Gcaud7697.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7697.t1
Unique Name	Gcaud7697.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	815

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_528_length_22897_cov_4.686837	contig	NODE_528_length_22897_cov_4.686837:9667..12111 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS254CT
PFAMs	C2,Lipase_3
Max annot lvl	2759\|Eukaryota
Evalue	1.73e-39
EggNOG OGs	KOG4569@1\|root,KOG4569@2759\|Eukaryota
Description	phospholipase A1 activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7697	Gcaud7697	Gracilaria caudata M_176_S67 male	gene	NODE_528_length_22897_cov_4.686837 9667..12111 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7697.t1.stop1	Gcaud7697.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_528_length_22897_cov_4.686837 9667..9669 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7697.t1.CDS1	Gcaud7697.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_528_length_22897_cov_4.686837 9667..12111 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7697.t1.exon1	Gcaud7697.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_528_length_22897_cov_4.686837 9667..12111 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7697.t1.start1	Gcaud7697.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_528_length_22897_cov_4.686837 12109..12111 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7697.t1	Gcaud7697.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_528_length_22897_cov_4.686837 9667..12111 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_528_length_22897_cov_4.686837:9667..12111-
coding sequence from alignment at NODE_528_length_22897_cov_4.686837:9667..12111-

mRNA sequence

>Gcaud7697.t1 ID=Gcaud7697.t1|Name=Gcaud7697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=815bp
MTDSEGDHRFDDATESFSSDDMLSLAHTDEEIAVPLTPHFRMFKKLEVID
SRRINLMARTYNLVALLGFAFSATVIILARTAFSRNFQGIPGQFPDLSVY
TFPRAFILVDSILFYTLFAYSLVLLTIFSFVLIKQGKTRLLNEQVWVLLL
LLSTVVYMIPFEASIRLRRDYLELPVPESGSSVNIIDVFVCIRFCSFSFL
YILYLWFGTHSYRYLNRTVSFMDWKFYAPKLVLVLTYVAYKLGILFVYRI
TFSEMPFASFVGFFNLYGAVDEWPTLGVVTVVVLTALELMIAFWICFDVQ
RTFRVLQKAPYVDHRTKILGYRFFLHQQAVFNFVYIITYVLMLFGLPKGA
QILQFSIHVREQAGRGSYFDVLYVPFGLNICILAFATIEAYTNLPAEINL
KSSILRCQYKYLNHEKEHCEPVVYRNREPHSFSNAGLELRPNCFIMQTTV
ELFNLSWFVYYHGTEKEDKLGLAQNSLPVKIRDFFYDKTTDTKAIVAESS
DRITVAFKGTTSTQNLRTDIKVLHKSLAQVLGIEDVSELPRQSMSSMWCK
YLRRAKVHAGFADAYHSIKRELRQILSSIFREKERQVLFTGHSLGGALAT
LCSIDALVTLGVPGGRIAVSTFGSPRVGNEAFQELYDAEILMHWRIVAGG
DIISRLPKLGYRHVGKKVILTSSGELFIDPSALEMIFWHSQTASIVHHRK
ACYLLAIDAWCKSLGTDYKPDFWPFPVSENDSRKFVTTFQKPNSRRANYA
SVSRTYFGRRPADRAKRLQVFADAIDELRSDHQELMEPNEDVVFLWQKLT
ASALNRHSVAGLPV*

spliced messenger RNA

>Gcaud7697.t1 ID=Gcaud7697.t1|Name=Gcaud7697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at NODE_528_length_22897_cov_4.686837:9667..12111- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGATTCTGAGGGTGATCACAGATTTGACGATGCAACAGAAAGCTT
CTCGTCAGATGATATGCTTTCACTAGCACATACTGACGAAGAAATCGCTG
TACCCCTAACCCCGCACTTCAGGATGTTCAAGAAGCTTGAGGTTATCGAT
TCAAGACGCATCAACCTCATGGCGAGAACATACAACCTTGTTGCTCTTCT
CGGATTTGCATTCTCTGCAACAGTGATAATCTTGGCTAGAACCGCATTTT
CTAGGAACTTCCAGGGTATTCCCGGCCAATTTCCAGACCTCTCTGTTTAT
ACATTCCCGAGAGCGTTCATATTGGTTGACAGCATTTTGTTCTACACGTT
ATTCGCATACTCCTTGGTATTGCTCACTATCTTTTCCTTTGTTCTCATAA
AACAAGGGAAAACTCGGCTTCTCAACGAACAAGTTTGGGTACTCTTGCTC
CTTTTATCCACGGTTGTGTACATGATTCCATTTGAAGCAAGCATCCGTTT
AAGACGAGACTATCTCGAACTCCCAGTCCCGGAATCAGGGAGTAGTGTCA
ATATCATCGACGTATTCGTATGTATCCGTTTCTGTTCTTTTTCGTTCCTC
TATATCCTTTATTTATGGTTTGGAACGCATAGTTACAGGTATCTAAACAG
GACAGTTTCTTTCATGGACTGGAAATTCTACGCTCCGAAGTTAGTTCTGG
TCCTAACTTACGTCGCTTACAAGCTTGGGATTCTGTTTGTCTATCGTATA
ACATTCTCGGAGATGCCCTTTGCTTCCTTTGTTGGCTTTTTCAACTTATA
TGGCGCTGTAGATGAATGGCCCACGTTAGGAGTGGTAACAGTTGTTGTTT
TGACTGCATTGGAGTTGATGATTGCATTTTGGATATGCTTCGATGTACAG
AGAACATTCAGAGTGCTCCAGAAAGCGCCCTACGTTGATCATAGAACGAA
AATCTTAGGGTATCGTTTCTTTCTACATCAGCAAGCCGTATTCAACTTCG
TTTATATTATCACGTACGTGTTAATGCTCTTTGGCCTACCAAAAGGGGCT
CAGATACTGCAATTTTCCATTCACGTGAGAGAGCAAGCCGGGCGAGGCTC
ATATTTCGATGTTCTCTACGTCCCCTTCGGCCTAAACATATGTATCCTGG
CTTTCGCTACAATTGAAGCGTATACGAACCTACCTGCGGAAATCAACTTG
AAAAGTAGTATTCTTCGTTGTCAATACAAATATCTTAATCATGAGAAGGA
GCACTGCGAACCTGTTGTGTATCGGAACAGGGAACCCCATTCGTTTTCAA
ATGCTGGTTTGGAACTGCGCCCCAATTGCTTCATCATGCAGACCACGGTT
GAACTTTTCAACTTGTCATGGTTTGTCTACTACCATGGGACTGAGAAGGA
AGACAAACTGGGCCTAGCGCAAAATAGTCTGCCAGTTAAGATAAGGGACT
TTTTTTATGACAAGACCACGGACACAAAAGCCATTGTTGCCGAATCCTCA
GATAGGATTACCGTTGCGTTCAAGGGAACCACAAGCACCCAAAATCTGCG
TACCGATATCAAAGTTTTACACAAGTCGCTTGCCCAGGTGTTGGGCATAG
AAGATGTCTCAGAGCTCCCACGGCAATCGATGTCATCCATGTGGTGCAAA
TATTTACGACGAGCAAAAGTTCATGCGGGATTTGCTGATGCTTATCACTC
CATAAAAAGAGAACTCCGTCAAATATTGTCATCTATCTTCAGAGAGAAAG
AGCGCCAGGTGCTTTTTACAGGACATAGTCTTGGCGGGGCATTGGCAACC
CTATGCAGCATAGATGCTTTGGTTACCCTGGGAGTTCCAGGTGGAAGGAT
TGCAGTGTCTACTTTCGGATCTCCACGGGTTGGTAACGAAGCGTTCCAGG
AGCTTTACGATGCTGAGATTCTGATGCACTGGCGTATTGTTGCAGGGGGT
GATATTATTTCTCGCCTTCCTAAACTTGGCTACAGACACGTCGGAAAGAA
GGTTATCCTCACATCTAGTGGGGAGCTTTTCATTGACCCTAGTGCCTTGG
AGATGATCTTCTGGCACTCCCAGACAGCCTCAATTGTACATCACCGAAAG
GCATGCTACTTGCTTGCCATAGATGCTTGGTGCAAGAGTCTGGGGACCGA
TTACAAGCCAGACTTCTGGCCTTTCCCAGTATCCGAGAACGACAGCCGCA
AGTTTGTTACGACTTTTCAAAAACCCAACAGCAGAAGAGCGAACTACGCT
TCGGTGTCAAGAACATATTTCGGAAGACGACCTGCAGATCGAGCCAAGCG
CTTGCAAGTCTTCGCGGATGCAATTGATGAGTTACGAAGTGACCACCAAG
AACTCATGGAACCCAATGAAGATGTCGTTTTTCTATGGCAGAAGTTGACC
GCATCTGCTCTCAATCGACATAGTGTAGCTGGTCTTCCCGTGTAG

protein sequence of Gcaud7697.t1

>Gcaud7697.t1 ID=Gcaud7697.t1|Name=Gcaud7697.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=815bp
MTDSEGDHRFDDATESFSSDDMLSLAHTDEEIAVPLTPHFRMFKKLEVID
SRRINLMARTYNLVALLGFAFSATVIILARTAFSRNFQGIPGQFPDLSVY
TFPRAFILVDSILFYTLFAYSLVLLTIFSFVLIKQGKTRLLNEQVWVLLL
LLSTVVYMIPFEASIRLRRDYLELPVPESGSSVNIIDVFVCIRFCSFSFL
YILYLWFGTHSYRYLNRTVSFMDWKFYAPKLVLVLTYVAYKLGILFVYRI
TFSEMPFASFVGFFNLYGAVDEWPTLGVVTVVVLTALELMIAFWICFDVQ
RTFRVLQKAPYVDHRTKILGYRFFLHQQAVFNFVYIITYVLMLFGLPKGA
QILQFSIHVREQAGRGSYFDVLYVPFGLNICILAFATIEAYTNLPAEINL
KSSILRCQYKYLNHEKEHCEPVVYRNREPHSFSNAGLELRPNCFIMQTTV
ELFNLSWFVYYHGTEKEDKLGLAQNSLPVKIRDFFYDKTTDTKAIVAESS
DRITVAFKGTTSTQNLRTDIKVLHKSLAQVLGIEDVSELPRQSMSSMWCK
YLRRAKVHAGFADAYHSIKRELRQILSSIFREKERQVLFTGHSLGGALAT
LCSIDALVTLGVPGGRIAVSTFGSPRVGNEAFQELYDAEILMHWRIVAGG
DIISRLPKLGYRHVGKKVILTSSGELFIDPSALEMIFWHSQTASIVHHRK
ACYLLAIDAWCKSLGTDYKPDFWPFPVSENDSRKFVTTFQKPNSRRANYA
SVSRTYFGRRPADRAKRLQVFADAIDELRSDHQELMEPNEDVVFLWQKLT
ASALNRHSVAGLPV*

mRNA from alignment at NODE_528_length_22897_cov_4.686837:9667..12111-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7697.t1 ID=Gcaud7697.t1|Name=Gcaud7697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at NODE_528_length_22897_cov_4.686837:9667..12111- (Gracilaria caudata M_176_S67 male)
ATGACGGATTCTGAGGGTGATCACAGATTTGACGATGCAACAGAAAGCTT
CTCGTCAGATGATATGCTTTCACTAGCACATACTGACGAAGAAATCGCTG
TACCCCTAACCCCGCACTTCAGGATGTTCAAGAAGCTTGAGGTTATCGAT
TCAAGACGCATCAACCTCATGGCGAGAACATACAACCTTGTTGCTCTTCT
CGGATTTGCATTCTCTGCAACAGTGATAATCTTGGCTAGAACCGCATTTT
CTAGGAACTTCCAGGGTATTCCCGGCCAATTTCCAGACCTCTCTGTTTAT
ACATTCCCGAGAGCGTTCATATTGGTTGACAGCATTTTGTTCTACACGTT
ATTCGCATACTCCTTGGTATTGCTCACTATCTTTTCCTTTGTTCTCATAA
AACAAGGGAAAACTCGGCTTCTCAACGAACAAGTTTGGGTACTCTTGCTC
CTTTTATCCACGGTTGTGTACATGATTCCATTTGAAGCAAGCATCCGTTT
AAGACGAGACTATCTCGAACTCCCAGTCCCGGAATCAGGGAGTAGTGTCA
ATATCATCGACGTATTCGTATGTATCCGTTTCTGTTCTTTTTCGTTCCTC
TATATCCTTTATTTATGGTTTGGAACGCATAGTTACAGGTATCTAAACAG
GACAGTTTCTTTCATGGACTGGAAATTCTACGCTCCGAAGTTAGTTCTGG
TCCTAACTTACGTCGCTTACAAGCTTGGGATTCTGTTTGTCTATCGTATA
ACATTCTCGGAGATGCCCTTTGCTTCCTTTGTTGGCTTTTTCAACTTATA
TGGCGCTGTAGATGAATGGCCCACGTTAGGAGTGGTAACAGTTGTTGTTT
TGACTGCATTGGAGTTGATGATTGCATTTTGGATATGCTTCGATGTACAG
AGAACATTCAGAGTGCTCCAGAAAGCGCCCTACGTTGATCATAGAACGAA
AATCTTAGGGTATCGTTTCTTTCTACATCAGCAAGCCGTATTCAACTTCG
TTTATATTATCACGTACGTGTTAATGCTCTTTGGCCTACCAAAAGGGGCT
CAGATACTGCAATTTTCCATTCACGTGAGAGAGCAAGCCGGGCGAGGCTC
ATATTTCGATGTTCTCTACGTCCCCTTCGGCCTAAACATATGTATCCTGG
CTTTCGCTACAATTGAAGCGTATACGAACCTACCTGCGGAAATCAACTTG
AAAAGTAGTATTCTTCGTTGTCAATACAAATATCTTAATCATGAGAAGGA
GCACTGCGAACCTGTTGTGTATCGGAACAGGGAACCCCATTCGTTTTCAA
ATGCTGGTTTGGAACTGCGCCCCAATTGCTTCATCATGCAGACCACGGTT
GAACTTTTCAACTTGTCATGGTTTGTCTACTACCATGGGACTGAGAAGGA
AGACAAACTGGGCCTAGCGCAAAATAGTCTGCCAGTTAAGATAAGGGACT
TTTTTTATGACAAGACCACGGACACAAAAGCCATTGTTGCCGAATCCTCA
GATAGGATTACCGTTGCGTTCAAGGGAACCACAAGCACCCAAAATCTGCG
TACCGATATCAAAGTTTTACACAAGTCGCTTGCCCAGGTGTTGGGCATAG
AAGATGTCTCAGAGCTCCCACGGCAATCGATGTCATCCATGTGGTGCAAA
TATTTACGACGAGCAAAAGTTCATGCGGGATTTGCTGATGCTTATCACTC
CATAAAAAGAGAACTCCGTCAAATATTGTCATCTATCTTCAGAGAGAAAG
AGCGCCAGGTGCTTTTTACAGGACATAGTCTTGGCGGGGCATTGGCAACC
CTATGCAGCATAGATGCTTTGGTTACCCTGGGAGTTCCAGGTGGAAGGAT
TGCAGTGTCTACTTTCGGATCTCCACGGGTTGGTAACGAAGCGTTCCAGG
AGCTTTACGATGCTGAGATTCTGATGCACTGGCGTATTGTTGCAGGGGGT
GATATTATTTCTCGCCTTCCTAAACTTGGCTACAGACACGTCGGAAAGAA
GGTTATCCTCACATCTAGTGGGGAGCTTTTCATTGACCCTAGTGCCTTGG
AGATGATCTTCTGGCACTCCCAGACAGCCTCAATTGTACATCACCGAAAG
GCATGCTACTTGCTTGCCATAGATGCTTGGTGCAAGAGTCTGGGGACCGA
TTACAAGCCAGACTTCTGGCCTTTCCCAGTATCCGAGAACGACAGCCGCA
AGTTTGTTACGACTTTTCAAAAACCCAACAGCAGAAGAGCGAACTACGCT
TCGGTGTCAAGAACATATTTCGGAAGACGACCTGCAGATCGAGCCAAGCG
CTTGCAAGTCTTCGCGGATGCAATTGATGAGTTACGAAGTGACCACCAAG
AACTCATGGAACCCAATGAAGATGTCGTTTTTCTATGGCAGAAGTTGACC
GCATCTGCTCTCAATCGACATAGTGTAGCTGGTCTTCCCGTGTAG

Coding sequence (CDS) from alignment at NODE_528_length_22897_cov_4.686837:9667..12111-

>Gcaud7697.t1 ID=Gcaud7697.t1|Name=Gcaud7697.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2445bp|location=Sequence derived from alignment at NODE_528_length_22897_cov_4.686837:9667..12111- (Gracilaria caudata M_176_S67 male)
ATGACGGATTCTGAGGGTGATCACAGATTTGACGATGCAACAGAAAGCTT
CTCGTCAGATGATATGCTTTCACTAGCACATACTGACGAAGAAATCGCTG
TACCCCTAACCCCGCACTTCAGGATGTTCAAGAAGCTTGAGGTTATCGAT
TCAAGACGCATCAACCTCATGGCGAGAACATACAACCTTGTTGCTCTTCT
CGGATTTGCATTCTCTGCAACAGTGATAATCTTGGCTAGAACCGCATTTT
CTAGGAACTTCCAGGGTATTCCCGGCCAATTTCCAGACCTCTCTGTTTAT
ACATTCCCGAGAGCGTTCATATTGGTTGACAGCATTTTGTTCTACACGTT
ATTCGCATACTCCTTGGTATTGCTCACTATCTTTTCCTTTGTTCTCATAA
AACAAGGGAAAACTCGGCTTCTCAACGAACAAGTTTGGGTACTCTTGCTC
CTTTTATCCACGGTTGTGTACATGATTCCATTTGAAGCAAGCATCCGTTT
AAGACGAGACTATCTCGAACTCCCAGTCCCGGAATCAGGGAGTAGTGTCA
ATATCATCGACGTATTCGTATGTATCCGTTTCTGTTCTTTTTCGTTCCTC
TATATCCTTTATTTATGGTTTGGAACGCATAGTTACAGGTATCTAAACAG
GACAGTTTCTTTCATGGACTGGAAATTCTACGCTCCGAAGTTAGTTCTGG
TCCTAACTTACGTCGCTTACAAGCTTGGGATTCTGTTTGTCTATCGTATA
ACATTCTCGGAGATGCCCTTTGCTTCCTTTGTTGGCTTTTTCAACTTATA
TGGCGCTGTAGATGAATGGCCCACGTTAGGAGTGGTAACAGTTGTTGTTT
TGACTGCATTGGAGTTGATGATTGCATTTTGGATATGCTTCGATGTACAG
AGAACATTCAGAGTGCTCCAGAAAGCGCCCTACGTTGATCATAGAACGAA
AATCTTAGGGTATCGTTTCTTTCTACATCAGCAAGCCGTATTCAACTTCG
TTTATATTATCACGTACGTGTTAATGCTCTTTGGCCTACCAAAAGGGGCT
CAGATACTGCAATTTTCCATTCACGTGAGAGAGCAAGCCGGGCGAGGCTC
ATATTTCGATGTTCTCTACGTCCCCTTCGGCCTAAACATATGTATCCTGG
CTTTCGCTACAATTGAAGCGTATACGAACCTACCTGCGGAAATCAACTTG
AAAAGTAGTATTCTTCGTTGTCAATACAAATATCTTAATCATGAGAAGGA
GCACTGCGAACCTGTTGTGTATCGGAACAGGGAACCCCATTCGTTTTCAA
ATGCTGGTTTGGAACTGCGCCCCAATTGCTTCATCATGCAGACCACGGTT
GAACTTTTCAACTTGTCATGGTTTGTCTACTACCATGGGACTGAGAAGGA
AGACAAACTGGGCCTAGCGCAAAATAGTCTGCCAGTTAAGATAAGGGACT
TTTTTTATGACAAGACCACGGACACAAAAGCCATTGTTGCCGAATCCTCA
GATAGGATTACCGTTGCGTTCAAGGGAACCACAAGCACCCAAAATCTGCG
TACCGATATCAAAGTTTTACACAAGTCGCTTGCCCAGGTGTTGGGCATAG
AAGATGTCTCAGAGCTCCCACGGCAATCGATGTCATCCATGTGGTGCAAA
TATTTACGACGAGCAAAAGTTCATGCGGGATTTGCTGATGCTTATCACTC
CATAAAAAGAGAACTCCGTCAAATATTGTCATCTATCTTCAGAGAGAAAG
AGCGCCAGGTGCTTTTTACAGGACATAGTCTTGGCGGGGCATTGGCAACC
CTATGCAGCATAGATGCTTTGGTTACCCTGGGAGTTCCAGGTGGAAGGAT
TGCAGTGTCTACTTTCGGATCTCCACGGGTTGGTAACGAAGCGTTCCAGG
AGCTTTACGATGCTGAGATTCTGATGCACTGGCGTATTGTTGCAGGGGGT
GATATTATTTCTCGCCTTCCTAAACTTGGCTACAGACACGTCGGAAAGAA
GGTTATCCTCACATCTAGTGGGGAGCTTTTCATTGACCCTAGTGCCTTGG
AGATGATCTTCTGGCACTCCCAGACAGCCTCAATTGTACATCACCGAAAG
GCATGCTACTTGCTTGCCATAGATGCTTGGTGCAAGAGTCTGGGGACCGA
TTACAAGCCAGACTTCTGGCCTTTCCCAGTATCCGAGAACGACAGCCGCA
AGTTTGTTACGACTTTTCAAAAACCCAACAGCAGAAGAGCGAACTACGCT
TCGGTGTCAAGAACATATTTCGGAAGACGACCTGCAGATCGAGCCAAGCG
CTTGCAAGTCTTCGCGGATGCAATTGATGAGTTACGAAGTGACCACCAAG
AACTCATGGAACCCAATGAAGATGTCGTTTTTCTATGGCAGAAGTTGACC
GCATCTGCTCTCAATCGACATAGTGTAGCTGGTCTTCCCGTGTAG