Gcaud7671.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7671.t1
Unique NameGcaud7671.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length75
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_500_length_23599_cov_4.429981contigNODE_500_length_23599_cov_4.429981:4175..4657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7671Gcaud7671Gracilaria caudata M_176_S67 malegeneNODE_500_length_23599_cov_4.429981 4175..4657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7671.t1Gcaud7671.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_500_length_23599_cov_4.429981 4175..4657 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7671.t1.stop1Gcaud7671.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_500_length_23599_cov_4.429981 4175..4177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7671.t1.CDS1Gcaud7671.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_500_length_23599_cov_4.429981 4175..4240 -
Gcaud7671.t1.CDS2Gcaud7671.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_500_length_23599_cov_4.429981 4335..4397 -
Gcaud7671.t1.CDS3Gcaud7671.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_500_length_23599_cov_4.429981 4562..4657 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7671.t1.exon1Gcaud7671.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_500_length_23599_cov_4.429981 4175..4240 -
Gcaud7671.t1.exon2Gcaud7671.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_500_length_23599_cov_4.429981 4335..4397 -
Gcaud7671.t1.exon3Gcaud7671.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_500_length_23599_cov_4.429981 4562..4657 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7671.t1.intron1Gcaud7671.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_500_length_23599_cov_4.429981 4241..4334 -
Gcaud7671.t1.intron2Gcaud7671.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_500_length_23599_cov_4.429981 4398..4561 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7671.t1.start1Gcaud7671.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_500_length_23599_cov_4.429981 4655..4657 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7671.t1 ID=Gcaud7671.t1|Name=Gcaud7671.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=75bp
LSPDIQLEVNDWSPLTMMVNLTDNITFSLGVLHPRLQDMSILINKTQLFK
TSECCSLTIPYLEWPVVLIPLSLT*
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spliced messenger RNA

>Gcaud7671.t1 ID=Gcaud7671.t1|Name=Gcaud7671.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp|location=Sequence derived from alignment at NODE_500_length_23599_cov_4.429981:4175..4657- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAGCCCTGATATCCAACTGGAGGTCAATGACTGGTCGCCGTTAACGAT
GATGGTGAACCTCACAGATAATATTACGTTCTCTTTAGGTGTCTTGCACC
CCCGCTTGCAAGACATGAGCATACTTATCAACAAAACTCAATTGTTTAAG
ACTAGTGAGTGCTGCAGTTTAACCATACCATATTTGGAATGGCCGGTTGT
GCTAATTCCGCTGTCCTTAACTTAA
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protein sequence of Gcaud7671.t1

>Gcaud7671.t1 ID=Gcaud7671.t1|Name=Gcaud7671.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=75bp
LSPDIQLEVNDWSPLTMMVNLTDNITFSLGVLHPRLQDMSILINKTQLFK
TSECCSLTIPYLEWPVVLIPLSLT*
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mRNA from alignment at NODE_500_length_23599_cov_4.429981:4175..4657-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7671.t1 ID=Gcaud7671.t1|Name=Gcaud7671.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_500_length_23599_cov_4.429981:4175..4657- (Gracilaria caudata M_176_S67 male)
CTGAGCCCTGATATCCAACTGGAGGTCAATGACTGGTCGCCGTTAACGAT
GATGGTGAACCTCACAGATAATATTACGTTCTCTTTAGGTGTCTTGGTAC
GGGGCAACAAATTTATTCAAACTCTTTCTACCATATGATAATTTCATCGT
TGCTGCACATGATGTGATCGGAACCGATCGGCTCTGCAACGCCTTGCCTT
CGTTCACTAACACAACAATCTCATGTCCGTGTTGACCCATTCGATTTCGT
ATCAAGCAAGCACCCCCGCTTGCAAGACATGAGCATACTTATCAACAAAA
CTCAATTGTTTAAGACTAGTGAGGTGAGCGACATGTACAAGGGTATGCAG
TTTCACAATTTTGTGCACTGACGAATAATTCCTTATTTCCTGTACGTTGG
CGATTGTACCGTACAAGTGCTGCAGTTTAACCATACCATATTTGGAATGG
CCGGTTGTGCTAATTCCGCTGTCCTTAACTTAA
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Coding sequence (CDS) from alignment at NODE_500_length_23599_cov_4.429981:4175..4657-

>Gcaud7671.t1 ID=Gcaud7671.t1|Name=Gcaud7671.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=225bp|location=Sequence derived from alignment at NODE_500_length_23599_cov_4.429981:4175..4657- (Gracilaria caudata M_176_S67 male)
CTGAGCCCTGATATCCAACTGGAGGTCAATGACTGGTCGCCGTTAACGAT
GATGGTGAACCTCACAGATAATATTACGTTCTCTTTAGGTGTCTTGCACC
CCCGCTTGCAAGACATGAGCATACTTATCAACAAAACTCAATTGTTTAAG
ACTAGTGAGTGCTGCAGTTTAACCATACCATATTTGGAATGGCCGGTTGT
GCTAATTCCGCTGTCCTTAACTTAA
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