Gcaud7632.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7632.t1
Unique NameGcaud7632.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1171_length_13094_cov_3.447051contigNODE_1171_length_13094_cov_3.447051:11722..12108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5691.AAZ12179
PFAMsGSHPx
Max annot lvl5653|Kinetoplastida
KEGG rclassRC01872
KEGG koko:K11207
KEGG ReactionR08360
KEGG Pathwayko00480,map00480
Evalue3.39e-20
EggNOG OGsCOG0386@1|root,KOG1651@2759|Eukaryota,3XUK9@5653|Kinetoplastida
DescriptionBelongs to the glutathione peroxidase family
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7632Gcaud7632Gracilaria caudata M_176_S67 malegeneNODE_1171_length_13094_cov_3.447051 11722..12108 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7632.t1.stop1Gcaud7632.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1171_length_13094_cov_3.447051 11722..11724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7632.t1.CDS1Gcaud7632.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1171_length_13094_cov_3.447051 11722..12108 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7632.t1.exon1Gcaud7632.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1171_length_13094_cov_3.447051 11722..12108 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7632.t1.start1Gcaud7632.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1171_length_13094_cov_3.447051 12106..12108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7632.t1Gcaud7632.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1171_length_13094_cov_3.447051 11722..12108 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7632.t1 ID=Gcaud7632.t1|Name=Gcaud7632.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=129bp
MNVASACGYTQSGYALFNKLLRKYEREPFVAVAIPCNAFGWQESGSSEQI
KAFAQQRARGLLLMERSQVNGDAQHEMVKVAKSRFPGRIAWNFDGRYVFD
RAGVPVARFGNSASDAQIEAAIDAALAA*
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spliced messenger RNA

>Gcaud7632.t1 ID=Gcaud7632.t1|Name=Gcaud7632.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=387bp|location=Sequence derived from alignment at NODE_1171_length_13094_cov_3.447051:11722..12108- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTCGCGTCCGCATGCGGCTACACGCAATCCGGCTACGCGCTGTT
CAACAAGCTACTGCGCAAATACGAGCGCGAGCCATTTGTGGCGGTGGCCA
TTCCGTGCAACGCGTTTGGGTGGCAGGAGAGCGGCTCTTCCGAACAGATC
AAGGCGTTTGCGCAGCAGCGTGCGCGCGGGTTGCTGCTCATGGAGCGATC
GCAGGTGAATGGTGACGCGCAACATGAGATGGTGAAGGTGGCGAAGAGCC
GCTTTCCGGGGCGCATTGCGTGGAACTTTGATGGGCGCTACGTGTTTGAC
CGCGCGGGCGTGCCGGTGGCGCGCTTTGGCAACTCGGCGAGCGACGCGCA
GATCGAGGCGGCCATTGACGCCGCGCTCGCCGCGTGA
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protein sequence of Gcaud7632.t1

>Gcaud7632.t1 ID=Gcaud7632.t1|Name=Gcaud7632.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=129bp
MNVASACGYTQSGYALFNKLLRKYEREPFVAVAIPCNAFGWQESGSSEQI
KAFAQQRARGLLLMERSQVNGDAQHEMVKVAKSRFPGRIAWNFDGRYVFD
RAGVPVARFGNSASDAQIEAAIDAALAA*
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mRNA from alignment at NODE_1171_length_13094_cov_3.447051:11722..12108-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7632.t1 ID=Gcaud7632.t1|Name=Gcaud7632.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=387bp|location=Sequence derived from alignment at NODE_1171_length_13094_cov_3.447051:11722..12108- (Gracilaria caudata M_176_S67 male)
ATGAACGTCGCGTCCGCATGCGGCTACACGCAATCCGGCTACGCGCTGTT
CAACAAGCTACTGCGCAAATACGAGCGCGAGCCATTTGTGGCGGTGGCCA
TTCCGTGCAACGCGTTTGGGTGGCAGGAGAGCGGCTCTTCCGAACAGATC
AAGGCGTTTGCGCAGCAGCGTGCGCGCGGGTTGCTGCTCATGGAGCGATC
GCAGGTGAATGGTGACGCGCAACATGAGATGGTGAAGGTGGCGAAGAGCC
GCTTTCCGGGGCGCATTGCGTGGAACTTTGATGGGCGCTACGTGTTTGAC
CGCGCGGGCGTGCCGGTGGCGCGCTTTGGCAACTCGGCGAGCGACGCGCA
GATCGAGGCGGCCATTGACGCCGCGCTCGCCGCGTGA
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Coding sequence (CDS) from alignment at NODE_1171_length_13094_cov_3.447051:11722..12108-

>Gcaud7632.t1 ID=Gcaud7632.t1|Name=Gcaud7632.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=387bp|location=Sequence derived from alignment at NODE_1171_length_13094_cov_3.447051:11722..12108- (Gracilaria caudata M_176_S67 male)
ATGAACGTCGCGTCCGCATGCGGCTACACGCAATCCGGCTACGCGCTGTT
CAACAAGCTACTGCGCAAATACGAGCGCGAGCCATTTGTGGCGGTGGCCA
TTCCGTGCAACGCGTTTGGGTGGCAGGAGAGCGGCTCTTCCGAACAGATC
AAGGCGTTTGCGCAGCAGCGTGCGCGCGGGTTGCTGCTCATGGAGCGATC
GCAGGTGAATGGTGACGCGCAACATGAGATGGTGAAGGTGGCGAAGAGCC
GCTTTCCGGGGCGCATTGCGTGGAACTTTGATGGGCGCTACGTGTTTGAC
CGCGCGGGCGTGCCGGTGGCGCGCTTTGGCAACTCGGCGAGCGACGCGCA
GATCGAGGCGGCCATTGACGCCGCGCTCGCCGCGTGA
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