Gcaud7665.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7665.t1
Unique NameGcaud7665.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_273_length_32656_cov_4.516229contigNODE_273_length_32656_cov_4.516229:28172..28768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7665Gcaud7665Gracilaria caudata M_176_S67 malegeneNODE_273_length_32656_cov_4.516229 28172..28768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7665.t1Gcaud7665.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_273_length_32656_cov_4.516229 28172..28768 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7665.t1.start1Gcaud7665.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_273_length_32656_cov_4.516229 28172..28174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7665.t1.CDS1Gcaud7665.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_273_length_32656_cov_4.516229 28172..28189 +
Gcaud7665.t1.CDS2Gcaud7665.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_273_length_32656_cov_4.516229 28302..28355 +
Gcaud7665.t1.CDS3Gcaud7665.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_273_length_32656_cov_4.516229 28439..28768 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7665.t1.exon1Gcaud7665.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_273_length_32656_cov_4.516229 28172..28189 +
Gcaud7665.t1.exon2Gcaud7665.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_273_length_32656_cov_4.516229 28302..28355 +
Gcaud7665.t1.exon3Gcaud7665.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_273_length_32656_cov_4.516229 28439..28768 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7665.t1.intron1Gcaud7665.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_273_length_32656_cov_4.516229 28190..28301 +
Gcaud7665.t1.intron2Gcaud7665.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_273_length_32656_cov_4.516229 28356..28438 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7665.t1.stop1Gcaud7665.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_273_length_32656_cov_4.516229 28766..28768 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7665.t1 ID=Gcaud7665.t1|Name=Gcaud7665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=134bp
MLNSPQSAFQKLANVFPVSNMIPSESFYKKFPDSERGPLKDRASFLGPDF
GDGTRDPRDDTTFQDLTKMLKSPTKGNKNAFSKTPRAKVGGDGPPDDVAP
VQEGEDTSASASNRNDKKKGIFWMLLSKYLNKR*
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spliced messenger RNA

>Gcaud7665.t1 ID=Gcaud7665.t1|Name=Gcaud7665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=402bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:28172..28768+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAACTCTCCACAATCTGCTTTTCAAAAACTGGCGAACGTTTTCCC
GGTGTCGAACATGATACCCTCTGAATCGTTCTACAAAAAGTTTCCGGATA
GTGAGCGCGGGCCTTTAAAGGATAGGGCCTCGTTTCTTGGGCCTGACTTT
GGCGATGGAACCAGAGACCCCCGAGATGATACTACTTTTCAAGATCTTAC
CAAGATGTTGAAGTCTCCCACTAAAGGGAACAAGAATGCTTTTTCTAAAA
CGCCAAGGGCGAAAGTAGGAGGCGACGGGCCTCCTGATGATGTAGCGCCG
GTTCAGGAAGGAGAAGACACGTCAGCGTCAGCGTCAAATCGTAACGATAA
GAAGAAAGGGATATTTTGGATGCTATTGTCGAAGTACCTCAACAAGAGAT
AA
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protein sequence of Gcaud7665.t1

>Gcaud7665.t1 ID=Gcaud7665.t1|Name=Gcaud7665.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=134bp
MLNSPQSAFQKLANVFPVSNMIPSESFYKKFPDSERGPLKDRASFLGPDF
GDGTRDPRDDTTFQDLTKMLKSPTKGNKNAFSKTPRAKVGGDGPPDDVAP
VQEGEDTSASASNRNDKKKGIFWMLLSKYLNKR*
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mRNA from alignment at NODE_273_length_32656_cov_4.516229:28172..28768+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7665.t1 ID=Gcaud7665.t1|Name=Gcaud7665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:28172..28768+ (Gracilaria caudata M_176_S67 male)
ATGTTGAACTCTCCACAAGTACGTGCGCGATCACACTTGAAAGCAAGCGT
GCCCATATTCCGCATTCAACCGAGTGCGTATATGCTTTAAGTCATTCCGC
CCCAAGCAACTTACCTCTCGGTCACAAAAGTCTGCTTTTCAAAAACTGGC
GAACGTTTTCCCGGTGTCGAACATGATACCCTCTGTTCGTCATTGAGTAT
TCAAAAGAGTTCGAACGAGTTGGCCTAAACTTGTTGAGCGCGTGTTGAAG
TTTTTCGCTAAATGAAGGAATCGTTCTACAAAAAGTTTCCGGATAGTGAG
CGCGGGCCTTTAAAGGATAGGGCCTCGTTTCTTGGGCCTGACTTTGGCGA
TGGAACCAGAGACCCCCGAGATGATACTACTTTTCAAGATCTTACCAAGA
TGTTGAAGTCTCCCACTAAAGGGAACAAGAATGCTTTTTCTAAAACGCCA
AGGGCGAAAGTAGGAGGCGACGGGCCTCCTGATGATGTAGCGCCGGTTCA
GGAAGGAGAAGACACGTCAGCGTCAGCGTCAAATCGTAACGATAAGAAGA
AAGGGATATTTTGGATGCTATTGTCGAAGTACCTCAACAAGAGATAA
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Coding sequence (CDS) from alignment at NODE_273_length_32656_cov_4.516229:28172..28768+

>Gcaud7665.t1 ID=Gcaud7665.t1|Name=Gcaud7665.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=402bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:28172..28768+ (Gracilaria caudata M_176_S67 male)
ATGTTGAACTCTCCACAATCTGCTTTTCAAAAACTGGCGAACGTTTTCCC
GGTGTCGAACATGATACCCTCTGAATCGTTCTACAAAAAGTTTCCGGATA
GTGAGCGCGGGCCTTTAAAGGATAGGGCCTCGTTTCTTGGGCCTGACTTT
GGCGATGGAACCAGAGACCCCCGAGATGATACTACTTTTCAAGATCTTAC
CAAGATGTTGAAGTCTCCCACTAAAGGGAACAAGAATGCTTTTTCTAAAA
CGCCAAGGGCGAAAGTAGGAGGCGACGGGCCTCCTGATGATGTAGCGCCG
GTTCAGGAAGGAGAAGACACGTCAGCGTCAGCGTCAAATCGTAACGATAA
GAAGAAAGGGATATTTTGGATGCTATTGTCGAAGTACCTCAACAAGAGAT
AA
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