Gcaud7660.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7660.t1
Unique Name	Gcaud7660.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	528

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_273_length_32656_cov_4.516229	contig	NODE_273_length_32656_cov_4.516229:19538..21121 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	111781.Lepto7376_2196
PFAMs	FIST,FIST_C
Max annot lvl	1117\|Cyanobacteria
Evalue	1.88e-57
EggNOG OGs	COG4398@1\|root,COG4398@2\|Bacteria,1G0TB@1117\|Cyanobacteria,1H74Y@1150\|Oscillatoriales
Description	PFAM FIST C domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7660	Gcaud7660	Gracilaria caudata M_176_S67 male	gene	NODE_273_length_32656_cov_4.516229 19538..21121 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7660.t1.start1	Gcaud7660.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_273_length_32656_cov_4.516229 19538..19540 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7660.t1.CDS1	Gcaud7660.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_273_length_32656_cov_4.516229 19538..21121 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7660.t1.exon1	Gcaud7660.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_273_length_32656_cov_4.516229 19538..21121 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7660.t1.stop1	Gcaud7660.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_273_length_32656_cov_4.516229 21119..21121 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7660.t1	Gcaud7660.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_273_length_32656_cov_4.516229 19538..21121 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_273_length_32656_cov_4.516229:19538..21121+
coding sequence from alignment at NODE_273_length_32656_cov_4.516229:19538..21121+

mRNA sequence

>Gcaud7660.t1 ID=Gcaud7660.t1|Name=Gcaud7660.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp
MSLAFVPHSLTLTRVRCARPSLRCRRPRRVVCAPRRQRPLCTAEPNPMPS
EAEAPQLSFSTAASSAPTLSSALTEAVSRALSKLGPGGPPNLAFVFVSVR
YSLSNIGPSGRDSLDLVVPRLRALVPELKAVLGCTSDGVIGSGPLSDVVE
LQNVPSVSITLGRLPKVKITPFHVMPDDLPNPDARQSEWRRLVSNPDDAN
NPPAFIVLSDPSFAERGELDTFLSGVEFAYPGSCVVGSLASAAAAFARGH
MFCTLPRDVLSPHSSSLRDSGLVGIALTGDIELDCLVSAGCRSIGPIYEV
RKVSNGIVREMELVGRPSTLMSAMSHLRSIISYATSQEKVLMQDQLHVGI
AIESVANSDSDSEAYLIRHVIGVDMDGGGISVAHNVRPGQRIRFFLQEPE
AAEKALDTNIQRYKRAELANSLVGYSNPPFGAMVFVDNGRGRALFRERCI
ETKNLTEFATGVPISGCFAGGQIGPCKSGGGDKNMPSVIHHAANLIAFVR
RRSGISPSEPVDSPSTSAADLDEGPER*

spliced messenger RNA

>Gcaud7660.t1 ID=Gcaud7660.t1|Name=Gcaud7660.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:19538..21121+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTAGCTTTCGTTCCGCATTCCCTCACTCTCACTCGCGTGCGGTG
CGCGCGCCCCTCTTTGCGATGCCGTCGGCCGCGGAGAGTAGTCTGTGCCC
CCCGCCGCCAGCGCCCGCTATGTACCGCCGAGCCGAATCCGATGCCATCG
GAGGCAGAAGCACCGCAACTCTCGTTCTCCACCGCAGCCTCGTCCGCCCC
CACGTTGAGTTCCGCCCTGACTGAAGCCGTATCCCGCGCGCTTTCAAAGC
TTGGCCCAGGAGGGCCTCCTAATCTCGCCTTTGTGTTTGTGTCGGTGCGG
TATAGCCTTTCAAACATCGGTCCATCCGGTCGCGACTCGCTCGACTTGGT
AGTTCCGCGTCTTCGCGCTTTGGTTCCAGAACTGAAGGCAGTTCTTGGAT
GCACTTCCGACGGGGTCATTGGCAGTGGTCCCCTGAGCGATGTCGTTGAG
CTACAAAACGTACCTTCAGTGTCCATTACCCTTGGCCGTCTTCCCAAAGT
GAAAATAACGCCATTCCACGTGATGCCGGACGATTTGCCAAACCCGGACG
CCAGACAAAGCGAATGGAGGCGCCTAGTTTCAAATCCAGACGACGCAAAC
AACCCCCCAGCATTTATTGTGCTCTCTGATCCGAGCTTCGCTGAGAGAGG
GGAGCTTGATACTTTTCTTTCTGGCGTGGAATTTGCGTATCCTGGAAGTT
GCGTAGTTGGCTCTCTAGCCTCTGCAGCAGCGGCTTTTGCCCGAGGACAT
ATGTTTTGCACGTTGCCTAGAGATGTGCTTTCACCACATTCTTCGTCTTT
GAGAGACTCCGGCTTGGTAGGAATCGCATTAACGGGTGATATTGAGCTGG
ACTGTCTTGTTTCAGCTGGCTGTCGGTCCATAGGACCTATATATGAAGTT
CGTAAAGTTTCTAATGGAATTGTCAGGGAAATGGAGTTGGTTGGACGTCC
GTCTACCCTCATGTCGGCAATGTCGCATTTGAGGAGCATAATATCTTACG
CAACATCACAGGAAAAGGTGCTAATGCAAGATCAACTACATGTTGGCATC
GCTATCGAGTCTGTTGCTAATTCAGACTCCGACTCTGAAGCTTATCTTAT
CCGCCATGTGATAGGCGTTGATATGGATGGAGGTGGTATTTCAGTTGCCC
ACAACGTCCGTCCCGGTCAGCGCATTCGCTTCTTTTTGCAAGAACCGGAA
GCTGCAGAAAAGGCGCTTGACACCAACATCCAAAGATATAAACGAGCGGA
ACTAGCCAATTCTTTGGTTGGGTACAGCAACCCGCCTTTTGGAGCCATGG
TCTTCGTGGACAATGGTCGTGGGCGAGCTCTCTTCCGTGAGCGGTGTATA
GAAACGAAGAACCTGACAGAGTTTGCGACAGGCGTGCCTATAAGCGGTTG
CTTTGCAGGGGGACAGATTGGGCCATGCAAATCCGGCGGAGGTGACAAGA
ATATGCCTTCCGTAATTCATCACGCTGCAAATCTTATCGCTTTTGTTCGA
AGAAGAAGTGGTATTTCACCTTCAGAACCGGTCGACAGCCCCTCTACTTC
GGCTGCGGATCTCGACGAAGGTCCGGAGAGGTAA

protein sequence of Gcaud7660.t1

>Gcaud7660.t1 ID=Gcaud7660.t1|Name=Gcaud7660.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=528bp
MSLAFVPHSLTLTRVRCARPSLRCRRPRRVVCAPRRQRPLCTAEPNPMPS
EAEAPQLSFSTAASSAPTLSSALTEAVSRALSKLGPGGPPNLAFVFVSVR
YSLSNIGPSGRDSLDLVVPRLRALVPELKAVLGCTSDGVIGSGPLSDVVE
LQNVPSVSITLGRLPKVKITPFHVMPDDLPNPDARQSEWRRLVSNPDDAN
NPPAFIVLSDPSFAERGELDTFLSGVEFAYPGSCVVGSLASAAAAFARGH
MFCTLPRDVLSPHSSSLRDSGLVGIALTGDIELDCLVSAGCRSIGPIYEV
RKVSNGIVREMELVGRPSTLMSAMSHLRSIISYATSQEKVLMQDQLHVGI
AIESVANSDSDSEAYLIRHVIGVDMDGGGISVAHNVRPGQRIRFFLQEPE
AAEKALDTNIQRYKRAELANSLVGYSNPPFGAMVFVDNGRGRALFRERCI
ETKNLTEFATGVPISGCFAGGQIGPCKSGGGDKNMPSVIHHAANLIAFVR
RRSGISPSEPVDSPSTSAADLDEGPER*

mRNA from alignment at NODE_273_length_32656_cov_4.516229:19538..21121+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7660.t1 ID=Gcaud7660.t1|Name=Gcaud7660.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:19538..21121+ (Gracilaria caudata M_176_S67 male)
ATGTCCTTAGCTTTCGTTCCGCATTCCCTCACTCTCACTCGCGTGCGGTG
CGCGCGCCCCTCTTTGCGATGCCGTCGGCCGCGGAGAGTAGTCTGTGCCC
CCCGCCGCCAGCGCCCGCTATGTACCGCCGAGCCGAATCCGATGCCATCG
GAGGCAGAAGCACCGCAACTCTCGTTCTCCACCGCAGCCTCGTCCGCCCC
CACGTTGAGTTCCGCCCTGACTGAAGCCGTATCCCGCGCGCTTTCAAAGC
TTGGCCCAGGAGGGCCTCCTAATCTCGCCTTTGTGTTTGTGTCGGTGCGG
TATAGCCTTTCAAACATCGGTCCATCCGGTCGCGACTCGCTCGACTTGGT
AGTTCCGCGTCTTCGCGCTTTGGTTCCAGAACTGAAGGCAGTTCTTGGAT
GCACTTCCGACGGGGTCATTGGCAGTGGTCCCCTGAGCGATGTCGTTGAG
CTACAAAACGTACCTTCAGTGTCCATTACCCTTGGCCGTCTTCCCAAAGT
GAAAATAACGCCATTCCACGTGATGCCGGACGATTTGCCAAACCCGGACG
CCAGACAAAGCGAATGGAGGCGCCTAGTTTCAAATCCAGACGACGCAAAC
AACCCCCCAGCATTTATTGTGCTCTCTGATCCGAGCTTCGCTGAGAGAGG
GGAGCTTGATACTTTTCTTTCTGGCGTGGAATTTGCGTATCCTGGAAGTT
GCGTAGTTGGCTCTCTAGCCTCTGCAGCAGCGGCTTTTGCCCGAGGACAT
ATGTTTTGCACGTTGCCTAGAGATGTGCTTTCACCACATTCTTCGTCTTT
GAGAGACTCCGGCTTGGTAGGAATCGCATTAACGGGTGATATTGAGCTGG
ACTGTCTTGTTTCAGCTGGCTGTCGGTCCATAGGACCTATATATGAAGTT
CGTAAAGTTTCTAATGGAATTGTCAGGGAAATGGAGTTGGTTGGACGTCC
GTCTACCCTCATGTCGGCAATGTCGCATTTGAGGAGCATAATATCTTACG
CAACATCACAGGAAAAGGTGCTAATGCAAGATCAACTACATGTTGGCATC
GCTATCGAGTCTGTTGCTAATTCAGACTCCGACTCTGAAGCTTATCTTAT
CCGCCATGTGATAGGCGTTGATATGGATGGAGGTGGTATTTCAGTTGCCC
ACAACGTCCGTCCCGGTCAGCGCATTCGCTTCTTTTTGCAAGAACCGGAA
GCTGCAGAAAAGGCGCTTGACACCAACATCCAAAGATATAAACGAGCGGA
ACTAGCCAATTCTTTGGTTGGGTACAGCAACCCGCCTTTTGGAGCCATGG
TCTTCGTGGACAATGGTCGTGGGCGAGCTCTCTTCCGTGAGCGGTGTATA
GAAACGAAGAACCTGACAGAGTTTGCGACAGGCGTGCCTATAAGCGGTTG
CTTTGCAGGGGGACAGATTGGGCCATGCAAATCCGGCGGAGGTGACAAGA
ATATGCCTTCCGTAATTCATCACGCTGCAAATCTTATCGCTTTTGTTCGA
AGAAGAAGTGGTATTTCACCTTCAGAACCGGTCGACAGCCCCTCTACTTC
GGCTGCGGATCTCGACGAAGGTCCGGAGAGGTAA

Coding sequence (CDS) from alignment at NODE_273_length_32656_cov_4.516229:19538..21121+

>Gcaud7660.t1 ID=Gcaud7660.t1|Name=Gcaud7660.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1584bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:19538..21121+ (Gracilaria caudata M_176_S67 male)
ATGTCCTTAGCTTTCGTTCCGCATTCCCTCACTCTCACTCGCGTGCGGTG
CGCGCGCCCCTCTTTGCGATGCCGTCGGCCGCGGAGAGTAGTCTGTGCCC
CCCGCCGCCAGCGCCCGCTATGTACCGCCGAGCCGAATCCGATGCCATCG
GAGGCAGAAGCACCGCAACTCTCGTTCTCCACCGCAGCCTCGTCCGCCCC
CACGTTGAGTTCCGCCCTGACTGAAGCCGTATCCCGCGCGCTTTCAAAGC
TTGGCCCAGGAGGGCCTCCTAATCTCGCCTTTGTGTTTGTGTCGGTGCGG
TATAGCCTTTCAAACATCGGTCCATCCGGTCGCGACTCGCTCGACTTGGT
AGTTCCGCGTCTTCGCGCTTTGGTTCCAGAACTGAAGGCAGTTCTTGGAT
GCACTTCCGACGGGGTCATTGGCAGTGGTCCCCTGAGCGATGTCGTTGAG
CTACAAAACGTACCTTCAGTGTCCATTACCCTTGGCCGTCTTCCCAAAGT
GAAAATAACGCCATTCCACGTGATGCCGGACGATTTGCCAAACCCGGACG
CCAGACAAAGCGAATGGAGGCGCCTAGTTTCAAATCCAGACGACGCAAAC
AACCCCCCAGCATTTATTGTGCTCTCTGATCCGAGCTTCGCTGAGAGAGG
GGAGCTTGATACTTTTCTTTCTGGCGTGGAATTTGCGTATCCTGGAAGTT
GCGTAGTTGGCTCTCTAGCCTCTGCAGCAGCGGCTTTTGCCCGAGGACAT
ATGTTTTGCACGTTGCCTAGAGATGTGCTTTCACCACATTCTTCGTCTTT
GAGAGACTCCGGCTTGGTAGGAATCGCATTAACGGGTGATATTGAGCTGG
ACTGTCTTGTTTCAGCTGGCTGTCGGTCCATAGGACCTATATATGAAGTT
CGTAAAGTTTCTAATGGAATTGTCAGGGAAATGGAGTTGGTTGGACGTCC
GTCTACCCTCATGTCGGCAATGTCGCATTTGAGGAGCATAATATCTTACG
CAACATCACAGGAAAAGGTGCTAATGCAAGATCAACTACATGTTGGCATC
GCTATCGAGTCTGTTGCTAATTCAGACTCCGACTCTGAAGCTTATCTTAT
CCGCCATGTGATAGGCGTTGATATGGATGGAGGTGGTATTTCAGTTGCCC
ACAACGTCCGTCCCGGTCAGCGCATTCGCTTCTTTTTGCAAGAACCGGAA
GCTGCAGAAAAGGCGCTTGACACCAACATCCAAAGATATAAACGAGCGGA
ACTAGCCAATTCTTTGGTTGGGTACAGCAACCCGCCTTTTGGAGCCATGG
TCTTCGTGGACAATGGTCGTGGGCGAGCTCTCTTCCGTGAGCGGTGTATA
GAAACGAAGAACCTGACAGAGTTTGCGACAGGCGTGCCTATAAGCGGTTG
CTTTGCAGGGGGACAGATTGGGCCATGCAAATCCGGCGGAGGTGACAAGA
ATATGCCTTCCGTAATTCATCACGCTGCAAATCTTATCGCTTTTGTTCGA
AGAAGAAGTGGTATTTCACCTTCAGAACCGGTCGACAGCCCCTCTACTTC
GGCTGCGGATCTCGACGAAGGTCCGGAGAGGTAA