Gcaud7638.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7638.t1
Unique Name	Gcaud7638.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_240_length_34680_cov_4.545549	contig	NODE_240_length_34680_cov_4.545549:6433..8070 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7638	Gcaud7638	Gracilaria caudata M_176_S67 male	gene	NODE_240_length_34680_cov_4.545549 6433..8070 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7638.t1.stop1	Gcaud7638.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_240_length_34680_cov_4.545549 6433..6435 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7638.t1.CDS1	Gcaud7638.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_240_length_34680_cov_4.545549 6433..8070 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7638.t1.exon1	Gcaud7638.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_240_length_34680_cov_4.545549 6433..8070 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7638.t1.start1	Gcaud7638.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_240_length_34680_cov_4.545549 8068..8070 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7638.t1	Gcaud7638.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_240_length_34680_cov_4.545549 6433..8070 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_240_length_34680_cov_4.545549:6433..8070-
coding sequence from alignment at NODE_240_length_34680_cov_4.545549:6433..8070-

mRNA sequence

>Gcaud7638.t1 ID=Gcaud7638.t1|Name=Gcaud7638.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=546bp
MSPTSTKFDARPSQYFEKAVVWLLGLSFGEHDDGAERTAVSLKIGEIINI
WVSGLLAADFPADEVENTFSSFSKLIQTEDIPELINWSVISISDVDRLIH
VHWVRAARNMIELPLPPAKPLELAIDSLNVALKLLDCIAAKDNRRSAAAN
TAPGHLVFSTLRLFISAEHQNDQRSSNVRDLCDKSLSHLCRMRRSENKSQ
LLSSLLNHVIPLIRDAAQVDLSSFKAPYTAHDAAPTSHVLHSLLCEADEN
KLNEAAGEVLPILRELVESVPESIRVQSLHSISLLSSRLPTSVMEPQRTS
KSLQAALSWGDVPTSMIALPLLATFLPKTKPMDSRGEEYFASISKVIETI
VRHMQARDQRPDSNAQDLSRLESAKAVVVLSTFVPSLLQDLMLCRIDWIL
SLSAFLRQLGSFVKCGALTAADVTQTLAVLQESIKWAWLRVDSFRKEVFE
GCLSLLMETKTIPGSFRIQAAIRDVVLQLGKCGQEERLIELAQEVRSCAK
HYESLAVATELCKEVENIVAIEGKTDSHSSIMAGSLVERFFPELR*

spliced messenger RNA

>Gcaud7638.t1 ID=Gcaud7638.t1|Name=Gcaud7638.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:6433..8070- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCAACCTCTACCAAGTTCGACGCACGTCCATCCCAGTATTTTGA
GAAAGCAGTAGTTTGGCTTCTGGGTCTCTCGTTTGGCGAACACGACGATG
GTGCTGAACGTACTGCTGTTTCGCTTAAGATTGGGGAAATAATCAACATT
TGGGTCAGTGGTCTATTGGCTGCAGATTTCCCGGCCGACGAAGTTGAAAA
CACCTTTTCTAGCTTCTCCAAACTTATTCAAACAGAGGATATTCCTGAAC
TAATCAACTGGTCTGTGATTTCGATTTCAGATGTAGACAGACTCATACAT
GTTCACTGGGTTCGGGCTGCCCGGAACATGATTGAACTTCCGCTACCACC
AGCCAAGCCTCTGGAACTAGCTATTGATTCTCTTAATGTCGCTTTGAAGC
TTCTTGACTGTATCGCCGCAAAGGATAATCGACGCTCGGCGGCTGCGAAT
ACAGCCCCCGGTCATCTCGTTTTTTCCACATTGCGTCTCTTCATATCCGC
AGAACACCAAAATGATCAACGAAGTTCAAATGTGCGTGATCTTTGTGACA
AGTCCTTGTCTCATTTATGTCGAATGCGACGGTCTGAGAATAAATCCCAG
CTACTCTCATCTCTTCTTAACCACGTGATACCTTTGATACGTGACGCAGC
TCAGGTCGACCTCAGTTCTTTTAAGGCACCGTACACGGCACATGATGCCG
CTCCAACCTCGCATGTGTTACACAGTCTGTTGTGTGAAGCGGATGAAAAT
AAGCTAAATGAGGCTGCAGGGGAGGTGTTGCCAATCTTGCGGGAACTCGT
TGAGAGCGTTCCAGAATCGATACGAGTACAATCGTTACATTCAATATCTC
TGCTCTCTTCCCGTCTTCCTACATCCGTCATGGAACCACAACGCACATCA
AAATCGCTTCAAGCGGCATTATCATGGGGCGATGTCCCAACGTCAATGAT
TGCTCTCCCGTTATTGGCGACGTTCTTACCAAAGACGAAGCCGATGGATT
CACGAGGGGAAGAATATTTCGCTTCGATATCCAAGGTGATTGAAACCATA
GTACGTCACATGCAGGCTCGAGATCAACGCCCGGATTCAAATGCCCAGGA
CTTGTCAAGACTTGAAAGTGCAAAGGCTGTCGTTGTATTATCAACATTTG
TTCCATCATTGTTACAAGATTTGATGTTGTGCCGTATTGACTGGATCCTT
TCGTTGTCTGCTTTTCTTCGGCAACTGGGAAGTTTTGTCAAGTGCGGGGC
TCTAACGGCAGCAGACGTTACACAAACCCTCGCAGTTCTTCAGGAATCCA
TAAAGTGGGCATGGCTTCGAGTGGATTCGTTTAGGAAGGAAGTGTTCGAA
GGCTGTCTCTCTTTACTCATGGAAACCAAAACCATACCGGGCTCATTCAG
GATTCAGGCCGCGATACGGGATGTGGTTTTGCAGCTTGGGAAATGTGGTC
AAGAAGAACGATTGATAGAACTGGCGCAAGAAGTTCGTTCCTGTGCGAAG
CATTACGAAAGCCTAGCGGTGGCAACCGAACTTTGCAAGGAGGTTGAGAA
CATAGTCGCCATCGAAGGGAAGACCGACAGTCACAGCAGCATTATGGCTG
GATCTCTCGTCGAAAGATTTTTCCCTGAGCTTAGATGA

protein sequence of Gcaud7638.t1

>Gcaud7638.t1 ID=Gcaud7638.t1|Name=Gcaud7638.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=546bp
MSPTSTKFDARPSQYFEKAVVWLLGLSFGEHDDGAERTAVSLKIGEIINI
WVSGLLAADFPADEVENTFSSFSKLIQTEDIPELINWSVISISDVDRLIH
VHWVRAARNMIELPLPPAKPLELAIDSLNVALKLLDCIAAKDNRRSAAAN
TAPGHLVFSTLRLFISAEHQNDQRSSNVRDLCDKSLSHLCRMRRSENKSQ
LLSSLLNHVIPLIRDAAQVDLSSFKAPYTAHDAAPTSHVLHSLLCEADEN
KLNEAAGEVLPILRELVESVPESIRVQSLHSISLLSSRLPTSVMEPQRTS
KSLQAALSWGDVPTSMIALPLLATFLPKTKPMDSRGEEYFASISKVIETI
VRHMQARDQRPDSNAQDLSRLESAKAVVVLSTFVPSLLQDLMLCRIDWIL
SLSAFLRQLGSFVKCGALTAADVTQTLAVLQESIKWAWLRVDSFRKEVFE
GCLSLLMETKTIPGSFRIQAAIRDVVLQLGKCGQEERLIELAQEVRSCAK
HYESLAVATELCKEVENIVAIEGKTDSHSSIMAGSLVERFFPELR*

mRNA from alignment at NODE_240_length_34680_cov_4.545549:6433..8070-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7638.t1 ID=Gcaud7638.t1|Name=Gcaud7638.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:6433..8070- (Gracilaria caudata M_176_S67 male)
ATGTCTCCAACCTCTACCAAGTTCGACGCACGTCCATCCCAGTATTTTGA
GAAAGCAGTAGTTTGGCTTCTGGGTCTCTCGTTTGGCGAACACGACGATG
GTGCTGAACGTACTGCTGTTTCGCTTAAGATTGGGGAAATAATCAACATT
TGGGTCAGTGGTCTATTGGCTGCAGATTTCCCGGCCGACGAAGTTGAAAA
CACCTTTTCTAGCTTCTCCAAACTTATTCAAACAGAGGATATTCCTGAAC
TAATCAACTGGTCTGTGATTTCGATTTCAGATGTAGACAGACTCATACAT
GTTCACTGGGTTCGGGCTGCCCGGAACATGATTGAACTTCCGCTACCACC
AGCCAAGCCTCTGGAACTAGCTATTGATTCTCTTAATGTCGCTTTGAAGC
TTCTTGACTGTATCGCCGCAAAGGATAATCGACGCTCGGCGGCTGCGAAT
ACAGCCCCCGGTCATCTCGTTTTTTCCACATTGCGTCTCTTCATATCCGC
AGAACACCAAAATGATCAACGAAGTTCAAATGTGCGTGATCTTTGTGACA
AGTCCTTGTCTCATTTATGTCGAATGCGACGGTCTGAGAATAAATCCCAG
CTACTCTCATCTCTTCTTAACCACGTGATACCTTTGATACGTGACGCAGC
TCAGGTCGACCTCAGTTCTTTTAAGGCACCGTACACGGCACATGATGCCG
CTCCAACCTCGCATGTGTTACACAGTCTGTTGTGTGAAGCGGATGAAAAT
AAGCTAAATGAGGCTGCAGGGGAGGTGTTGCCAATCTTGCGGGAACTCGT
TGAGAGCGTTCCAGAATCGATACGAGTACAATCGTTACATTCAATATCTC
TGCTCTCTTCCCGTCTTCCTACATCCGTCATGGAACCACAACGCACATCA
AAATCGCTTCAAGCGGCATTATCATGGGGCGATGTCCCAACGTCAATGAT
TGCTCTCCCGTTATTGGCGACGTTCTTACCAAAGACGAAGCCGATGGATT
CACGAGGGGAAGAATATTTCGCTTCGATATCCAAGGTGATTGAAACCATA
GTACGTCACATGCAGGCTCGAGATCAACGCCCGGATTCAAATGCCCAGGA
CTTGTCAAGACTTGAAAGTGCAAAGGCTGTCGTTGTATTATCAACATTTG
TTCCATCATTGTTACAAGATTTGATGTTGTGCCGTATTGACTGGATCCTT
TCGTTGTCTGCTTTTCTTCGGCAACTGGGAAGTTTTGTCAAGTGCGGGGC
TCTAACGGCAGCAGACGTTACACAAACCCTCGCAGTTCTTCAGGAATCCA
TAAAGTGGGCATGGCTTCGAGTGGATTCGTTTAGGAAGGAAGTGTTCGAA
GGCTGTCTCTCTTTACTCATGGAAACCAAAACCATACCGGGCTCATTCAG
GATTCAGGCCGCGATACGGGATGTGGTTTTGCAGCTTGGGAAATGTGGTC
AAGAAGAACGATTGATAGAACTGGCGCAAGAAGTTCGTTCCTGTGCGAAG
CATTACGAAAGCCTAGCGGTGGCAACCGAACTTTGCAAGGAGGTTGAGAA
CATAGTCGCCATCGAAGGGAAGACCGACAGTCACAGCAGCATTATGGCTG
GATCTCTCGTCGAAAGATTTTTCCCTGAGCTTAGATGA

Coding sequence (CDS) from alignment at NODE_240_length_34680_cov_4.545549:6433..8070-

>Gcaud7638.t1 ID=Gcaud7638.t1|Name=Gcaud7638.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1638bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:6433..8070- (Gracilaria caudata M_176_S67 male)
ATGTCTCCAACCTCTACCAAGTTCGACGCACGTCCATCCCAGTATTTTGA
GAAAGCAGTAGTTTGGCTTCTGGGTCTCTCGTTTGGCGAACACGACGATG
GTGCTGAACGTACTGCTGTTTCGCTTAAGATTGGGGAAATAATCAACATT
TGGGTCAGTGGTCTATTGGCTGCAGATTTCCCGGCCGACGAAGTTGAAAA
CACCTTTTCTAGCTTCTCCAAACTTATTCAAACAGAGGATATTCCTGAAC
TAATCAACTGGTCTGTGATTTCGATTTCAGATGTAGACAGACTCATACAT
GTTCACTGGGTTCGGGCTGCCCGGAACATGATTGAACTTCCGCTACCACC
AGCCAAGCCTCTGGAACTAGCTATTGATTCTCTTAATGTCGCTTTGAAGC
TTCTTGACTGTATCGCCGCAAAGGATAATCGACGCTCGGCGGCTGCGAAT
ACAGCCCCCGGTCATCTCGTTTTTTCCACATTGCGTCTCTTCATATCCGC
AGAACACCAAAATGATCAACGAAGTTCAAATGTGCGTGATCTTTGTGACA
AGTCCTTGTCTCATTTATGTCGAATGCGACGGTCTGAGAATAAATCCCAG
CTACTCTCATCTCTTCTTAACCACGTGATACCTTTGATACGTGACGCAGC
TCAGGTCGACCTCAGTTCTTTTAAGGCACCGTACACGGCACATGATGCCG
CTCCAACCTCGCATGTGTTACACAGTCTGTTGTGTGAAGCGGATGAAAAT
AAGCTAAATGAGGCTGCAGGGGAGGTGTTGCCAATCTTGCGGGAACTCGT
TGAGAGCGTTCCAGAATCGATACGAGTACAATCGTTACATTCAATATCTC
TGCTCTCTTCCCGTCTTCCTACATCCGTCATGGAACCACAACGCACATCA
AAATCGCTTCAAGCGGCATTATCATGGGGCGATGTCCCAACGTCAATGAT
TGCTCTCCCGTTATTGGCGACGTTCTTACCAAAGACGAAGCCGATGGATT
CACGAGGGGAAGAATATTTCGCTTCGATATCCAAGGTGATTGAAACCATA
GTACGTCACATGCAGGCTCGAGATCAACGCCCGGATTCAAATGCCCAGGA
CTTGTCAAGACTTGAAAGTGCAAAGGCTGTCGTTGTATTATCAACATTTG
TTCCATCATTGTTACAAGATTTGATGTTGTGCCGTATTGACTGGATCCTT
TCGTTGTCTGCTTTTCTTCGGCAACTGGGAAGTTTTGTCAAGTGCGGGGC
TCTAACGGCAGCAGACGTTACACAAACCCTCGCAGTTCTTCAGGAATCCA
TAAAGTGGGCATGGCTTCGAGTGGATTCGTTTAGGAAGGAAGTGTTCGAA
GGCTGTCTCTCTTTACTCATGGAAACCAAAACCATACCGGGCTCATTCAG
GATTCAGGCCGCGATACGGGATGTGGTTTTGCAGCTTGGGAAATGTGGTC
AAGAAGAACGATTGATAGAACTGGCGCAAGAAGTTCGTTCCTGTGCGAAG
CATTACGAAAGCCTAGCGGTGGCAACCGAACTTTGCAAGGAGGTTGAGAA
CATAGTCGCCATCGAAGGGAAGACCGACAGTCACAGCAGCATTATGGCTG
GATCTCTCGTCGAAAGATTTTTCCCTGAGCTTAGATGA