Gcaud7653.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7653.t1
Unique Name	Gcaud7653.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_273_length_32656_cov_4.516229	contig	NODE_273_length_32656_cov_4.516229:4072..4950 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	497965.Cyan7822_1380
Preferred name	trmB
PFAMs	Methyltransf_4
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03439
GOs	GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234
Evalue	1.02e-57
EggNOG OGs	COG0220@1\|root,COG0220@2\|Bacteria,1G312@1117\|Cyanobacteria,3KHHX@43988\|Cyanothece
EC	2.1.1.33
Description	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7653	Gcaud7653	Gracilaria caudata M_176_S67 male	gene	NODE_273_length_32656_cov_4.516229 4072..4950 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7653.t1.stop1	Gcaud7653.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_273_length_32656_cov_4.516229 4072..4074 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7653.t1.CDS1	Gcaud7653.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_273_length_32656_cov_4.516229 4072..4950 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7653.t1.exon1	Gcaud7653.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_273_length_32656_cov_4.516229 4072..4950 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7653.t1.start1	Gcaud7653.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_273_length_32656_cov_4.516229 4948..4950 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7653.t1	Gcaud7653.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_273_length_32656_cov_4.516229 4072..4950 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_273_length_32656_cov_4.516229:4072..4950-
coding sequence from alignment at NODE_273_length_32656_cov_4.516229:4072..4950-

mRNA sequence

>Gcaud7653.t1 ID=Gcaud7653.t1|Name=Gcaud7653.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=293bp
MLRPLFAPPLRLPVAPLLHPSRLSPPRLRCRQMYRAPASQLIQPPPEAIA
TQTGQIRVRQHLNPLARRWSQPIKLPKDWYATAFEDTSLPLVVDVGVAKG
RFLLKMAQMNRRHNFLGIEIREPLVHQANRCAEQAGLSNLFYLAGNANVS
LLSILDECPDGVLQQLLIQFCDPWFKKRHAKRRMVNTALVRDIHHILQKS
RNTAVSNTPHDVIEPRVFVQSDVLEVASEMTDLFDQHGGFVRLQNENELQ
VDSHGWLRSNPLGVPTEREVAVLNKGGSVYRALYQINNVGTT*

spliced messenger RNA

>Gcaud7653.t1 ID=Gcaud7653.t1|Name=Gcaud7653.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:4072..4950- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACGCCCGTTGTTCGCGCCGCCGCTGCGACTCCCAGTCGCTCCTTT
GCTCCATCCTTCCCGGTTATCTCCGCCTCGTCTTCGCTGTCGCCAGATGT
ATCGCGCCCCGGCTTCACAGCTGATACAGCCACCGCCAGAAGCAATTGCC
ACGCAAACTGGACAGATTCGAGTGCGTCAGCATCTCAACCCACTAGCGCG
TCGATGGAGTCAGCCGATAAAACTGCCAAAAGATTGGTATGCCACTGCGT
TTGAGGATACTTCTCTTCCCCTTGTTGTCGATGTTGGAGTTGCAAAGGGT
CGCTTTTTATTGAAGATGGCGCAAATGAATCGGCGGCATAATTTTCTTGG
TATTGAGATTCGAGAACCCTTGGTTCATCAGGCCAATCGATGTGCTGAAC
AGGCAGGTTTGAGTAACTTGTTCTACCTTGCTGGAAATGCTAATGTTTCA
TTATTGTCAATTTTGGACGAATGTCCTGATGGTGTGCTTCAACAACTTCT
CATTCAGTTTTGTGATCCATGGTTTAAGAAACGCCATGCAAAGCGTAGAA
TGGTGAATACGGCGCTTGTGCGAGATATACATCACATCCTCCAAAAGTCC
AGAAACACTGCTGTGTCAAACACGCCACACGATGTGATCGAGCCCCGGGT
TTTTGTTCAAAGCGATGTCTTAGAAGTTGCGTCTGAGATGACCGACCTGT
TTGACCAACATGGCGGATTCGTACGACTTCAAAACGAGAATGAATTGCAA
GTTGATAGCCATGGTTGGTTGCGCAGCAATCCGCTGGGCGTCCCTACGGA
GCGAGAGGTTGCTGTCCTTAACAAAGGAGGTTCTGTCTATCGTGCATTGT
ATCAAATTAACAATGTTGGTACAACATGA

protein sequence of Gcaud7653.t1

>Gcaud7653.t1 ID=Gcaud7653.t1|Name=Gcaud7653.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MLRPLFAPPLRLPVAPLLHPSRLSPPRLRCRQMYRAPASQLIQPPPEAIA
TQTGQIRVRQHLNPLARRWSQPIKLPKDWYATAFEDTSLPLVVDVGVAKG
RFLLKMAQMNRRHNFLGIEIREPLVHQANRCAEQAGLSNLFYLAGNANVS
LLSILDECPDGVLQQLLIQFCDPWFKKRHAKRRMVNTALVRDIHHILQKS
RNTAVSNTPHDVIEPRVFVQSDVLEVASEMTDLFDQHGGFVRLQNENELQ
VDSHGWLRSNPLGVPTEREVAVLNKGGSVYRALYQINNVGTT*

mRNA from alignment at NODE_273_length_32656_cov_4.516229:4072..4950-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7653.t1 ID=Gcaud7653.t1|Name=Gcaud7653.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:4072..4950- (Gracilaria caudata M_176_S67 male)
ATGTTACGCCCGTTGTTCGCGCCGCCGCTGCGACTCCCAGTCGCTCCTTT
GCTCCATCCTTCCCGGTTATCTCCGCCTCGTCTTCGCTGTCGCCAGATGT
ATCGCGCCCCGGCTTCACAGCTGATACAGCCACCGCCAGAAGCAATTGCC
ACGCAAACTGGACAGATTCGAGTGCGTCAGCATCTCAACCCACTAGCGCG
TCGATGGAGTCAGCCGATAAAACTGCCAAAAGATTGGTATGCCACTGCGT
TTGAGGATACTTCTCTTCCCCTTGTTGTCGATGTTGGAGTTGCAAAGGGT
CGCTTTTTATTGAAGATGGCGCAAATGAATCGGCGGCATAATTTTCTTGG
TATTGAGATTCGAGAACCCTTGGTTCATCAGGCCAATCGATGTGCTGAAC
AGGCAGGTTTGAGTAACTTGTTCTACCTTGCTGGAAATGCTAATGTTTCA
TTATTGTCAATTTTGGACGAATGTCCTGATGGTGTGCTTCAACAACTTCT
CATTCAGTTTTGTGATCCATGGTTTAAGAAACGCCATGCAAAGCGTAGAA
TGGTGAATACGGCGCTTGTGCGAGATATACATCACATCCTCCAAAAGTCC
AGAAACACTGCTGTGTCAAACACGCCACACGATGTGATCGAGCCCCGGGT
TTTTGTTCAAAGCGATGTCTTAGAAGTTGCGTCTGAGATGACCGACCTGT
TTGACCAACATGGCGGATTCGTACGACTTCAAAACGAGAATGAATTGCAA
GTTGATAGCCATGGTTGGTTGCGCAGCAATCCGCTGGGCGTCCCTACGGA
GCGAGAGGTTGCTGTCCTTAACAAAGGAGGTTCTGTCTATCGTGCATTGT
ATCAAATTAACAATGTTGGTACAACATGA

Coding sequence (CDS) from alignment at NODE_273_length_32656_cov_4.516229:4072..4950-

>Gcaud7653.t1 ID=Gcaud7653.t1|Name=Gcaud7653.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=879bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:4072..4950- (Gracilaria caudata M_176_S67 male)
ATGTTACGCCCGTTGTTCGCGCCGCCGCTGCGACTCCCAGTCGCTCCTTT
GCTCCATCCTTCCCGGTTATCTCCGCCTCGTCTTCGCTGTCGCCAGATGT
ATCGCGCCCCGGCTTCACAGCTGATACAGCCACCGCCAGAAGCAATTGCC
ACGCAAACTGGACAGATTCGAGTGCGTCAGCATCTCAACCCACTAGCGCG
TCGATGGAGTCAGCCGATAAAACTGCCAAAAGATTGGTATGCCACTGCGT
TTGAGGATACTTCTCTTCCCCTTGTTGTCGATGTTGGAGTTGCAAAGGGT
CGCTTTTTATTGAAGATGGCGCAAATGAATCGGCGGCATAATTTTCTTGG
TATTGAGATTCGAGAACCCTTGGTTCATCAGGCCAATCGATGTGCTGAAC
AGGCAGGTTTGAGTAACTTGTTCTACCTTGCTGGAAATGCTAATGTTTCA
TTATTGTCAATTTTGGACGAATGTCCTGATGGTGTGCTTCAACAACTTCT
CATTCAGTTTTGTGATCCATGGTTTAAGAAACGCCATGCAAAGCGTAGAA
TGGTGAATACGGCGCTTGTGCGAGATATACATCACATCCTCCAAAAGTCC
AGAAACACTGCTGTGTCAAACACGCCACACGATGTGATCGAGCCCCGGGT
TTTTGTTCAAAGCGATGTCTTAGAAGTTGCGTCTGAGATGACCGACCTGT
TTGACCAACATGGCGGATTCGTACGACTTCAAAACGAGAATGAATTGCAA
GTTGATAGCCATGGTTGGTTGCGCAGCAATCCGCTGGGCGTCCCTACGGA
GCGAGAGGTTGCTGTCCTTAACAAAGGAGGTTCTGTCTATCGTGCATTGT
ATCAAATTAACAATGTTGGTACAACATGA