Gcaud7645.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7645.t1
Unique Name	Gcaud7645.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	583

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_240_length_34680_cov_4.545549	contig	NODE_240_length_34680_cov_4.545549:28261..30009 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123368.AUIS01000024_gene971
PFAMs	CarboxypepD_reg,PKD,PQQ_2,RCC1_2,SBBP
Max annot lvl	2\|Bacteria
KEGG ko	ko:K20276
KEGG Pathway	ko02024,map02024
Evalue	4.26e-11
EggNOG OGs	COG1520@1\|root,COG5184@1\|root,COG1520@2\|Bacteria,COG5184@2\|Bacteria
Description	guanyl-nucleotide exchange factor activity
COG category	DZ
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7645	Gcaud7645	Gracilaria caudata M_176_S67 male	gene	NODE_240_length_34680_cov_4.545549 28261..30009 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7645.t1.start1	Gcaud7645.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_240_length_34680_cov_4.545549 28261..28263 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7645.t1.CDS1	Gcaud7645.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_240_length_34680_cov_4.545549 28261..30009 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7645.t1.exon1	Gcaud7645.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_240_length_34680_cov_4.545549 28261..30009 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7645.t1.stop1	Gcaud7645.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_240_length_34680_cov_4.545549 30007..30009 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7645.t1	Gcaud7645.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_240_length_34680_cov_4.545549 28261..30009 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_240_length_34680_cov_4.545549:28261..30009+
coding sequence from alignment at NODE_240_length_34680_cov_4.545549:28261..30009+

mRNA sequence

>Gcaud7645.t1 ID=Gcaud7645.t1|Name=Gcaud7645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=583bp
MKENVYLKHDSYPSSSNLDDILRQHSRYGAAKRGYISKRYTSILLFVCLL
QHIGTKSTFVKAKTFVPLAYVGNVSTSNDEPVQVEVRYDDCIFVGGNTSP
FERGSESDLGVPLSQGLRREDVFIAKILGKTKTTEWVYRIGTSKEDRLQT
MLLSEDGRYLYAGGRTFGQFPGTSYGGQADIFIIKYDVSGNRLDEVWATP
MILGSLASEAVIHMTVDPVNDTIIYATGFTTGELFQGRPQSGDGLSDVIL
FSFSATDGSVLWGTQFGTEYADHGTGIVVANVEDGPIFVGGITERRVGQF
SFGNFHLYKFSRTGSTLGSLLLRSYSREQLVGFQRHPMLQNSLLAVGSSW
LDIRNGFDVFVKKIIRGFDQSDIGYSEVDIDEVGQGEYTFRLQSADQSHD
YASGLLVDDQSGRLIISGYSGGSFARNVVNNGVLAPFIVSVDPMNVSAYH
AEQLELIGVDGWVEIAAIGMNPERNGVYYVAKEKNETSNQFHTVVGSFGF
PVSWKTPIVIPISPSPSPSTSQLPEGDPNSFKLSPPIITGIACGGVVCAL
FVLVVMISFRRRTIARSAAKRRRIPNTNVGSL*

spliced messenger RNA

>Gcaud7645.t1 ID=Gcaud7645.t1|Name=Gcaud7645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:28261..30009+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGAAAATGTATATCTTAAGCACGACTCTTACCCTAGCTCTTCAAA
CTTGGACGATATACTTCGTCAACACAGTCGATACGGAGCTGCGAAACGCG
GCTATATTTCCAAACGCTACACCAGTATCCTTCTTTTTGTGTGCCTTTTG
CAGCATATTGGCACAAAAAGCACATTCGTCAAGGCAAAGACATTTGTTCC
ACTTGCCTACGTCGGTAACGTTTCGACGAGTAATGATGAACCCGTTCAGG
TTGAAGTAAGATACGATGATTGCATATTCGTGGGCGGAAATACATCTCCT
TTCGAACGTGGTTCCGAGAGCGACCTTGGGGTTCCTCTTTCACAGGGGCT
TAGGAGAGAAGACGTCTTTATCGCTAAAATCTTAGGAAAAACGAAAACAA
CGGAGTGGGTCTACCGTATCGGAACTTCAAAAGAAGATAGACTGCAAACC
ATGCTTCTTAGTGAGGATGGAAGATATCTCTATGCAGGTGGGAGAACATT
CGGTCAGTTTCCGGGAACCTCCTACGGCGGGCAGGCCGATATCTTCATTA
TCAAATATGATGTTAGTGGGAATAGACTTGATGAGGTGTGGGCAACACCC
ATGATACTGGGTTCTTTAGCATCCGAGGCCGTTATTCATATGACAGTTGA
CCCTGTTAACGATACAATCATCTATGCCACTGGGTTCACTACTGGAGAAT
TATTTCAGGGTCGTCCGCAGAGTGGTGATGGGCTGTCAGACGTTATACTT
TTCTCATTCTCAGCCACTGATGGATCTGTACTTTGGGGCACGCAGTTTGG
GACAGAATACGCTGACCACGGGACTGGTATTGTAGTTGCAAATGTAGAAG
ATGGTCCCATATTTGTAGGGGGTATAACAGAGAGACGTGTCGGTCAGTTT
AGCTTTGGGAATTTTCATCTCTACAAGTTTTCGAGAACTGGCAGCACTCT
AGGGAGTTTGCTTCTTCGTTCATACTCGAGAGAACAGTTGGTTGGCTTTC
AGAGACATCCAATGCTCCAGAACTCACTCCTTGCTGTCGGATCATCGTGG
TTAGACATACGTAACGGGTTCGACGTTTTCGTGAAGAAAATCATTCGAGG
GTTCGACCAAAGCGATATAGGATATTCGGAGGTTGACATAGATGAAGTTG
GGCAAGGTGAGTATACTTTTCGACTCCAATCAGCAGACCAAAGTCATGAT
TATGCGTCTGGGCTTCTTGTAGACGACCAGAGTGGTCGTCTCATCATATC
TGGATACTCAGGTGGTTCATTTGCGCGCAATGTCGTGAACAATGGCGTAT
TAGCGCCATTCATTGTTTCAGTCGATCCAATGAACGTCTCTGCGTATCAC
GCAGAACAGCTGGAACTGATTGGGGTGGATGGATGGGTCGAAATTGCCGC
CATTGGAATGAACCCTGAACGCAACGGGGTGTACTATGTGGCGAAGGAAA
AGAACGAGACCAGCAACCAATTCCACACAGTAGTCGGATCATTCGGCTTC
CCCGTTTCTTGGAAGACTCCAATCGTAATTCCCATATCGCCATCCCCTAG
TCCCTCTACTTCACAGCTCCCAGAGGGGGACCCAAACAGTTTCAAGCTTT
CGCCACCAATTATCACTGGCATAGCCTGTGGGGGAGTCGTTTGCGCTCTA
TTTGTTCTCGTCGTCATGATTAGTTTTAGAAGACGTACTATAGCTCGCAG
TGCCGCAAAACGCAGACGCATTCCCAACACTAATGTGGGCTCACTCTGA

protein sequence of Gcaud7645.t1

>Gcaud7645.t1 ID=Gcaud7645.t1|Name=Gcaud7645.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=583bp
MKENVYLKHDSYPSSSNLDDILRQHSRYGAAKRGYISKRYTSILLFVCLL
QHIGTKSTFVKAKTFVPLAYVGNVSTSNDEPVQVEVRYDDCIFVGGNTSP
FERGSESDLGVPLSQGLRREDVFIAKILGKTKTTEWVYRIGTSKEDRLQT
MLLSEDGRYLYAGGRTFGQFPGTSYGGQADIFIIKYDVSGNRLDEVWATP
MILGSLASEAVIHMTVDPVNDTIIYATGFTTGELFQGRPQSGDGLSDVIL
FSFSATDGSVLWGTQFGTEYADHGTGIVVANVEDGPIFVGGITERRVGQF
SFGNFHLYKFSRTGSTLGSLLLRSYSREQLVGFQRHPMLQNSLLAVGSSW
LDIRNGFDVFVKKIIRGFDQSDIGYSEVDIDEVGQGEYTFRLQSADQSHD
YASGLLVDDQSGRLIISGYSGGSFARNVVNNGVLAPFIVSVDPMNVSAYH
AEQLELIGVDGWVEIAAIGMNPERNGVYYVAKEKNETSNQFHTVVGSFGF
PVSWKTPIVIPISPSPSPSTSQLPEGDPNSFKLSPPIITGIACGGVVCAL
FVLVVMISFRRRTIARSAAKRRRIPNTNVGSL*

mRNA from alignment at NODE_240_length_34680_cov_4.545549:28261..30009+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7645.t1 ID=Gcaud7645.t1|Name=Gcaud7645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:28261..30009+ (Gracilaria caudata M_176_S67 male)
ATGAAAGAAAATGTATATCTTAAGCACGACTCTTACCCTAGCTCTTCAAA
CTTGGACGATATACTTCGTCAACACAGTCGATACGGAGCTGCGAAACGCG
GCTATATTTCCAAACGCTACACCAGTATCCTTCTTTTTGTGTGCCTTTTG
CAGCATATTGGCACAAAAAGCACATTCGTCAAGGCAAAGACATTTGTTCC
ACTTGCCTACGTCGGTAACGTTTCGACGAGTAATGATGAACCCGTTCAGG
TTGAAGTAAGATACGATGATTGCATATTCGTGGGCGGAAATACATCTCCT
TTCGAACGTGGTTCCGAGAGCGACCTTGGGGTTCCTCTTTCACAGGGGCT
TAGGAGAGAAGACGTCTTTATCGCTAAAATCTTAGGAAAAACGAAAACAA
CGGAGTGGGTCTACCGTATCGGAACTTCAAAAGAAGATAGACTGCAAACC
ATGCTTCTTAGTGAGGATGGAAGATATCTCTATGCAGGTGGGAGAACATT
CGGTCAGTTTCCGGGAACCTCCTACGGCGGGCAGGCCGATATCTTCATTA
TCAAATATGATGTTAGTGGGAATAGACTTGATGAGGTGTGGGCAACACCC
ATGATACTGGGTTCTTTAGCATCCGAGGCCGTTATTCATATGACAGTTGA
CCCTGTTAACGATACAATCATCTATGCCACTGGGTTCACTACTGGAGAAT
TATTTCAGGGTCGTCCGCAGAGTGGTGATGGGCTGTCAGACGTTATACTT
TTCTCATTCTCAGCCACTGATGGATCTGTACTTTGGGGCACGCAGTTTGG
GACAGAATACGCTGACCACGGGACTGGTATTGTAGTTGCAAATGTAGAAG
ATGGTCCCATATTTGTAGGGGGTATAACAGAGAGACGTGTCGGTCAGTTT
AGCTTTGGGAATTTTCATCTCTACAAGTTTTCGAGAACTGGCAGCACTCT
AGGGAGTTTGCTTCTTCGTTCATACTCGAGAGAACAGTTGGTTGGCTTTC
AGAGACATCCAATGCTCCAGAACTCACTCCTTGCTGTCGGATCATCGTGG
TTAGACATACGTAACGGGTTCGACGTTTTCGTGAAGAAAATCATTCGAGG
GTTCGACCAAAGCGATATAGGATATTCGGAGGTTGACATAGATGAAGTTG
GGCAAGGTGAGTATACTTTTCGACTCCAATCAGCAGACCAAAGTCATGAT
TATGCGTCTGGGCTTCTTGTAGACGACCAGAGTGGTCGTCTCATCATATC
TGGATACTCAGGTGGTTCATTTGCGCGCAATGTCGTGAACAATGGCGTAT
TAGCGCCATTCATTGTTTCAGTCGATCCAATGAACGTCTCTGCGTATCAC
GCAGAACAGCTGGAACTGATTGGGGTGGATGGATGGGTCGAAATTGCCGC
CATTGGAATGAACCCTGAACGCAACGGGGTGTACTATGTGGCGAAGGAAA
AGAACGAGACCAGCAACCAATTCCACACAGTAGTCGGATCATTCGGCTTC
CCCGTTTCTTGGAAGACTCCAATCGTAATTCCCATATCGCCATCCCCTAG
TCCCTCTACTTCACAGCTCCCAGAGGGGGACCCAAACAGTTTCAAGCTTT
CGCCACCAATTATCACTGGCATAGCCTGTGGGGGAGTCGTTTGCGCTCTA
TTTGTTCTCGTCGTCATGATTAGTTTTAGAAGACGTACTATAGCTCGCAG
TGCCGCAAAACGCAGACGCATTCCCAACACTAATGTGGGCTCACTCTGA

Coding sequence (CDS) from alignment at NODE_240_length_34680_cov_4.545549:28261..30009+

>Gcaud7645.t1 ID=Gcaud7645.t1|Name=Gcaud7645.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1749bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:28261..30009+ (Gracilaria caudata M_176_S67 male)
ATGAAAGAAAATGTATATCTTAAGCACGACTCTTACCCTAGCTCTTCAAA
CTTGGACGATATACTTCGTCAACACAGTCGATACGGAGCTGCGAAACGCG
GCTATATTTCCAAACGCTACACCAGTATCCTTCTTTTTGTGTGCCTTTTG
CAGCATATTGGCACAAAAAGCACATTCGTCAAGGCAAAGACATTTGTTCC
ACTTGCCTACGTCGGTAACGTTTCGACGAGTAATGATGAACCCGTTCAGG
TTGAAGTAAGATACGATGATTGCATATTCGTGGGCGGAAATACATCTCCT
TTCGAACGTGGTTCCGAGAGCGACCTTGGGGTTCCTCTTTCACAGGGGCT
TAGGAGAGAAGACGTCTTTATCGCTAAAATCTTAGGAAAAACGAAAACAA
CGGAGTGGGTCTACCGTATCGGAACTTCAAAAGAAGATAGACTGCAAACC
ATGCTTCTTAGTGAGGATGGAAGATATCTCTATGCAGGTGGGAGAACATT
CGGTCAGTTTCCGGGAACCTCCTACGGCGGGCAGGCCGATATCTTCATTA
TCAAATATGATGTTAGTGGGAATAGACTTGATGAGGTGTGGGCAACACCC
ATGATACTGGGTTCTTTAGCATCCGAGGCCGTTATTCATATGACAGTTGA
CCCTGTTAACGATACAATCATCTATGCCACTGGGTTCACTACTGGAGAAT
TATTTCAGGGTCGTCCGCAGAGTGGTGATGGGCTGTCAGACGTTATACTT
TTCTCATTCTCAGCCACTGATGGATCTGTACTTTGGGGCACGCAGTTTGG
GACAGAATACGCTGACCACGGGACTGGTATTGTAGTTGCAAATGTAGAAG
ATGGTCCCATATTTGTAGGGGGTATAACAGAGAGACGTGTCGGTCAGTTT
AGCTTTGGGAATTTTCATCTCTACAAGTTTTCGAGAACTGGCAGCACTCT
AGGGAGTTTGCTTCTTCGTTCATACTCGAGAGAACAGTTGGTTGGCTTTC
AGAGACATCCAATGCTCCAGAACTCACTCCTTGCTGTCGGATCATCGTGG
TTAGACATACGTAACGGGTTCGACGTTTTCGTGAAGAAAATCATTCGAGG
GTTCGACCAAAGCGATATAGGATATTCGGAGGTTGACATAGATGAAGTTG
GGCAAGGTGAGTATACTTTTCGACTCCAATCAGCAGACCAAAGTCATGAT
TATGCGTCTGGGCTTCTTGTAGACGACCAGAGTGGTCGTCTCATCATATC
TGGATACTCAGGTGGTTCATTTGCGCGCAATGTCGTGAACAATGGCGTAT
TAGCGCCATTCATTGTTTCAGTCGATCCAATGAACGTCTCTGCGTATCAC
GCAGAACAGCTGGAACTGATTGGGGTGGATGGATGGGTCGAAATTGCCGC
CATTGGAATGAACCCTGAACGCAACGGGGTGTACTATGTGGCGAAGGAAA
AGAACGAGACCAGCAACCAATTCCACACAGTAGTCGGATCATTCGGCTTC
CCCGTTTCTTGGAAGACTCCAATCGTAATTCCCATATCGCCATCCCCTAG
TCCCTCTACTTCACAGCTCCCAGAGGGGGACCCAAACAGTTTCAAGCTTT
CGCCACCAATTATCACTGGCATAGCCTGTGGGGGAGTCGTTTGCGCTCTA
TTTGTTCTCGTCGTCATGATTAGTTTTAGAAGACGTACTATAGCTCGCAG
TGCCGCAAAACGCAGACGCATTCCCAACACTAATGTGGGCTCACTCTGA