3613_length_3179_cov_4.559909 2..1507 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7708.t1.stop1	Gcaud7708.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3613_length_3179_cov_4.559909 1505..1507 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7708.t1	Gcaud7708.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3613_length_3179_cov_4.559909 2..1507 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3613_length_3179_cov_4.559909:2..1507+
coding sequence from alignment at NODE_3613_length_3179_cov_4.559909:2..1507+

mRNA sequence

>Gcaud7708.t1 ID=Gcaud7708.t1|Name=Gcaud7708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=502bp
GGPGGGGPGGGGPGGRGAGNAPGAAGAVAAAAAARKNQASNGPTPRAPGA
PAVPGAPGAPAVPKAPVGQVAGKDNSARGRQKKPLHWAKVPMNLVNNSFW
PSLDEGNVRLDEEEIDDLFGVDVVERFQIAAAEVKPEVLPHKRKHNVNIL
LANLKMSAEHIKDVVRVPTYKELEAGTLQALLLVCPTQEEEMLLVQNANI
RAEVDKTDAFMMDLADLKGLRGKILCALAAKTFNDEAVDVIRNMDTFAMI
PVEVMNSEKLGRILEAVLALGNFLNSGTGRGGAHGFKLEALAMLSTVKDA
KGNTLLDYLIFMLERDNPGLLPLDDMPTLARSKELSLEAIGEEVQALLES
VTNVSEQIKQIGDDQTLAAFKAEMEVFAEEATKVREEIVSLRGLMMQKLQ
SMMQHFGERNKMSRGRQEDILRMLRDFSDDIISGLARAKERNERARKQAA
KSDAKKMGNVGGAAPAIGNGVEPGAGEVANGLASANVAVEVGGGDDGGGE
Q*

spliced messenger RNA

>Gcaud7708.t1 ID=Gcaud7708.t1|Name=Gcaud7708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at NODE_3613_length_3179_cov_4.559909:2..1507+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ggcggacccggaggcggcgggcctggcggcggcggACCAGGTGGAAGAGG
CGCAGGGAATGCACCGGGTGCTGCGGGCGCAGTCGCCGCTGCCGCAGCCG
CGAGGAAGAATCAGGCGTCGAATGGACCTACGCCGCGAGCTCCAGGAGCG
CCGGCTGTTCCTGGAGCGCCGGGAGCGCCCGCTGTGCCGAAGGCTCCTGT
CGGACAGGTTGCCGGTAAGGATAACAGTGCGAGAGGACGTCAGAAGAAAC
CGCTTCATTGGGCAAAGGTCCCTATGAACTTGGTGAATAACTCCTTCTGG
CCATCTTTGGATGAGGGCAATGTGCGCCTGGATGAGGAGGAGATTGATGA
CCTGTTTGGCGTAGACGTTGTGGAGAGATTCCAGATCGCTGCCGCTGAGG
TTAAACCGGAAGTTCTCCCGCATAAGCGCAAGCATAATGTCAATATCTTG
TTGGCCAACTTGAAGATGAGTGCCGAGCACATTAAGGATGTCGTCAGAGT
TCCTACATACAAGGAGTTGGAGGCTGGTACTTTGCAGGCTTTGCTGCTTG
TATGTCCTACGCAGGAGGAGGAGATGTTGCTGGTACAAAACGCTAACATT
CGAGCTGAGGTTGATAAGACTGATGCGTTCATGATGGACTTGGCAGACTT
GAAGGGATTGCGTGGAAAGATTCTTTGCGCGTTGGCCGCCAAGACCTTTA
ACGATGAGGCTGTGGATGTCATCCGTAATATGGATACCTTTGCCATGATT
CCGGTCGAGGTCATGAACTCCGAAAAGCTTGGACGTATCCTGGAAGCTGT
GCTGGCGCTTGGTAACTTCCTCAACTCCGGTACTGGTCGTGGCGGTGCTC
ATGGCTTCAAGTTGGAAGCGTTGGCTATGTTGAGTACCGTGAAAGATGCC
AAGGGTAACACATTATTGGATTACCTTATCTTCATGTTGGAGAGGGACAA
CCCAGGGTTGTTGCCTTTGGATGACATGCCCACTCTGGCTAGATCAAAGG
AGCTTTCTCTGGAAGCGATTGGAGAGGAAGTTCAGGCTCTGTTGGAATCT
GTGACAAATGTGTCAGAGCAGATCAAGCAGATTGGTGACGATCAGACACT
CGCCGCATTCAAGGCTGAGATGGAGGTATTTGCTGAAGAGGCGACAAAGG
TTCGGGAAGAGATCGTATCCTTGAGAGGTCTAATGATGCAAAAGCTGCAG
AGCATGATGCAGCACTTTGGTGAGAGAAATAAGATGTCAAGAGGAAGGCA
GGAGGATATCTTGAGAATGTTGCGAGATTTCTCAGACGATATTATCTCCG
GGCTGGCGAGGGCCAAGGAGAGGAATGAACGCGCAAGAAAACAGGCGGCC
AAGAGCGATGCGAAGAAGATGGGCAATGTTGGGGGAGCGGCGCCTGCAAT
CGGAAACGGTGTAGAGCCTGGTGCAGGTGAGGTTGCCAATGGGTTGGCCA
GTGCGAACGTGGCTGTTGAGGTTGGCGGTGGAGACGATGGTGGCGGCGAG
CAGTGA

protein sequence of Gcaud7708.t1

>Gcaud7708.t1 ID=Gcaud7708.t1|Name=Gcaud7708.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=502bp
GGPGGGGPGGGGPGGRGAGNAPGAAGAVAAAAAARKNQASNGPTPRAPGA
PAVPGAPGAPAVPKAPVGQVAGKDNSARGRQKKPLHWAKVPMNLVNNSFW
PSLDEGNVRLDEEEIDDLFGVDVVERFQIAAAEVKPEVLPHKRKHNVNIL
LANLKMSAEHIKDVVRVPTYKELEAGTLQALLLVCPTQEEEMLLVQNANI
RAEVDKTDAFMMDLADLKGLRGKILCALAAKTFNDEAVDVIRNMDTFAMI
PVEVMNSEKLGRILEAVLALGNFLNSGTGRGGAHGFKLEALAMLSTVKDA
KGNTLLDYLIFMLERDNPGLLPLDDMPTLARSKELSLEAIGEEVQALLES
VTNVSEQIKQIGDDQTLAAFKAEMEVFAEEATKVREEIVSLRGLMMQKLQ
SMMQHFGERNKMSRGRQEDILRMLRDFSDDIISGLARAKERNERARKQAA
KSDAKKMGNVGGAAPAIGNGVEPGAGEVANGLASANVAVEVGGGDDGGGE
Q*

mRNA from alignment at NODE_3613_length_3179_cov_4.559909:2..1507+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7708.t1 ID=Gcaud7708.t1|Name=Gcaud7708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at NODE_3613_length_3179_cov_4.559909:2..1507+ (Gracilaria caudata M_176_S67 male)
ggcggacccggaggcggcgggcctggcggcggcggACCAGGTGGAAGAGG
CGCAGGGAATGCACCGGGTGCTGCGGGCGCAGTCGCCGCTGCCGCAGCCG
CGAGGAAGAATCAGGCGTCGAATGGACCTACGCCGCGAGCTCCAGGAGCG
CCGGCTGTTCCTGGAGCGCCGGGAGCGCCCGCTGTGCCGAAGGCTCCTGT
CGGACAGGTTGCCGGTAAGGATAACAGTGCGAGAGGACGTCAGAAGAAAC
CGCTTCATTGGGCAAAGGTCCCTATGAACTTGGTGAATAACTCCTTCTGG
CCATCTTTGGATGAGGGCAATGTGCGCCTGGATGAGGAGGAGATTGATGA
CCTGTTTGGCGTAGACGTTGTGGAGAGATTCCAGATCGCTGCCGCTGAGG
TTAAACCGGAAGTTCTCCCGCATAAGCGCAAGCATAATGTCAATATCTTG
TTGGCCAACTTGAAGATGAGTGCCGAGCACATTAAGGATGTCGTCAGAGT
TCCTACATACAAGGAGTTGGAGGCTGGTACTTTGCAGGCTTTGCTGCTTG
TATGTCCTACGCAGGAGGAGGAGATGTTGCTGGTACAAAACGCTAACATT
CGAGCTGAGGTTGATAAGACTGATGCGTTCATGATGGACTTGGCAGACTT
GAAGGGATTGCGTGGAAAGATTCTTTGCGCGTTGGCCGCCAAGACCTTTA
ACGATGAGGCTGTGGATGTCATCCGTAATATGGATACCTTTGCCATGATT
CCGGTCGAGGTCATGAACTCCGAAAAGCTTGGACGTATCCTGGAAGCTGT
GCTGGCGCTTGGTAACTTCCTCAACTCCGGTACTGGTCGTGGCGGTGCTC
ATGGCTTCAAGTTGGAAGCGTTGGCTATGTTGAGTACCGTGAAAGATGCC
AAGGGTAACACATTATTGGATTACCTTATCTTCATGTTGGAGAGGGACAA
CCCAGGGTTGTTGCCTTTGGATGACATGCCCACTCTGGCTAGATCAAAGG
AGCTTTCTCTGGAAGCGATTGGAGAGGAAGTTCAGGCTCTGTTGGAATCT
GTGACAAATGTGTCAGAGCAGATCAAGCAGATTGGTGACGATCAGACACT
CGCCGCATTCAAGGCTGAGATGGAGGTATTTGCTGAAGAGGCGACAAAGG
TTCGGGAAGAGATCGTATCCTTGAGAGGTCTAATGATGCAAAAGCTGCAG
AGCATGATGCAGCACTTTGGTGAGAGAAATAAGATGTCAAGAGGAAGGCA
GGAGGATATCTTGAGAATGTTGCGAGATTTCTCAGACGATATTATCTCCG
GGCTGGCGAGGGCCAAGGAGAGGAATGAACGCGCAAGAAAACAGGCGGCC
AAGAGCGATGCGAAGAAGATGGGCAATGTTGGGGGAGCGGCGCCTGCAAT
CGGAAACGGTGTAGAGCCTGGTGCAGGTGAGGTTGCCAATGGGTTGGCCA
GTGCGAACGTGGCTGTTGAGGTTGGCGGTGGAGACGATGGTGGCGGCGAG
CAGTGA

Coding sequence (CDS) from alignment at NODE_3613_length_3179_cov_4.559909:2..1507+

>Gcaud7708.t1 ID=Gcaud7708.t1|Name=Gcaud7708.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1506bp|location=Sequence derived from alignment at NODE_3613_length_3179_cov_4.559909:2..1507+ (Gracilaria caudata M_176_S67 male)
ggcggacccggaggcggcgggcctggcggcggcggACCAGGTGGAAGAGG
CGCAGGGAATGCACCGGGTGCTGCGGGCGCAGTCGCCGCTGCCGCAGCCG
CGAGGAAGAATCAGGCGTCGAATGGACCTACGCCGCGAGCTCCAGGAGCG
CCGGCTGTTCCTGGAGCGCCGGGAGCGCCCGCTGTGCCGAAGGCTCCTGT
CGGACAGGTTGCCGGTAAGGATAACAGTGCGAGAGGACGTCAGAAGAAAC
CGCTTCATTGGGCAAAGGTCCCTATGAACTTGGTGAATAACTCCTTCTGG
CCATCTTTGGATGAGGGCAATGTGCGCCTGGATGAGGAGGAGATTGATGA
CCTGTTTGGCGTAGACGTTGTGGAGAGATTCCAGATCGCTGCCGCTGAGG
TTAAACCGGAAGTTCTCCCGCATAAGCGCAAGCATAATGTCAATATCTTG
TTGGCCAACTTGAAGATGAGTGCCGAGCACATTAAGGATGTCGTCAGAGT
TCCTACATACAAGGAGTTGGAGGCTGGTACTTTGCAGGCTTTGCTGCTTG
TATGTCCTACGCAGGAGGAGGAGATGTTGCTGGTACAAAACGCTAACATT
CGAGCTGAGGTTGATAAGACTGATGCGTTCATGATGGACTTGGCAGACTT
GAAGGGATTGCGTGGAAAGATTCTTTGCGCGTTGGCCGCCAAGACCTTTA
ACGATGAGGCTGTGGATGTCATCCGTAATATGGATACCTTTGCCATGATT
CCGGTCGAGGTCATGAACTCCGAAAAGCTTGGACGTATCCTGGAAGCTGT
GCTGGCGCTTGGTAACTTCCTCAACTCCGGTACTGGTCGTGGCGGTGCTC
ATGGCTTCAAGTTGGAAGCGTTGGCTATGTTGAGTACCGTGAAAGATGCC
AAGGGTAACACATTATTGGATTACCTTATCTTCATGTTGGAGAGGGACAA
CCCAGGGTTGTTGCCTTTGGATGACATGCCCACTCTGGCTAGATCAAAGG
AGCTTTCTCTGGAAGCGATTGGAGAGGAAGTTCAGGCTCTGTTGGAATCT
GTGACAAATGTGTCAGAGCAGATCAAGCAGATTGGTGACGATCAGACACT
CGCCGCATTCAAGGCTGAGATGGAGGTATTTGCTGAAGAGGCGACAAAGG
TTCGGGAAGAGATCGTATCCTTGAGAGGTCTAATGATGCAAAAGCTGCAG
AGCATGATGCAGCACTTTGGTGAGAGAAATAAGATGTCAAGAGGAAGGCA
GGAGGATATCTTGAGAATGTTGCGAGATTTCTCAGACGATATTATCTCCG
GGCTGGCGAGGGCCAAGGAGAGGAATGAACGCGCAAGAAAACAGGCGGCC
AAGAGCGATGCGAAGAAGATGGGCAATGTTGGGGGAGCGGCGCCTGCAAT
CGGAAACGGTGTAGAGCCTGGTGCAGGTGAGGTTGCCAATGGGTTGGCCA
GTGCGAACGTGGCTGTTGAGGTTGGCGGTGGAGACGATGGTGGCGGCGAG
CAGTGA