Gcaud7630.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7630.t1
Unique Name	Gcaud7630.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_534_length_22701_cov_4.725210	contig	NODE_534_length_22701_cov_4.725210:20113..21165 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4098.XP_009610155.1
PFAMs	HhH-GPD,NUDIX_4
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03575
KEGG Pathway	ko03410,map03410
GOs	GO:0000700,GO:0000701,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0032404,GO:0032407,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360
Evalue	1.38e-59
EggNOG OGs	COG1194@1\|root,KOG2457@2759\|Eukaryota,37J9G@33090\|Viridiplantae,3GERX@35493\|Streptophyta,44J3H@71274\|asterids
Description	A G-specific adenine
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7630	Gcaud7630	Gracilaria caudata M_176_S67 male	gene	NODE_534_length_22701_cov_4.725210 20113..21165 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7630.t1.start1	Gcaud7630.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_534_length_22701_cov_4.725210 20113..20115 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7630.t1.CDS1	Gcaud7630.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_534_length_22701_cov_4.725210 20113..21165 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7630.t1.exon1	Gcaud7630.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_534_length_22701_cov_4.725210 20113..21165 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7630.t1.stop1	Gcaud7630.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_534_length_22701_cov_4.725210 21163..21165 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7630.t1	Gcaud7630.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_534_length_22701_cov_4.725210 20113..21165 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_534_length_22701_cov_4.725210:20113..21165+
coding sequence from alignment at NODE_534_length_22701_cov_4.725210:20113..21165+

mRNA sequence

>Gcaud7630.t1 ID=Gcaud7630.t1|Name=Gcaud7630.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp
MMSQQTRISVVIQYYERWMKQFPSVQHLAEASLNEVYEVWAGLGYYRRAR
FVHEAAKQIVELHDGVIPQHVQELTKLSGIGMYTAGAISSIAYGHAVPLV
DGNVQRVFSRLRTDVTKSITNQNELSRGYWRLASTCVNEIENAGDFNQAL
MELGATVCKPKAALCEQCPLNSMCEAFEEATVARVKASEYVTRYPVRYKQ
KRTKVRNETVVALVVCNVNAHNGTRRLLTRVREGNGLLGGLLETANVVVS
NDDAHSVQSAVQTLLNELRASGQVRDVEVDGERVVDGGTIKHVFSHIVQK
IHIKVLAVDGTCSGASTATTGAAWISETQLHSCAVSTQMKKVMLAALKRV
*

spliced messenger RNA

>Gcaud7630.t1 ID=Gcaud7630.t1|Name=Gcaud7630.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_534_length_22701_cov_4.725210:20113..21165+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAGTCAACAAACTCGAATCTCCGTAGTGATTCAATACTATGAGCG
CTGGATGAAACAATTTCCTAGCGTGCAGCACTTGGCAGAAGCTTCTTTAA
ACGAAGTTTACGAGGTGTGGGCAGGGCTTGGTTATTATAGACGCGCTAGA
TTTGTACATGAGGCGGCAAAACAGATTGTCGAATTGCATGATGGTGTGAT
ACCACAACATGTGCAAGAGCTCACAAAACTTTCGGGCATTGGTATGTATA
CAGCTGGTGCCATCAGTTCGATTGCTTATGGACATGCTGTACCGCTGGTT
GATGGAAATGTGCAACGCGTGTTCTCAAGATTGCGTACTGATGTTACGAA
AAGTATCACAAATCAGAATGAGTTGTCTCGAGGGTACTGGAGATTAGCTT
CTACGTGCGTGAATGAGATTGAGAATGCGGGCGATTTCAATCAGGCGTTG
ATGGAACTTGGTGCAACCGTTTGCAAACCGAAGGCAGCATTATGTGAACA
ATGTCCGCTAAACAGCATGTGCGAAGCTTTCGAAGAAGCCACTGTGGCAC
GCGTAAAAGCTTCCGAATATGTTACAAGATACCCTGTGAGATACAAACAA
AAGCGCACAAAGGTGAGAAACGAGACAGTTGTGGCGCTGGTTGTCTGCAA
CGTGAACGCACACAACGGAACGCGACGGCTTTTAACGAGAGTGAGGGAGG
GTAATGGTTTACTGGGCGGGCTGTTGGAAACTGCGAACGTGGTGGTGTCC
AACGACGACGCTCACAGCGTGCAGAGCGCGGTACAGACGCTGCTGAACGA
GCTGCGAGCGAGTGGGCAGGTGCGTGATGTAGAGGTGGATGGTGAACGAG
TTGTTGACGGTGGAACGATCAAACATGTGTTCTCACATATCGTGCAGAAG
ATTCATATCAAGGTGTTGGCGGTGGACGGCACGTGTAGTGGCGCTTCGAC
TGCGACGACGGGCGCGGCTTGGATCAGCGAGACGCAGCTGCACAGCTGCG
CGGTTTCTACACAAATGAAAAAAGTGATGCTTGCCGCGTTAAAGCGTGTG
TAG

protein sequence of Gcaud7630.t1

>Gcaud7630.t1 ID=Gcaud7630.t1|Name=Gcaud7630.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=351bp
MMSQQTRISVVIQYYERWMKQFPSVQHLAEASLNEVYEVWAGLGYYRRAR
FVHEAAKQIVELHDGVIPQHVQELTKLSGIGMYTAGAISSIAYGHAVPLV
DGNVQRVFSRLRTDVTKSITNQNELSRGYWRLASTCVNEIENAGDFNQAL
MELGATVCKPKAALCEQCPLNSMCEAFEEATVARVKASEYVTRYPVRYKQ
KRTKVRNETVVALVVCNVNAHNGTRRLLTRVREGNGLLGGLLETANVVVS
NDDAHSVQSAVQTLLNELRASGQVRDVEVDGERVVDGGTIKHVFSHIVQK
IHIKVLAVDGTCSGASTATTGAAWISETQLHSCAVSTQMKKVMLAALKRV
*

mRNA from alignment at NODE_534_length_22701_cov_4.725210:20113..21165+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7630.t1 ID=Gcaud7630.t1|Name=Gcaud7630.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_534_length_22701_cov_4.725210:20113..21165+ (Gracilaria caudata M_176_S67 male)
ATGATGAGTCAACAAACTCGAATCTCCGTAGTGATTCAATACTATGAGCG
CTGGATGAAACAATTTCCTAGCGTGCAGCACTTGGCAGAAGCTTCTTTAA
ACGAAGTTTACGAGGTGTGGGCAGGGCTTGGTTATTATAGACGCGCTAGA
TTTGTACATGAGGCGGCAAAACAGATTGTCGAATTGCATGATGGTGTGAT
ACCACAACATGTGCAAGAGCTCACAAAACTTTCGGGCATTGGTATGTATA
CAGCTGGTGCCATCAGTTCGATTGCTTATGGACATGCTGTACCGCTGGTT
GATGGAAATGTGCAACGCGTGTTCTCAAGATTGCGTACTGATGTTACGAA
AAGTATCACAAATCAGAATGAGTTGTCTCGAGGGTACTGGAGATTAGCTT
CTACGTGCGTGAATGAGATTGAGAATGCGGGCGATTTCAATCAGGCGTTG
ATGGAACTTGGTGCAACCGTTTGCAAACCGAAGGCAGCATTATGTGAACA
ATGTCCGCTAAACAGCATGTGCGAAGCTTTCGAAGAAGCCACTGTGGCAC
GCGTAAAAGCTTCCGAATATGTTACAAGATACCCTGTGAGATACAAACAA
AAGCGCACAAAGGTGAGAAACGAGACAGTTGTGGCGCTGGTTGTCTGCAA
CGTGAACGCACACAACGGAACGCGACGGCTTTTAACGAGAGTGAGGGAGG
GTAATGGTTTACTGGGCGGGCTGTTGGAAACTGCGAACGTGGTGGTGTCC
AACGACGACGCTCACAGCGTGCAGAGCGCGGTACAGACGCTGCTGAACGA
GCTGCGAGCGAGTGGGCAGGTGCGTGATGTAGAGGTGGATGGTGAACGAG
TTGTTGACGGTGGAACGATCAAACATGTGTTCTCACATATCGTGCAGAAG
ATTCATATCAAGGTGTTGGCGGTGGACGGCACGTGTAGTGGCGCTTCGAC
TGCGACGACGGGCGCGGCTTGGATCAGCGAGACGCAGCTGCACAGCTGCG
CGGTTTCTACACAAATGAAAAAAGTGATGCTTGCCGCGTTAAAGCGTGTG
TAG

Coding sequence (CDS) from alignment at NODE_534_length_22701_cov_4.725210:20113..21165+

>Gcaud7630.t1 ID=Gcaud7630.t1|Name=Gcaud7630.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1053bp|location=Sequence derived from alignment at NODE_534_length_22701_cov_4.725210:20113..21165+ (Gracilaria caudata M_176_S67 male)
ATGATGAGTCAACAAACTCGAATCTCCGTAGTGATTCAATACTATGAGCG
CTGGATGAAACAATTTCCTAGCGTGCAGCACTTGGCAGAAGCTTCTTTAA
ACGAAGTTTACGAGGTGTGGGCAGGGCTTGGTTATTATAGACGCGCTAGA
TTTGTACATGAGGCGGCAAAACAGATTGTCGAATTGCATGATGGTGTGAT
ACCACAACATGTGCAAGAGCTCACAAAACTTTCGGGCATTGGTATGTATA
CAGCTGGTGCCATCAGTTCGATTGCTTATGGACATGCTGTACCGCTGGTT
GATGGAAATGTGCAACGCGTGTTCTCAAGATTGCGTACTGATGTTACGAA
AAGTATCACAAATCAGAATGAGTTGTCTCGAGGGTACTGGAGATTAGCTT
CTACGTGCGTGAATGAGATTGAGAATGCGGGCGATTTCAATCAGGCGTTG
ATGGAACTTGGTGCAACCGTTTGCAAACCGAAGGCAGCATTATGTGAACA
ATGTCCGCTAAACAGCATGTGCGAAGCTTTCGAAGAAGCCACTGTGGCAC
GCGTAAAAGCTTCCGAATATGTTACAAGATACCCTGTGAGATACAAACAA
AAGCGCACAAAGGTGAGAAACGAGACAGTTGTGGCGCTGGTTGTCTGCAA
CGTGAACGCACACAACGGAACGCGACGGCTTTTAACGAGAGTGAGGGAGG
GTAATGGTTTACTGGGCGGGCTGTTGGAAACTGCGAACGTGGTGGTGTCC
AACGACGACGCTCACAGCGTGCAGAGCGCGGTACAGACGCTGCTGAACGA
GCTGCGAGCGAGTGGGCAGGTGCGTGATGTAGAGGTGGATGGTGAACGAG
TTGTTGACGGTGGAACGATCAAACATGTGTTCTCACATATCGTGCAGAAG
ATTCATATCAAGGTGTTGGCGGTGGACGGCACGTGTAGTGGCGCTTCGAC
TGCGACGACGGGCGCGGCTTGGATCAGCGAGACGCAGCTGCACAGCTGCG
CGGTTTCTACACAAATGAAAAAAGTGATGCTTGCCGCGTTAAAGCGTGTG
TAG