Gcaud7692.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7692.t1
Unique Name	Gcaud7692.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	655

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1176_length_12996_cov_3.628826	contig	NODE_1176_length_12996_cov_3.628826:6213..8275 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_07461T0
PFAMs	ABC2_membrane,ABC_tran
Max annot lvl	33154\|Opisthokonta
Evalue	6.03e-191
EggNOG OGs	COG1131@1\|root,KOG0061@2759\|Eukaryota,38CVQ@33154\|Opisthokonta
Description	ATPase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7692	Gcaud7692	Gracilaria caudata M_176_S67 male	gene	NODE_1176_length_12996_cov_3.628826 6213..8275 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7692.t1	Gcaud7692.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1176_length_12996_cov_3.628826 6213..8275 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7692.t1.start1	Gcaud7692.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1176_length_12996_cov_3.628826 6213..6215 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7692.t1.CDS1	Gcaud7692.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1176_length_12996_cov_3.628826 6213..6233 +
Gcaud7692.t1.CDS2	Gcaud7692.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1176_length_12996_cov_3.628826 6332..8275 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7692.t1.exon1	Gcaud7692.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1176_length_12996_cov_3.628826 6213..6233 +
Gcaud7692.t1.exon2	Gcaud7692.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1176_length_12996_cov_3.628826 6332..8275 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7692.t1.intron1	Gcaud7692.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1176_length_12996_cov_3.628826 6234..6331 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7692.t1.stop1	Gcaud7692.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1176_length_12996_cov_3.628826 8273..8275 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1176_length_12996_cov_3.628826:6213..8275+
coding sequence from alignment at NODE_1176_length_12996_cov_3.628826:6213..8275+

mRNA sequence

>Gcaud7692.t1 ID=Gcaud7692.t1|Name=Gcaud7692.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=655bp
MDAAVQTVMYNGVDITYDPNEQLDFDGELSASARHAERVDLVWKNLTFAV
PAKGAKKAKNKHADPNGDASAASPREKLILKSMSGEARAGTMLAVMGSSG
AGKTSLLNLLAGRVSSSKGARATGAVYVNGEPRDYNKFRKLAAYVIQDDD
MFAELTVQEQLTYAALLRLPASMPKHKKLMRVQKVIQELGLGKVKDTMIG
NQIVRGISGGERKRVNIGTELVTNPSLLFLDEPTTGLDSFNALNVMTALR
QLASNGRTIISTIHQPRSSIFALFDQLCLLSEGRVMYFGPAKDAVDYFSA
LNFKSPSQFNPADFFLDLLSIDPRSTEREANTEARVEFLGDVYAKQAKPI
AIEATPDVEVGEGAVADAEDKVHFKEGMYQTSWLNEFSVLCNRAMKLAFR
ERAANGARLGQVIFFSILLGLIWLNNGREEELAKRRSLVGILFFISINQA
FGGVFAVIFGFPLERSVVTRERASNMYRTSSYYMSKTVTDLPKSLFFNTL
FALIVYWMVGLKPTAGAFFIFLLVIFLTTVLAESLSIAVSILAGDAQTAA
GIIPVFIILALLFGGFFIGSEDLGDWIAWAKYLSFIFYSFNALGHNEFTG
RAEADQILPDFNDLSIAENILALFALMVGFRFIGYLFLKFLRGPKFLKLE
GETQ*

spliced messenger RNA

>Gcaud7692.t1 ID=Gcaud7692.t1|Name=Gcaud7692.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at NODE_1176_length_12996_cov_3.628826:6213..8275+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCGCCGTGCAGACGGTCATGTACAATGGCGTGGACATCACGTA
CGACCCCAATGAACAACTCGACTTTGACGGCGAACTCAGCGCCTCCGCGC
GTCACGCCGAGCGCGTCGATCTGGTGTGGAAGAATCTCACCTTTGCCGTT
CCAGCAAAGGGCGCCAAGAAGGCAAAAAACAAGCACGCCGATCCGAACGG
CGACGCTTCCGCCGCGTCGCCGCGCGAGAAGCTCATTCTCAAGTCCATGT
CCGGCGAGGCGCGCGCCGGCACCATGCTGGCGGTGATGGGCAGCTCCGGC
GCGGGCAAAACCAGTCTGCTCAATTTGCTTGCGGGACGCGTGAGCTCCAG
CAAGGGCGCCAGGGCCACCGGCGCCGTGTACGTCAACGGCGAGCCCAGAG
ACTATAACAAGTTCAGAAAGCTTGCCGCGTACGTGATTCAGGACGACGAC
ATGTTTGCCGAGCTCACGGTGCAGGAACAACTCACGTATGCGGCGTTGCT
GCGTTTGCCGGCGAGCATGCCCAAGCATAAGAAGCTCATGCGCGTGCAGA
AGGTGATCCAGGAATTGGGGCTTGGAAAGGTGAAGGACACCATGATTGGC
AATCAGATTGTGCGCGGAATCAGCGGTGGTGAGCGTAAGCGAGTGAATAT
TGGCACGGAGTTGGTCACGAATCCGTCGCTGCTGTTTCTGGATGAGCCCA
CTACTGGCTTGGACAGTTTCAACGCGCTCAACGTGATGACTGCGTTGCGT
CAATTGGCAAGtaacgggcgtaccattatctccaccattcatcaaccgcg
ctccagtatctttgctttattcgaccaattgtgtctgctgtcggagggtc
gcgtcatgtactttggaccCGCCAAGGACGCGGTGGATTACTTTTCGGCG
CTCAACTTTAAGTCACCGTCGCAGTTCAATCCCGCCGATTTCTTCCTGGA
TTTGCTGAGCATTGATCCGCGTTCTACAGAACGTGAGGCCAACACAGAGG
CTCGTGTGGAGTTTCTGGGAGACGTGTACGCCAAACAGGCCAAACCAATT
GCCATCGAAGCCACGCCGGATGTGGAGGTGGGTGAGGGCGCTGTGGCTGA
CGCCGAGGACAAGGTTCACTTCAAGGAAGGCATGTATCAAACCAGTTGGC
TGAACGAATTTAGCGTGCTGTGTAATCGTGCGATGAAGCTGGCGTTCCGC
GAACGCGCGGCGAATGGCGCTCGCTTGGGACAGGTGATTTTCTTCAGTAT
TCTGTTGGGATTGATCTGGTTGAACAATGGACGAGAAGAGGAGCTTGCGA
AGAGACGGTCTTTGGTTGGTATCTTGTTCTTCATTTCGATTAATCAGGCG
TTTGGTGGAGTGTTTGCGGTGATCTTTGGGTTCCCTCTGGAACGCAGTGT
GGTGACGAGGGAACGAGCGTCAAACATGTATCGCACGAGTTCGTACTACA
TGAGCAAGACGGTGACGGATTTGCCAAAGTCACTGTTCTTCAACACATTG
TTCGCGCTGATTGTTTATTGGATGGTGGGACTGAAACCGACCGCGGGGGC
GTTTTTCATCTTTCTGTTGGTGATCTTCCTGACGACTGTCCTGGCAGAAT
CGCTGTCGATCGCGGTGTCAATTCTGGCTGGCGACGCGCAGACGGCGGCC
GGTATCATCCCCGTGTTCATCATCCTGGCGCTGTTGTTTGGTGGCTTTTT
CATTGGCAGCGAGGACCTGGGCGACTGGATTGCGTGGGCAAAGTATCTGT
CGTTCATTTTCTATTCGTTCAACGCGCTGGGACACAACGAATTCACGGGG
CGGGCCGAGGCGGATCAGATTCTGCCTGACTTCAATGACCTGAGCATTGC
GGAGAACATCCTGGCGCTGTTTGCGCTCATGGTGGGGTTCAGGTTTATTG
GGTACCTGTTCCTCAAGTTTTTACGCGGACCCAAGTTCCTGAAACTGGAG
GGCGAGACGCAGTAG

protein sequence of Gcaud7692.t1

>Gcaud7692.t1 ID=Gcaud7692.t1|Name=Gcaud7692.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=655bp
MDAAVQTVMYNGVDITYDPNEQLDFDGELSASARHAERVDLVWKNLTFAV
PAKGAKKAKNKHADPNGDASAASPREKLILKSMSGEARAGTMLAVMGSSG
AGKTSLLNLLAGRVSSSKGARATGAVYVNGEPRDYNKFRKLAAYVIQDDD
MFAELTVQEQLTYAALLRLPASMPKHKKLMRVQKVIQELGLGKVKDTMIG
NQIVRGISGGERKRVNIGTELVTNPSLLFLDEPTTGLDSFNALNVMTALR
QLASNGRTIISTIHQPRSSIFALFDQLCLLSEGRVMYFGPAKDAVDYFSA
LNFKSPSQFNPADFFLDLLSIDPRSTEREANTEARVEFLGDVYAKQAKPI
AIEATPDVEVGEGAVADAEDKVHFKEGMYQTSWLNEFSVLCNRAMKLAFR
ERAANGARLGQVIFFSILLGLIWLNNGREEELAKRRSLVGILFFISINQA
FGGVFAVIFGFPLERSVVTRERASNMYRTSSYYMSKTVTDLPKSLFFNTL
FALIVYWMVGLKPTAGAFFIFLLVIFLTTVLAESLSIAVSILAGDAQTAA
GIIPVFIILALLFGGFFIGSEDLGDWIAWAKYLSFIFYSFNALGHNEFTG
RAEADQILPDFNDLSIAENILALFALMVGFRFIGYLFLKFLRGPKFLKLE
GETQ*

mRNA from alignment at NODE_1176_length_12996_cov_3.628826:6213..8275+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7692.t1 ID=Gcaud7692.t1|Name=Gcaud7692.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2063bp|location=Sequence derived from alignment at NODE_1176_length_12996_cov_3.628826:6213..8275+ (Gracilaria caudata M_176_S67 male)
ATGGACGCCGCCGTGCAGACGGTACGTACCCTTCGTACCTCCAACAACCA
GTCCCCACATTTCGTTTTTCACGTCTCTAACCAGCGTTTTTGTGTGTTGC
GCGGTGGCCGTGCGCGTAGGTCATGTACAATGGCGTGGACATCACGTACG
ACCCCAATGAACAACTCGACTTTGACGGCGAACTCAGCGCCTCCGCGCGT
CACGCCGAGCGCGTCGATCTGGTGTGGAAGAATCTCACCTTTGCCGTTCC
AGCAAAGGGCGCCAAGAAGGCAAAAAACAAGCACGCCGATCCGAACGGCG
ACGCTTCCGCCGCGTCGCCGCGCGAGAAGCTCATTCTCAAGTCCATGTCC
GGCGAGGCGCGCGCCGGCACCATGCTGGCGGTGATGGGCAGCTCCGGCGC
GGGCAAAACCAGTCTGCTCAATTTGCTTGCGGGACGCGTGAGCTCCAGCA
AGGGCGCCAGGGCCACCGGCGCCGTGTACGTCAACGGCGAGCCCAGAGAC
TATAACAAGTTCAGAAAGCTTGCCGCGTACGTGATTCAGGACGACGACAT
GTTTGCCGAGCTCACGGTGCAGGAACAACTCACGTATGCGGCGTTGCTGC
GTTTGCCGGCGAGCATGCCCAAGCATAAGAAGCTCATGCGCGTGCAGAAG
GTGATCCAGGAATTGGGGCTTGGAAAGGTGAAGGACACCATGATTGGCAA
TCAGATTGTGCGCGGAATCAGCGGTGGTGAGCGTAAGCGAGTGAATATTG
GCACGGAGTTGGTCACGAATCCGTCGCTGCTGTTTCTGGATGAGCCCACT
ACTGGCTTGGACAGTTTCAACGCGCTCAACGTGATGACTGCGTTGCGTCA
ATTGGCAAGtaacgggcgtaccattatctccaccattcatcaaccgcgct
ccagtatctttgctttattcgaccaattgtgtctgctgtcggagggtcgc
gtcatgtactttggaccCGCCAAGGACGCGGTGGATTACTTTTCGGCGCT
CAACTTTAAGTCACCGTCGCAGTTCAATCCCGCCGATTTCTTCCTGGATT
TGCTGAGCATTGATCCGCGTTCTACAGAACGTGAGGCCAACACAGAGGCT
CGTGTGGAGTTTCTGGGAGACGTGTACGCCAAACAGGCCAAACCAATTGC
CATCGAAGCCACGCCGGATGTGGAGGTGGGTGAGGGCGCTGTGGCTGACG
CCGAGGACAAGGTTCACTTCAAGGAAGGCATGTATCAAACCAGTTGGCTG
AACGAATTTAGCGTGCTGTGTAATCGTGCGATGAAGCTGGCGTTCCGCGA
ACGCGCGGCGAATGGCGCTCGCTTGGGACAGGTGATTTTCTTCAGTATTC
TGTTGGGATTGATCTGGTTGAACAATGGACGAGAAGAGGAGCTTGCGAAG
AGACGGTCTTTGGTTGGTATCTTGTTCTTCATTTCGATTAATCAGGCGTT
TGGTGGAGTGTTTGCGGTGATCTTTGGGTTCCCTCTGGAACGCAGTGTGG
TGACGAGGGAACGAGCGTCAAACATGTATCGCACGAGTTCGTACTACATG
AGCAAGACGGTGACGGATTTGCCAAAGTCACTGTTCTTCAACACATTGTT
CGCGCTGATTGTTTATTGGATGGTGGGACTGAAACCGACCGCGGGGGCGT
TTTTCATCTTTCTGTTGGTGATCTTCCTGACGACTGTCCTGGCAGAATCG
CTGTCGATCGCGGTGTCAATTCTGGCTGGCGACGCGCAGACGGCGGCCGG
TATCATCCCCGTGTTCATCATCCTGGCGCTGTTGTTTGGTGGCTTTTTCA
TTGGCAGCGAGGACCTGGGCGACTGGATTGCGTGGGCAAAGTATCTGTCG
TTCATTTTCTATTCGTTCAACGCGCTGGGACACAACGAATTCACGGGGCG
GGCCGAGGCGGATCAGATTCTGCCTGACTTCAATGACCTGAGCATTGCGG
AGAACATCCTGGCGCTGTTTGCGCTCATGGTGGGGTTCAGGTTTATTGGG
TACCTGTTCCTCAAGTTTTTACGCGGACCCAAGTTCCTGAAACTGGAGGG
CGAGACGCAGTAG

Coding sequence (CDS) from alignment at NODE_1176_length_12996_cov_3.628826:6213..8275+

>Gcaud7692.t1 ID=Gcaud7692.t1|Name=Gcaud7692.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1965bp|location=Sequence derived from alignment at NODE_1176_length_12996_cov_3.628826:6213..8275+ (Gracilaria caudata M_176_S67 male)
ATGGACGCCGCCGTGCAGACGGTCATGTACAATGGCGTGGACATCACGTA
CGACCCCAATGAACAACTCGACTTTGACGGCGAACTCAGCGCCTCCGCGC
GTCACGCCGAGCGCGTCGATCTGGTGTGGAAGAATCTCACCTTTGCCGTT
CCAGCAAAGGGCGCCAAGAAGGCAAAAAACAAGCACGCCGATCCGAACGG
CGACGCTTCCGCCGCGTCGCCGCGCGAGAAGCTCATTCTCAAGTCCATGT
CCGGCGAGGCGCGCGCCGGCACCATGCTGGCGGTGATGGGCAGCTCCGGC
GCGGGCAAAACCAGTCTGCTCAATTTGCTTGCGGGACGCGTGAGCTCCAG
CAAGGGCGCCAGGGCCACCGGCGCCGTGTACGTCAACGGCGAGCCCAGAG
ACTATAACAAGTTCAGAAAGCTTGCCGCGTACGTGATTCAGGACGACGAC
ATGTTTGCCGAGCTCACGGTGCAGGAACAACTCACGTATGCGGCGTTGCT
GCGTTTGCCGGCGAGCATGCCCAAGCATAAGAAGCTCATGCGCGTGCAGA
AGGTGATCCAGGAATTGGGGCTTGGAAAGGTGAAGGACACCATGATTGGC
AATCAGATTGTGCGCGGAATCAGCGGTGGTGAGCGTAAGCGAGTGAATAT
TGGCACGGAGTTGGTCACGAATCCGTCGCTGCTGTTTCTGGATGAGCCCA
CTACTGGCTTGGACAGTTTCAACGCGCTCAACGTGATGACTGCGTTGCGT
CAATTGGCAAGtaacgggcgtaccattatctccaccattcatcaaccgcg
ctccagtatctttgctttattcgaccaattgtgtctgctgtcggagggtc
gcgtcatgtactttggaccCGCCAAGGACGCGGTGGATTACTTTTCGGCG
CTCAACTTTAAGTCACCGTCGCAGTTCAATCCCGCCGATTTCTTCCTGGA
TTTGCTGAGCATTGATCCGCGTTCTACAGAACGTGAGGCCAACACAGAGG
CTCGTGTGGAGTTTCTGGGAGACGTGTACGCCAAACAGGCCAAACCAATT
GCCATCGAAGCCACGCCGGATGTGGAGGTGGGTGAGGGCGCTGTGGCTGA
CGCCGAGGACAAGGTTCACTTCAAGGAAGGCATGTATCAAACCAGTTGGC
TGAACGAATTTAGCGTGCTGTGTAATCGTGCGATGAAGCTGGCGTTCCGC
GAACGCGCGGCGAATGGCGCTCGCTTGGGACAGGTGATTTTCTTCAGTAT
TCTGTTGGGATTGATCTGGTTGAACAATGGACGAGAAGAGGAGCTTGCGA
AGAGACGGTCTTTGGTTGGTATCTTGTTCTTCATTTCGATTAATCAGGCG
TTTGGTGGAGTGTTTGCGGTGATCTTTGGGTTCCCTCTGGAACGCAGTGT
GGTGACGAGGGAACGAGCGTCAAACATGTATCGCACGAGTTCGTACTACA
TGAGCAAGACGGTGACGGATTTGCCAAAGTCACTGTTCTTCAACACATTG
TTCGCGCTGATTGTTTATTGGATGGTGGGACTGAAACCGACCGCGGGGGC
GTTTTTCATCTTTCTGTTGGTGATCTTCCTGACGACTGTCCTGGCAGAAT
CGCTGTCGATCGCGGTGTCAATTCTGGCTGGCGACGCGCAGACGGCGGCC
GGTATCATCCCCGTGTTCATCATCCTGGCGCTGTTGTTTGGTGGCTTTTT
CATTGGCAGCGAGGACCTGGGCGACTGGATTGCGTGGGCAAAGTATCTGT
CGTTCATTTTCTATTCGTTCAACGCGCTGGGACACAACGAATTCACGGGG
CGGGCCGAGGCGGATCAGATTCTGCCTGACTTCAATGACCTGAGCATTGC
GGAGAACATCCTGGCGCTGTTTGCGCTCATGGTGGGGTTCAGGTTTATTG
GGTACCTGTTCCTCAAGTTTTTACGCGGACCCAAGTTCCTGAAACTGGAG
GGCGAGACGCAGTAG