Gcaud7691.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7691.t1
Unique NameGcaud7691.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length28
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1176_length_12996_cov_3.628826contigNODE_1176_length_12996_cov_3.628826:2785..2981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7691Gcaud7691Gracilaria caudata M_176_S67 malegeneNODE_1176_length_12996_cov_3.628826 2785..2981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7691.t1Gcaud7691.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1176_length_12996_cov_3.628826 2785..2981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7691.t1.CDS1Gcaud7691.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1176_length_12996_cov_3.628826 2785..2794 -
Gcaud7691.t1.CDS2Gcaud7691.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1176_length_12996_cov_3.628826 2909..2981 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7691.t1.exon1Gcaud7691.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1176_length_12996_cov_3.628826 2785..2794 -
Gcaud7691.t1.exon2Gcaud7691.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1176_length_12996_cov_3.628826 2909..2981 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7691.t1.intron1Gcaud7691.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1176_length_12996_cov_3.628826 2795..2908 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7691.t1.start1Gcaud7691.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1176_length_12996_cov_3.628826 2979..2981 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7691.t1 ID=Gcaud7691.t1|Name=Gcaud7691.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=28bp
LVNVFYNSVPVSVIASLYNNLCPSYNKL
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spliced messenger RNA

>Gcaud7691.t1 ID=Gcaud7691.t1|Name=Gcaud7691.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=83bp|location=Sequence derived from alignment at NODE_1176_length_12996_cov_3.628826:2785..2981- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGTAAACGTTTTTTATAACTCCGTGCCTGTTTCAGTCATAGCTTCCCT
ATACAATAATCTCTGCCCTTCTTACAACAAACT
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protein sequence of Gcaud7691.t1

>Gcaud7691.t1 ID=Gcaud7691.t1|Name=Gcaud7691.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=28bp
LVNVFYNSVPVSVIASLYNNLCPSYNKL
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mRNA from alignment at NODE_1176_length_12996_cov_3.628826:2785..2981-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7691.t1 ID=Gcaud7691.t1|Name=Gcaud7691.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=197bp|location=Sequence derived from alignment at NODE_1176_length_12996_cov_3.628826:2785..2981- (Gracilaria caudata M_176_S67 male)
CTGGTAAACGTTTTTTATAACTCCGTGCCTGTTTCAGTCATAGCTTCCCT
ATACAATAATCTCTGCCCTTCTTGTACGTCTTGTTTATTTTCCCCCAGCG
TCATTAATTGCTTGGTCTTCTCATTTTCTCGCCGGTTAAAACCCCCGTCT
TACAAACTCTTGCCACTTTAATCTTCCCCGCCAACAGACAACAAACT
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Coding sequence (CDS) from alignment at NODE_1176_length_12996_cov_3.628826:2785..2981-

>Gcaud7691.t1 ID=Gcaud7691.t1|Name=Gcaud7691.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=83bp|location=Sequence derived from alignment at NODE_1176_length_12996_cov_3.628826:2785..2981- (Gracilaria caudata M_176_S67 male)
CTGGTAAACGTTTTTTATAACTCCGTGCCTGTTTCAGTCATAGCTTCCCT
ATACAATAATCTCTGCCCTTCTTACAACAAACT
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