Gcaud7643.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7643.t1
Unique NameGcaud7643.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_240_length_34680_cov_4.545549contigNODE_240_length_34680_cov_4.545549:24139..25682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708456.1
PFAMsAcetyltransf_1
Max annot lvl2759|Eukaryota
KEGG koko:K20793
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004402,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010485,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0022402,GO:0031365,GO:0034085,GO:0034087,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048285,GO:0051276,GO:0051604,GO:0052858,GO:0061733,GO:0070601,GO:0071704,GO:0071840,GO:0071962,GO:0098813,GO:0140014,GO:1901564,GO:1903047
Evalue2.11e-45
EggNOG OGsCOG0456@1|root,KOG3138@2759|Eukaryota
EC2.3.1.258
Descriptionpeptide alpha-N-acetyltransferase activity
COG categoryK
BRITEko00000,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7643Gcaud7643Gracilaria caudata M_176_S67 malegeneNODE_240_length_34680_cov_4.545549 24139..25682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7643.t1Gcaud7643.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_240_length_34680_cov_4.545549 24139..25682 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7643.t1.start1Gcaud7643.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_240_length_34680_cov_4.545549 24139..24141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7643.t1.CDS1Gcaud7643.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_240_length_34680_cov_4.545549 24139..24239 +
Gcaud7643.t1.CDS2Gcaud7643.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_240_length_34680_cov_4.545549 24492..24541 +
Gcaud7643.t1.CDS3Gcaud7643.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_240_length_34680_cov_4.545549 25147..25682 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7643.t1.exon1Gcaud7643.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_240_length_34680_cov_4.545549 24139..24239 +
Gcaud7643.t1.exon2Gcaud7643.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_240_length_34680_cov_4.545549 24492..24541 +
Gcaud7643.t1.exon3Gcaud7643.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_240_length_34680_cov_4.545549 25147..25682 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7643.t1.intron1Gcaud7643.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_240_length_34680_cov_4.545549 24240..24491 +
Gcaud7643.t1.intron2Gcaud7643.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_240_length_34680_cov_4.545549 24542..25146 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7643.t1.stop1Gcaud7643.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_240_length_34680_cov_4.545549 25680..25682 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7643.t1 ID=Gcaud7643.t1|Name=Gcaud7643.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=229bp
MFLLRPPSNIITYHHPTITSFGPTTIPHRAYRPHTKLHSQRIYKPNCSTP
FWGDVNEKNVNQLEILNTTIFPVKYNDMFYKEVLKAPDGFVKLAYYNELL
VGGVSCRKEPYFPFQIALEKQKSSHIKPAEPYTTNDASLYIMTLGVLAPY
RERGIGHRLITHVLDLVESSPACKDVVDIYLHLQEGNDDALRFYRRYGFE
VTEHIQGYYKRLVPPNCYVVRKKVTRQT*
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spliced messenger RNA

>Gcaud7643.t1 ID=Gcaud7643.t1|Name=Gcaud7643.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:24139..25682+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTTGCTTCGTCCCCCTTCTAACATTATAACATATCATCACCCAAC
CATTACGTCTTTTGGTCCTACAACAATACCTCATCGTGCTTACCGTCCCC
ATACAAAACTCCATTCTCAGAGAATCTATAAACCAAACTGCAGTACCCCT
TTCTGGGGAGACGTGAACGAGAAGAATGTGAATCAACTTGAAATTCTCAA
CACCACAATTTTCCCTGTCAAATATAATGACATGTTCTACAAAGAAGTGT
TAAAAGCGCCGGATGGGTTCGTCAAGCTTGCTTACTACAACGAGCTATTA
GTCGGAGGCGTTAGTTGCCGAAAGGAACCATATTTTCCATTCCAAATTGC
GCTTGAAAAGCAAAAGTCATCGCACATAAAACCCGCGGAACCATACACTA
CCAACGACGCTAGTTTGTACATAATGACCTTAGGAGTTTTAGCTCCCTAT
CGCGAAAGAGGAATCGGTCATCGCCTCATCACTCATGTTTTGGATCTTGT
CGAATCCTCTCCTGCATGCAAGGATGTTGTTGACATATATCTTCACCTGC
AGGAAGGGAACGATGATGCGTTGCGATTTTACAGGCGATACGGGTTTGAA
GTGACTGAACATATTCAAGGGTATTACAAACGACTTGTTCCTCCCAACTG
CTACGTCGTTCGAAAGAAGGTTACTAGACAGACATAG
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protein sequence of Gcaud7643.t1

>Gcaud7643.t1 ID=Gcaud7643.t1|Name=Gcaud7643.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=229bp
MFLLRPPSNIITYHHPTITSFGPTTIPHRAYRPHTKLHSQRIYKPNCSTP
FWGDVNEKNVNQLEILNTTIFPVKYNDMFYKEVLKAPDGFVKLAYYNELL
VGGVSCRKEPYFPFQIALEKQKSSHIKPAEPYTTNDASLYIMTLGVLAPY
RERGIGHRLITHVLDLVESSPACKDVVDIYLHLQEGNDDALRFYRRYGFE
VTEHIQGYYKRLVPPNCYVVRKKVTRQT*
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mRNA from alignment at NODE_240_length_34680_cov_4.545549:24139..25682+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7643.t1 ID=Gcaud7643.t1|Name=Gcaud7643.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1544bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:24139..25682+ (Gracilaria caudata M_176_S67 male)
ATGTTCTTGCTTCGTCCCCCTTCTAACATTATAACATATCATCACCCAAC
CATTACGTCTTTTGGTCCTACAACAATACCTCATCGTGCTTACCGTCCCC
AGTACGTTCTTGCTCAAAATCAAATGCAAACCTGTAGACTGGCACCAGCT
TCGACAGACGTGCTTTACACATCTCTTGCGAACGCGTTCATCAACATAAT
GTTGTGTATGTGCGCGTTCTATAAACAGACATTCACTCAGTAAACCGTTC
GCCAGACTTAATTCTCCTGTCGAGCGTTGTTCTCACAACACTTTCGTAGC
CTCCTGACACTCTTTGTGCTTCTTTCCAACGTGCCTTTTCGTGTTGTCAA
CAGTACAAAACTCCATTCTCAGAGAATCTATAAACCAAACTGCAGTACCC
CTTGTGCTCGTTTGGTCCAACATCGGCTCCGTTGGTAACACCGTAACTTG
AGTACAACATAACCTCGCACCCACGTCACATCCTTGTCCCACACGCTTGA
GCCTGCGAGGCCCGCTCTGTCCGACCAGTCCTGAACTTGATCATGGTGCG
GTGTCAGCGGTTAGCTTCACAAGATTCGCCTCGCGCAGGTAGAAAACTCG
AAAAAGGGCAAATTTGACAACACCACTCTCAAAGAGTTCGCATTTTCGCG
GGAAACCGGCCTACACCTGCATCGTGCAGCATGGTCATGCCAGACCATGT
GAAACTGTTCCCGTCCTTGTCCATGAGCACAGTTCCAACTGGTTACGCCG
ACCATAGTGGGACGTGGTCGACACGTCAGGTCTTTTGCGGAAAACGATAT
GCAAACCTTGTCTGAGGGGGATTTTCACTTGCGTGCTGGCTTGCGTATAC
ACTTGACAATATCAACCTAGAACAGCGCTTCCGTCGTTTCACGTGTCGTG
TTTCTCACTACCGTTTCATGTCTTCATCAACAACTCATCTACCAACACAC
TTTGGTTGACTTGATCGAACAAAAATGGATGAGTCTAAATCTCCACCACT
TCCAATAGTCTGGGGAGACGTGAACGAGAAGAATGTGAATCAACTTGAAA
TTCTCAACACCACAATTTTCCCTGTCAAATATAATGACATGTTCTACAAA
GAAGTGTTAAAAGCGCCGGATGGGTTCGTCAAGCTTGCTTACTACAACGA
GCTATTAGTCGGAGGCGTTAGTTGCCGAAAGGAACCATATTTTCCATTCC
AAATTGCGCTTGAAAAGCAAAAGTCATCGCACATAAAACCCGCGGAACCA
TACACTACCAACGACGCTAGTTTGTACATAATGACCTTAGGAGTTTTAGC
TCCCTATCGCGAAAGAGGAATCGGTCATCGCCTCATCACTCATGTTTTGG
ATCTTGTCGAATCCTCTCCTGCATGCAAGGATGTTGTTGACATATATCTT
CACCTGCAGGAAGGGAACGATGATGCGTTGCGATTTTACAGGCGATACGG
GTTTGAAGTGACTGAACATATTCAAGGGTATTACAAACGACTTGTTCCTC
CCAACTGCTACGTCGTTCGAAAGAAGGTTACTAGACAGACATAG
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Coding sequence (CDS) from alignment at NODE_240_length_34680_cov_4.545549:24139..25682+

>Gcaud7643.t1 ID=Gcaud7643.t1|Name=Gcaud7643.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=687bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:24139..25682+ (Gracilaria caudata M_176_S67 male)
ATGTTCTTGCTTCGTCCCCCTTCTAACATTATAACATATCATCACCCAAC
CATTACGTCTTTTGGTCCTACAACAATACCTCATCGTGCTTACCGTCCCC
ATACAAAACTCCATTCTCAGAGAATCTATAAACCAAACTGCAGTACCCCT
TTCTGGGGAGACGTGAACGAGAAGAATGTGAATCAACTTGAAATTCTCAA
CACCACAATTTTCCCTGTCAAATATAATGACATGTTCTACAAAGAAGTGT
TAAAAGCGCCGGATGGGTTCGTCAAGCTTGCTTACTACAACGAGCTATTA
GTCGGAGGCGTTAGTTGCCGAAAGGAACCATATTTTCCATTCCAAATTGC
GCTTGAAAAGCAAAAGTCATCGCACATAAAACCCGCGGAACCATACACTA
CCAACGACGCTAGTTTGTACATAATGACCTTAGGAGTTTTAGCTCCCTAT
CGCGAAAGAGGAATCGGTCATCGCCTCATCACTCATGTTTTGGATCTTGT
CGAATCCTCTCCTGCATGCAAGGATGTTGTTGACATATATCTTCACCTGC
AGGAAGGGAACGATGATGCGTTGCGATTTTACAGGCGATACGGGTTTGAA
GTGACTGAACATATTCAAGGGTATTACAAACGACTTGTTCCTCCCAACTG
CTACGTCGTTCGAAAGAAGGTTACTAGACAGACATAG
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