Gcaud7652.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7652.t1
Unique NameGcaud7652.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length64
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3136_length_3971_cov_5.049227contigNODE_3136_length_3971_cov_5.049227:2..270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7652Gcaud7652Gracilaria caudata M_176_S67 malegeneNODE_3136_length_3971_cov_5.049227 2..270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7652.t1Gcaud7652.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3136_length_3971_cov_5.049227 2..270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7652.t1.CDS1Gcaud7652.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3136_length_3971_cov_5.049227 2..190 -
Gcaud7652.t1.CDS2Gcaud7652.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_3136_length_3971_cov_5.049227 268..270 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7652.t1.exon1Gcaud7652.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3136_length_3971_cov_5.049227 2..190 -
Gcaud7652.t1.exon2Gcaud7652.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_3136_length_3971_cov_5.049227 268..270 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7652.t1.intron1Gcaud7652.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_3136_length_3971_cov_5.049227 191..267 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7652.t1.start1Gcaud7652.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3136_length_3971_cov_5.049227 268..270 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7652.t1 ID=Gcaud7652.t1|Name=Gcaud7652.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=64bp
LEEVSVHAVVSHTHASHGQGSIEKDVHPSEAYAARAILQGRENIERTIRA
LARDSSLTVQERTR
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spliced messenger RNA

>Gcaud7652.t1 ID=Gcaud7652.t1|Name=Gcaud7652.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=192bp|location=Sequence derived from alignment at NODE_3136_length_3971_cov_5.049227:2..270- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGAAGAAGTTTCGGTTCATGCGGTTGTCTCCCACACACACGCGTCTCA
TGGTCAAGGTTCTATTGAAAAAGATGTTCACCCAAGTGAGGCTTATGCAG
CTCGTGCTATTTTGCAGGGACGTGAGAACATTGAAAGAACTATCCGAGCT
TTAGCTCGCGACTCTTCGCTTACTGTGCAAGAACGTACAAGA
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protein sequence of Gcaud7652.t1

>Gcaud7652.t1 ID=Gcaud7652.t1|Name=Gcaud7652.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=64bp
LEEVSVHAVVSHTHASHGQGSIEKDVHPSEAYAARAILQGRENIERTIRA
LARDSSLTVQERTR
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mRNA from alignment at NODE_3136_length_3971_cov_5.049227:2..270-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7652.t1 ID=Gcaud7652.t1|Name=Gcaud7652.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=269bp|location=Sequence derived from alignment at NODE_3136_length_3971_cov_5.049227:2..270- (Gracilaria caudata M_176_S67 male)
CTGGTACGTTGCAACAATATTATGATGTAACGAAGTCCACAATGTTTGAA
AAATGGTTAAACTCATGGCTCCCCCTCCAGGAAGAAGTTTCGGTTCATGC
GGTTGTCTCCCACACACACGCGTCTCATGGTCAAGGTTCTATTGAAAAAG
ATGTTCACCCAAGTGAGGCTTATGCAGCTCGTGCTATTTTGCAGGGACGT
GAGAACATTGAAAGAACTATCCGAGCTTTAGCTCGCGACTCTTCGCTTAC
TGTGCAAGAACGTACAAGA
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Coding sequence (CDS) from alignment at NODE_3136_length_3971_cov_5.049227:2..270-

>Gcaud7652.t1 ID=Gcaud7652.t1|Name=Gcaud7652.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=192bp|location=Sequence derived from alignment at NODE_3136_length_3971_cov_5.049227:2..270- (Gracilaria caudata M_176_S67 male)
CTGGAAGAAGTTTCGGTTCATGCGGTTGTCTCCCACACACACGCGTCTCA
TGGTCAAGGTTCTATTGAAAAAGATGTTCACCCAAGTGAGGCTTATGCAG
CTCGTGCTATTTTGCAGGGACGTGAGAACATTGAAAGAACTATCCGAGCT
TTAGCTCGCGACTCTTCGCTTACTGTGCAAGAACGTACAAGA
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