|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud767.t1.stop1 | Gcaud767.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_4314_length_2378_cov_5.257105 1180..1182 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud767.t1.start1 | Gcaud767.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_4314_length_2378_cov_5.257105 2110..2112 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud767.t1 ID=Gcaud767.t1|Name=Gcaud767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=311bp
MKSVRQKLSEISADCQKFKLPIRRVTNAKPTGVGVDETLSMAVAIHIGRE
TKMNYEQKDLSHDVWPNVRAWKMLRTCPKWECDSLASTVDANTTISEAGT
LENKSTVLSPSQTCNGEVEVEGNANDTSPKRRAVDGNGVGLPGRSKAKAL
RKEEQLHKTMNDIALAMKKKVEALEERNSISLFQCEDYNLADEEDKRVRT
EYLRMSRLFHLKRLKKRVKNLSGEERIDGEPGHCGCGIGSSSEKKKRRRP
AHEEERGANKQQKITANTANNVLDVSLSAAEKVAVDALVRKGGMEGAIGS
HIENRGADSR* back to topspliced messenger RNA >Gcaud767.t1 ID=Gcaud767.t1|Name=Gcaud767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_4314_length_2378_cov_5.257105:1180..2112- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAAAGCGTACGTCAAAAGCTTTCTGAGATATCTGCAGACTGCCAGAA
GTTTAAACTACCTATCCGGAGGGTGACTAATGCTAAACCGACAGGTGTCG
GCGTTGATGAAACTCTTTCAATGGCTGTTGCCATTCACATCGGTCGCGAA
ACGAAGATGAACTACGAGCAGAAGGACTTGAGTCATGATGTATGGCCAAA
TGTTCGTGCGTGGAAGATGTTGCGGACTTGTCCCAAGTGGGAGTGTGACT
CACTTGCTTCTACTGTTGACGCCAATACCACCATTTCAGAGGCCGGCACG
CTGGAGAACAAATCTACTGTTCTTTCACCGTCACAGACATGCAATGGAGA
GGTAGAGGTGGAAGGAAATGCAAATGATACCTCTCCCAAACGTAGAGCAG
TAGATGGAAACGGTGTAGGTCTTCCAGGGCGTTCCAAGGCCAAAGCGTTG
CGTAAAGAAGAACAGCTTCATAAAACTATGAACGATATTGCGTTGGCAAT
GAAGAAGAAGGTTGAGGCGCTCGAGGAGAGAAATTCTATTTCGTTGTTTC
AGTGCGAGGATTACAATCTTGCTGATGAGGAAGACAAACGCGTTCGCACG
GAGTACTTGCGCATGTCCCGTCTGTTCCACTTGAAGAGATTGAAGAAACG
TGTTAAGAACCTTTCTGGGGAAGAGCGAATCGATGGCGAGCCTGGGCACT
GCGGGTGTGGCATTGGTTCTTCTTCAGAGAAGAAGAAGAGGCGCAGACCG
GCGCACGAAGAAGAGCGTGGGGCCAATAAGCAGCAGAAGATTACTGCAAA
CACTGCAAACAATGTGTTGGACGTCTCTTTATCTGCTGCGGAGAAGGTTG
CAGTCGATGCGCTCGTGCGCAAGGGTGGCATGGAAGGAGCAATCGGTTCT
CATATCGAAAATCGCGGCGCGGACTCGCGTTAA back to topprotein sequence of Gcaud767.t1 >Gcaud767.t1 ID=Gcaud767.t1|Name=Gcaud767.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=311bp
MKSVRQKLSEISADCQKFKLPIRRVTNAKPTGVGVDETLSMAVAIHIGRE
TKMNYEQKDLSHDVWPNVRAWKMLRTCPKWECDSLASTVDANTTISEAGT
LENKSTVLSPSQTCNGEVEVEGNANDTSPKRRAVDGNGVGLPGRSKAKAL
RKEEQLHKTMNDIALAMKKKVEALEERNSISLFQCEDYNLADEEDKRVRT
EYLRMSRLFHLKRLKKRVKNLSGEERIDGEPGHCGCGIGSSSEKKKRRRP
AHEEERGANKQQKITANTANNVLDVSLSAAEKVAVDALVRKGGMEGAIGS
HIENRGADSR* back to topmRNA from alignment at NODE_4314_length_2378_cov_5.257105:1180..2112- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud767.t1 ID=Gcaud767.t1|Name=Gcaud767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_4314_length_2378_cov_5.257105:1180..2112- (Gracilaria caudata M_176_S67 male)
ATGAAAAGCGTACGTCAAAAGCTTTCTGAGATATCTGCAGACTGCCAGAA
GTTTAAACTACCTATCCGGAGGGTGACTAATGCTAAACCGACAGGTGTCG
GCGTTGATGAAACTCTTTCAATGGCTGTTGCCATTCACATCGGTCGCGAA
ACGAAGATGAACTACGAGCAGAAGGACTTGAGTCATGATGTATGGCCAAA
TGTTCGTGCGTGGAAGATGTTGCGGACTTGTCCCAAGTGGGAGTGTGACT
CACTTGCTTCTACTGTTGACGCCAATACCACCATTTCAGAGGCCGGCACG
CTGGAGAACAAATCTACTGTTCTTTCACCGTCACAGACATGCAATGGAGA
GGTAGAGGTGGAAGGAAATGCAAATGATACCTCTCCCAAACGTAGAGCAG
TAGATGGAAACGGTGTAGGTCTTCCAGGGCGTTCCAAGGCCAAAGCGTTG
CGTAAAGAAGAACAGCTTCATAAAACTATGAACGATATTGCGTTGGCAAT
GAAGAAGAAGGTTGAGGCGCTCGAGGAGAGAAATTCTATTTCGTTGTTTC
AGTGCGAGGATTACAATCTTGCTGATGAGGAAGACAAACGCGTTCGCACG
GAGTACTTGCGCATGTCCCGTCTGTTCCACTTGAAGAGATTGAAGAAACG
TGTTAAGAACCTTTCTGGGGAAGAGCGAATCGATGGCGAGCCTGGGCACT
GCGGGTGTGGCATTGGTTCTTCTTCAGAGAAGAAGAAGAGGCGCAGACCG
GCGCACGAAGAAGAGCGTGGGGCCAATAAGCAGCAGAAGATTACTGCAAA
CACTGCAAACAATGTGTTGGACGTCTCTTTATCTGCTGCGGAGAAGGTTG
CAGTCGATGCGCTCGTGCGCAAGGGTGGCATGGAAGGAGCAATCGGTTCT
CATATCGAAAATCGCGGCGCGGACTCGCGTTAA back to topCoding sequence (CDS) from alignment at NODE_4314_length_2378_cov_5.257105:1180..2112- >Gcaud767.t1 ID=Gcaud767.t1|Name=Gcaud767.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=933bp|location=Sequence derived from alignment at NODE_4314_length_2378_cov_5.257105:1180..2112- (Gracilaria caudata M_176_S67 male)
ATGAAAAGCGTACGTCAAAAGCTTTCTGAGATATCTGCAGACTGCCAGAA
GTTTAAACTACCTATCCGGAGGGTGACTAATGCTAAACCGACAGGTGTCG
GCGTTGATGAAACTCTTTCAATGGCTGTTGCCATTCACATCGGTCGCGAA
ACGAAGATGAACTACGAGCAGAAGGACTTGAGTCATGATGTATGGCCAAA
TGTTCGTGCGTGGAAGATGTTGCGGACTTGTCCCAAGTGGGAGTGTGACT
CACTTGCTTCTACTGTTGACGCCAATACCACCATTTCAGAGGCCGGCACG
CTGGAGAACAAATCTACTGTTCTTTCACCGTCACAGACATGCAATGGAGA
GGTAGAGGTGGAAGGAAATGCAAATGATACCTCTCCCAAACGTAGAGCAG
TAGATGGAAACGGTGTAGGTCTTCCAGGGCGTTCCAAGGCCAAAGCGTTG
CGTAAAGAAGAACAGCTTCATAAAACTATGAACGATATTGCGTTGGCAAT
GAAGAAGAAGGTTGAGGCGCTCGAGGAGAGAAATTCTATTTCGTTGTTTC
AGTGCGAGGATTACAATCTTGCTGATGAGGAAGACAAACGCGTTCGCACG
GAGTACTTGCGCATGTCCCGTCTGTTCCACTTGAAGAGATTGAAGAAACG
TGTTAAGAACCTTTCTGGGGAAGAGCGAATCGATGGCGAGCCTGGGCACT
GCGGGTGTGGCATTGGTTCTTCTTCAGAGAAGAAGAAGAGGCGCAGACCG
GCGCACGAAGAAGAGCGTGGGGCCAATAAGCAGCAGAAGATTACTGCAAA
CACTGCAAACAATGTGTTGGACGTCTCTTTATCTGCTGCGGAGAAGGTTG
CAGTCGATGCGCTCGTGCGCAAGGGTGGCATGGAAGGAGCAATCGGTTCT
CATATCGAAAATCGCGGCGCGGACTCGCGTTAA back to top
|