Gcaud7672.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7672.t1
Unique NameGcaud7672.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_500_length_23599_cov_4.429981contigNODE_500_length_23599_cov_4.429981:5456..6938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703500.1
Preferred nameDCAF11
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K10770,ko:K11801
GOsGO:0000122,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007568,GO:0008021,GO:0008134,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0019219,GO:0019222,GO:0019538,GO:0019867,GO:0019941,GO:0030133,GO:0030163,GO:0030424,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031461,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0036477,GO:0040008,GO:0040014,GO:0040018,GO:0042995,GO:0043005,GO:0043025,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044449,GO:0044456,GO:0044464,GO:0045202,GO:0045892,GO:0045927,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051603,GO:0055120,GO:0060255,GO:0065007,GO:0070013,GO:0070382,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0120025,GO:1901214,GO:1901216,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905802,GO:1905803,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue2.19e-82
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
EC2.1.1.229
DescriptionWD repeat-containing protein
COG categoryB
BRITEko00000,ko01000,ko03016,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7672Gcaud7672Gracilaria caudata M_176_S67 malegeneNODE_500_length_23599_cov_4.429981 5456..6938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7672.t1Gcaud7672.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_500_length_23599_cov_4.429981 5456..6938 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7672.t1.start1Gcaud7672.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_500_length_23599_cov_4.429981 5456..5458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7672.t1.CDS1Gcaud7672.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_500_length_23599_cov_4.429981 5456..6239 +
Gcaud7672.t1.CDS2Gcaud7672.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_500_length_23599_cov_4.429981 6328..6938 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7672.t1.exon1Gcaud7672.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_500_length_23599_cov_4.429981 5456..6239 +
Gcaud7672.t1.exon2Gcaud7672.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_500_length_23599_cov_4.429981 6328..6938 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7672.t1.intron1Gcaud7672.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_500_length_23599_cov_4.429981 6240..6327 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7672.t1.stop1Gcaud7672.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_500_length_23599_cov_4.429981 6936..6938 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7672.t1 ID=Gcaud7672.t1|Name=Gcaud7672.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp
MFIRQLDRLIPYDRLSRRSYQRNIPPTQSPSLIDLEQSISERLRLPSGRS
TVSRYRALDAASKGFHVLPSVMQHAMLPDVKHHVVESQAYRVYGARFVDD
DGNTFVTSSQGSVIQVYSTSMSEHKAAWKRTHTIRARNVRWTVTDFAVSP
DGRWLAYASINSYIYLVDLQKPHLPHIVMNISRSDEEVLNIWSLTWSHDG
TELIAATGSSERHGPGNVVIFDIPSGTSATVIFAHQDDVNSVCYLQRSDD
NMIVSASDDALVKMWDRREARYTAGRKIDRPCSVFVGHQYGLTHVSSKND
GRFLISNGKDQFIKLWDARKCTATDGLDKVVRPPRDITFDYRLNPRPLVR
NSRNFQDDSVATYTGSHETLQTLIRAHFSPIHSTGQKYIYCGSSDGCFAI
YDVLTGEEVEVLRGHRDVVRDVSWHPYAGILTTGSWDGEVALWSTHADPT
RPSDCSAREGAKDF*
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spliced messenger RNA

>Gcaud7672.t1 ID=Gcaud7672.t1|Name=Gcaud7672.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at NODE_500_length_23599_cov_4.429981:5456..6938+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATTCGCCAGCTAGACAGGTTGATTCCATATGACCGTCTATCACG
TCGTTCATATCAACGAAACATTCCCCCAACTCAGTCTCCCTCTCTGATTG
ACCTGGAGCAAAGCATTTCCGAACGACTACGTTTGCCCAGTGGTCGAAGC
ACTGTTTCTCGCTATCGCGCACTGGATGCAGCTTCGAAAGGGTTCCATGT
ATTGCCCTCTGTTATGCAGCATGCTATGCTTCCGGACGTTAAGCATCATG
TCGTCGAGTCGCAGGCATATCGTGTCTACGGTGCTCGTTTTGTTGATGAC
GACGGTAACACCTTCGTAACTAGTAGCCAGGGTTCTGTCATCCAGGTCTA
CTCCACTTCCATGTCAGAGCACAAAGCCGCTTGGAAGCGAACTCATACTA
TTCGTGCTCGAAATGTTCGATGGACTGTGACTGACTTTGCAGTCAGCCCT
GATGGTCGATGGCTAGCGTACGCTTCTATAAACTCATATATATACCTCGT
TGACCTTCAAAAACCTCATCTACCTCATATCGTCATGAACATTTCGAGGA
GTGATGAGGAGGTGCTTAACATATGGAGCCTTACGTGGAGTCATGATGGT
ACCGAGCTTATTGCTGCAACCGGGTCATCTGAAAGACATGGTCCCGGCAA
CGTTGTTATTTTTGACATTCCCTCTGGCACCAGCGCCACAGTCATATTTG
CCCACCAAGATGATGTTAACTCAGTTTGTTATCTTCAACGTAGTGATGAC
AACATGATTGTTTCAGCATCAGACGATGCTCTTGTGAAAATGTGGGATAG
AAGAGAAGCCAGGTACACAGCAGGAAGAAAGATAGATCGTCCATGTTCCG
TCTTCGTTGGACATCAGTACGGACTTACTCACGTTTCCAGCAAGAACGAT
GGACGCTTTCTGATAAGCAACGGAAAAGACCAGTTCATCAAACTATGGGA
CGCTCGAAAATGCACAGCAACAGATGGATTGGACAAGGTAGTTAGACCGC
CTCGTGATATTACTTTTGATTATAGGTTGAATCCACGTCCCTTGGTGCGG
AACTCACGAAACTTTCAAGACGATTCGGTCGCGACGTATACTGGATCTCA
CGAAACGCTTCAAACGTTGATCAGAGCTCATTTCAGCCCGATTCACAGTA
CAGGTCAGAAGTACATTTATTGCGGCTCGAGTGATGGTTGCTTCGCGATA
TATGACGTGTTGACTGGGGAAGAAGTGGAAGTGTTAAGGGGACATCGCGA
CGTTGTGAGAGATGTGTCTTGGCATCCGTACGCAGGGATTCTCACTACAG
GTTCTTGGGATGGAGAAGTTGCGTTGTGGTCGACACATGCAGATCCGACG
CGACCAAGTGACTGCTCGGCGAGAGAAGGTGCCAAGGATTTTTGA
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protein sequence of Gcaud7672.t1

>Gcaud7672.t1 ID=Gcaud7672.t1|Name=Gcaud7672.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=465bp
MFIRQLDRLIPYDRLSRRSYQRNIPPTQSPSLIDLEQSISERLRLPSGRS
TVSRYRALDAASKGFHVLPSVMQHAMLPDVKHHVVESQAYRVYGARFVDD
DGNTFVTSSQGSVIQVYSTSMSEHKAAWKRTHTIRARNVRWTVTDFAVSP
DGRWLAYASINSYIYLVDLQKPHLPHIVMNISRSDEEVLNIWSLTWSHDG
TELIAATGSSERHGPGNVVIFDIPSGTSATVIFAHQDDVNSVCYLQRSDD
NMIVSASDDALVKMWDRREARYTAGRKIDRPCSVFVGHQYGLTHVSSKND
GRFLISNGKDQFIKLWDARKCTATDGLDKVVRPPRDITFDYRLNPRPLVR
NSRNFQDDSVATYTGSHETLQTLIRAHFSPIHSTGQKYIYCGSSDGCFAI
YDVLTGEEVEVLRGHRDVVRDVSWHPYAGILTTGSWDGEVALWSTHADPT
RPSDCSAREGAKDF*
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mRNA from alignment at NODE_500_length_23599_cov_4.429981:5456..6938+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7672.t1 ID=Gcaud7672.t1|Name=Gcaud7672.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1483bp|location=Sequence derived from alignment at NODE_500_length_23599_cov_4.429981:5456..6938+ (Gracilaria caudata M_176_S67 male)
ATGTTCATTCGCCAGCTAGACAGGTTGATTCCATATGACCGTCTATCACG
TCGTTCATATCAACGAAACATTCCCCCAACTCAGTCTCCCTCTCTGATTG
ACCTGGAGCAAAGCATTTCCGAACGACTACGTTTGCCCAGTGGTCGAAGC
ACTGTTTCTCGCTATCGCGCACTGGATGCAGCTTCGAAAGGGTTCCATGT
ATTGCCCTCTGTTATGCAGCATGCTATGCTTCCGGACGTTAAGCATCATG
TCGTCGAGTCGCAGGCATATCGTGTCTACGGTGCTCGTTTTGTTGATGAC
GACGGTAACACCTTCGTAACTAGTAGCCAGGGTTCTGTCATCCAGGTCTA
CTCCACTTCCATGTCAGAGCACAAAGCCGCTTGGAAGCGAACTCATACTA
TTCGTGCTCGAAATGTTCGATGGACTGTGACTGACTTTGCAGTCAGCCCT
GATGGTCGATGGCTAGCGTACGCTTCTATAAACTCATATATATACCTCGT
TGACCTTCAAAAACCTCATCTACCTCATATCGTCATGAACATTTCGAGGA
GTGATGAGGAGGTGCTTAACATATGGAGCCTTACGTGGAGTCATGATGGT
ACCGAGCTTATTGCTGCAACCGGGTCATCTGAAAGACATGGTCCCGGCAA
CGTTGTTATTTTTGACATTCCCTCTGGCACCAGCGCCACAGTCATATTTG
CCCACCAAGATGATGTTAACTCAGTTTGTTATCTTCAACGTAGTGATGAC
AACATGATTGTTTCAGCATCAGACGATGCTCTTGGTATGTTGTCTTCTCT
TTGTCTTTTCCTCGATTTGGTTAGCCTTCTAACTTTTCGCGTTTTGTCTG
TGTTTCTTTAACAATTTTGTAGTGAAAATGTGGGATAGAAGAGAAGCCAG
GTACACAGCAGGAAGAAAGATAGATCGTCCATGTTCCGTCTTCGTTGGAC
ATCAGTACGGACTTACTCACGTTTCCAGCAAGAACGATGGACGCTTTCTG
ATAAGCAACGGAAAAGACCAGTTCATCAAACTATGGGACGCTCGAAAATG
CACAGCAACAGATGGATTGGACAAGGTAGTTAGACCGCCTCGTGATATTA
CTTTTGATTATAGGTTGAATCCACGTCCCTTGGTGCGGAACTCACGAAAC
TTTCAAGACGATTCGGTCGCGACGTATACTGGATCTCACGAAACGCTTCA
AACGTTGATCAGAGCTCATTTCAGCCCGATTCACAGTACAGGTCAGAAGT
ACATTTATTGCGGCTCGAGTGATGGTTGCTTCGCGATATATGACGTGTTG
ACTGGGGAAGAAGTGGAAGTGTTAAGGGGACATCGCGACGTTGTGAGAGA
TGTGTCTTGGCATCCGTACGCAGGGATTCTCACTACAGGTTCTTGGGATG
GAGAAGTTGCGTTGTGGTCGACACATGCAGATCCGACGCGACCAAGTGAC
TGCTCGGCGAGAGAAGGTGCCAAGGATTTTTGA
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Coding sequence (CDS) from alignment at NODE_500_length_23599_cov_4.429981:5456..6938+

>Gcaud7672.t1 ID=Gcaud7672.t1|Name=Gcaud7672.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1395bp|location=Sequence derived from alignment at NODE_500_length_23599_cov_4.429981:5456..6938+ (Gracilaria caudata M_176_S67 male)
ATGTTCATTCGCCAGCTAGACAGGTTGATTCCATATGACCGTCTATCACG
TCGTTCATATCAACGAAACATTCCCCCAACTCAGTCTCCCTCTCTGATTG
ACCTGGAGCAAAGCATTTCCGAACGACTACGTTTGCCCAGTGGTCGAAGC
ACTGTTTCTCGCTATCGCGCACTGGATGCAGCTTCGAAAGGGTTCCATGT
ATTGCCCTCTGTTATGCAGCATGCTATGCTTCCGGACGTTAAGCATCATG
TCGTCGAGTCGCAGGCATATCGTGTCTACGGTGCTCGTTTTGTTGATGAC
GACGGTAACACCTTCGTAACTAGTAGCCAGGGTTCTGTCATCCAGGTCTA
CTCCACTTCCATGTCAGAGCACAAAGCCGCTTGGAAGCGAACTCATACTA
TTCGTGCTCGAAATGTTCGATGGACTGTGACTGACTTTGCAGTCAGCCCT
GATGGTCGATGGCTAGCGTACGCTTCTATAAACTCATATATATACCTCGT
TGACCTTCAAAAACCTCATCTACCTCATATCGTCATGAACATTTCGAGGA
GTGATGAGGAGGTGCTTAACATATGGAGCCTTACGTGGAGTCATGATGGT
ACCGAGCTTATTGCTGCAACCGGGTCATCTGAAAGACATGGTCCCGGCAA
CGTTGTTATTTTTGACATTCCCTCTGGCACCAGCGCCACAGTCATATTTG
CCCACCAAGATGATGTTAACTCAGTTTGTTATCTTCAACGTAGTGATGAC
AACATGATTGTTTCAGCATCAGACGATGCTCTTGTGAAAATGTGGGATAG
AAGAGAAGCCAGGTACACAGCAGGAAGAAAGATAGATCGTCCATGTTCCG
TCTTCGTTGGACATCAGTACGGACTTACTCACGTTTCCAGCAAGAACGAT
GGACGCTTTCTGATAAGCAACGGAAAAGACCAGTTCATCAAACTATGGGA
CGCTCGAAAATGCACAGCAACAGATGGATTGGACAAGGTAGTTAGACCGC
CTCGTGATATTACTTTTGATTATAGGTTGAATCCACGTCCCTTGGTGCGG
AACTCACGAAACTTTCAAGACGATTCGGTCGCGACGTATACTGGATCTCA
CGAAACGCTTCAAACGTTGATCAGAGCTCATTTCAGCCCGATTCACAGTA
CAGGTCAGAAGTACATTTATTGCGGCTCGAGTGATGGTTGCTTCGCGATA
TATGACGTGTTGACTGGGGAAGAAGTGGAAGTGTTAAGGGGACATCGCGA
CGTTGTGAGAGATGTGTCTTGGCATCCGTACGCAGGGATTCTCACTACAG
GTTCTTGGGATGGAGAAGTTGCGTTGTGGTCGACACATGCAGATCCGACG
CGACCAAGTGACTGCTCGGCGAGAGAAGGTGCCAAGGATTTTTGA
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