Gcaud7663.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7663.t1
Unique NameGcaud7663.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_273_length_32656_cov_4.516229contigNODE_273_length_32656_cov_4.516229:25107..25892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123248.KB893321_gene561
Preferred namemenG
PFAMsUbie_methyltran
Max annot lvl976|Bacteroidetes
KEGG rclassRC00003,RC01253,RC01662
KEGG koko:K03183
KEGG ReactionR04990,R04993,R06859,R08774,R09736
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00116,M00117
Evalue7.59e-47
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,4NEDR@976|Bacteroidetes,1IQ48@117747|Sphingobacteriia
EC2.1.1.163,2.1.1.201
DescriptionMethyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7663Gcaud7663Gracilaria caudata M_176_S67 malegeneNODE_273_length_32656_cov_4.516229 25107..25892 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7663.t1.stop1Gcaud7663.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_273_length_32656_cov_4.516229 25107..25109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7663.t1.CDS1Gcaud7663.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_273_length_32656_cov_4.516229 25107..25892 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7663.t1.exon1Gcaud7663.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_273_length_32656_cov_4.516229 25107..25892 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7663.t1.start1Gcaud7663.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_273_length_32656_cov_4.516229 25890..25892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7663.t1Gcaud7663.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_273_length_32656_cov_4.516229 25107..25892 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7663.t1 ID=Gcaud7663.t1|Name=Gcaud7663.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=262bp
MYAFRTILVATMAVMVCGAFCEETGKESCVVPGSGEFFDQIAARYDVLNQ
VISLGFHGSWRNSAIRKILPAASVLDVSTGTGDLALSLATNRSIQVVGVD
PSVEMLKIARDKANRFANSIGDLKLVEGVAEELPFESESFDAVAVAFGVR
NFQNTQKGLAEMGRVLKPDGRWVILEAGFTNGSSFLEEAHRVFVTRIMPR
VAGFFSGNRDAYEYLSESMQKFSGIEELIKMLEEAGLHVETHERLTPFGM
GPFLYSGTKLV*
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spliced messenger RNA

>Gcaud7663.t1 ID=Gcaud7663.t1|Name=Gcaud7663.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=786bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:25107..25892- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGCTTTTCGAACCATTTTAGTTGCGACGATGGCCGTCATGGTGTG
CGGTGCATTCTGTGAAGAAACAGGAAAAGAATCTTGCGTAGTCCCAGGAT
CAGGTGAGTTCTTCGATCAGATTGCAGCTCGATACGATGTTCTAAATCAA
GTCATCTCTTTGGGATTTCATGGAAGCTGGCGAAACTCAGCAATTCGAAA
GATTCTTCCGGCGGCCTCTGTGTTAGATGTCAGCACAGGAACGGGAGATT
TAGCACTCTCCTTGGCCACGAATCGGTCCATTCAAGTCGTAGGCGTTGAT
CCTTCAGTGGAGATGCTCAAGATTGCACGCGACAAGGCGAATCGCTTCGC
CAATAGCATCGGTGACTTAAAACTTGTGGAGGGCGTTGCAGAAGAATTGC
CGTTTGAGAGCGAAAGTTTTGATGCGGTAGCCGTTGCGTTTGGAGTTCGA
AACTTTCAAAATACTCAGAAAGGCCTTGCAGAAATGGGAAGAGTACTTAA
GCCGGACGGAAGGTGGGTGATATTGGAAGCGGGTTTCACAAATGGGAGCA
GTTTCCTTGAAGAAGCTCATCGCGTATTCGTCACTAGGATTATGCCCAGA
GTCGCCGGTTTCTTTTCCGGTAATCGCGATGCCTACGAATATCTGAGCGA
ATCGATGCAAAAATTTTCGGGGATTGAGGAGCTTATCAAGATGCTTGAAG
AAGCTGGACTGCACGTCGAAACGCATGAGCGCCTAACGCCTTTTGGAATG
GGACCATTTCTCTACAGTGGCACAAAGTTGGTGTAG
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protein sequence of Gcaud7663.t1

>Gcaud7663.t1 ID=Gcaud7663.t1|Name=Gcaud7663.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=262bp
MYAFRTILVATMAVMVCGAFCEETGKESCVVPGSGEFFDQIAARYDVLNQ
VISLGFHGSWRNSAIRKILPAASVLDVSTGTGDLALSLATNRSIQVVGVD
PSVEMLKIARDKANRFANSIGDLKLVEGVAEELPFESESFDAVAVAFGVR
NFQNTQKGLAEMGRVLKPDGRWVILEAGFTNGSSFLEEAHRVFVTRIMPR
VAGFFSGNRDAYEYLSESMQKFSGIEELIKMLEEAGLHVETHERLTPFGM
GPFLYSGTKLV*
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mRNA from alignment at NODE_273_length_32656_cov_4.516229:25107..25892-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7663.t1 ID=Gcaud7663.t1|Name=Gcaud7663.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=786bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:25107..25892- (Gracilaria caudata M_176_S67 male)
ATGTATGCTTTTCGAACCATTTTAGTTGCGACGATGGCCGTCATGGTGTG
CGGTGCATTCTGTGAAGAAACAGGAAAAGAATCTTGCGTAGTCCCAGGAT
CAGGTGAGTTCTTCGATCAGATTGCAGCTCGATACGATGTTCTAAATCAA
GTCATCTCTTTGGGATTTCATGGAAGCTGGCGAAACTCAGCAATTCGAAA
GATTCTTCCGGCGGCCTCTGTGTTAGATGTCAGCACAGGAACGGGAGATT
TAGCACTCTCCTTGGCCACGAATCGGTCCATTCAAGTCGTAGGCGTTGAT
CCTTCAGTGGAGATGCTCAAGATTGCACGCGACAAGGCGAATCGCTTCGC
CAATAGCATCGGTGACTTAAAACTTGTGGAGGGCGTTGCAGAAGAATTGC
CGTTTGAGAGCGAAAGTTTTGATGCGGTAGCCGTTGCGTTTGGAGTTCGA
AACTTTCAAAATACTCAGAAAGGCCTTGCAGAAATGGGAAGAGTACTTAA
GCCGGACGGAAGGTGGGTGATATTGGAAGCGGGTTTCACAAATGGGAGCA
GTTTCCTTGAAGAAGCTCATCGCGTATTCGTCACTAGGATTATGCCCAGA
GTCGCCGGTTTCTTTTCCGGTAATCGCGATGCCTACGAATATCTGAGCGA
ATCGATGCAAAAATTTTCGGGGATTGAGGAGCTTATCAAGATGCTTGAAG
AAGCTGGACTGCACGTCGAAACGCATGAGCGCCTAACGCCTTTTGGAATG
GGACCATTTCTCTACAGTGGCACAAAGTTGGTGTAG
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Coding sequence (CDS) from alignment at NODE_273_length_32656_cov_4.516229:25107..25892-

>Gcaud7663.t1 ID=Gcaud7663.t1|Name=Gcaud7663.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=786bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:25107..25892- (Gracilaria caudata M_176_S67 male)
ATGTATGCTTTTCGAACCATTTTAGTTGCGACGATGGCCGTCATGGTGTG
CGGTGCATTCTGTGAAGAAACAGGAAAAGAATCTTGCGTAGTCCCAGGAT
CAGGTGAGTTCTTCGATCAGATTGCAGCTCGATACGATGTTCTAAATCAA
GTCATCTCTTTGGGATTTCATGGAAGCTGGCGAAACTCAGCAATTCGAAA
GATTCTTCCGGCGGCCTCTGTGTTAGATGTCAGCACAGGAACGGGAGATT
TAGCACTCTCCTTGGCCACGAATCGGTCCATTCAAGTCGTAGGCGTTGAT
CCTTCAGTGGAGATGCTCAAGATTGCACGCGACAAGGCGAATCGCTTCGC
CAATAGCATCGGTGACTTAAAACTTGTGGAGGGCGTTGCAGAAGAATTGC
CGTTTGAGAGCGAAAGTTTTGATGCGGTAGCCGTTGCGTTTGGAGTTCGA
AACTTTCAAAATACTCAGAAAGGCCTTGCAGAAATGGGAAGAGTACTTAA
GCCGGACGGAAGGTGGGTGATATTGGAAGCGGGTTTCACAAATGGGAGCA
GTTTCCTTGAAGAAGCTCATCGCGTATTCGTCACTAGGATTATGCCCAGA
GTCGCCGGTTTCTTTTCCGGTAATCGCGATGCCTACGAATATCTGAGCGA
ATCGATGCAAAAATTTTCGGGGATTGAGGAGCTTATCAAGATGCTTGAAG
AAGCTGGACTGCACGTCGAAACGCATGAGCGCCTAACGCCTTTTGGAATG
GGACCATTTCTCTACAGTGGCACAAAGTTGGTGTAG
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