Gcaud763.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud763.t1
Unique Name	Gcaud763.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	480

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3449_length_3431_cov_9.984132	contig	NODE_3449_length_3431_cov_9.984132:1388..2827 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud763	Gcaud763	Gracilaria caudata M_176_S67 male	gene	NODE_3449_length_3431_cov_9.984132 1388..2827 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud763.t1.CDS1	Gcaud763.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3449_length_3431_cov_9.984132 1388..2827 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud763.t1.exon1	Gcaud763.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3449_length_3431_cov_9.984132 1388..2827 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud763.t1.stop1	Gcaud763.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3449_length_3431_cov_9.984132 2825..2827 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud763.t1	Gcaud763.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3449_length_3431_cov_9.984132 1388..2827 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3449_length_3431_cov_9.984132:1388..2827+
coding sequence from alignment at NODE_3449_length_3431_cov_9.984132:1388..2827+

mRNA sequence

>Gcaud763.t1 ID=Gcaud763.t1|Name=Gcaud763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp
RVSEVWLGARQFASKTEEVAACTRAFEVIRARVKLDAAARSVCALDIGVS
NTLPPGTASVAASATRDPAASQLVPPFAPLQRRAPRRFLTLSPPPNLKDP
LNGMRMGPAASSTYRATSSWGFDRNGSSKRPRLTYATTSDSLVFIQESSF
AGGDWRIGARDGDGCKTTSRSVQNTETDSIDRYSGTAAAAVAWALTREVV
ERRLKRDSPIRAFYRASVFAQMHHMRTSEDSDLHLESASRVLLRVKCEPL
PVRRAELLLRGYDVWQVRLSSLPSIFDSTNSVVTPSGRPKPLTNSKSRET
GNLWSVGVSCTGSQLTFTYPSANPESVCSFSRDLTRARTAAALARGVHPS
RFYRVIRRSPVHIVVGIGPYGPNQGVTAPGVPPPKPQYTATAEYVYSKGN
SGGFSLSFSPTKPTMDQLAPYIEEALDASGGQAGAILAGLLERACSVVAA
AESAVKEKKNGRTRFLTALKSARNVQRRS*

spliced messenger RNA

>Gcaud763.t1 ID=Gcaud763.t1|Name=Gcaud763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_3449_length_3431_cov_9.984132:1388..2827+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AGAGTTTCAGAAGTCTGGCTGGGTGCCCGTCAGTTTGCATCCAAAACAGA
AGAAGTAGCGGCATGCACTCGTGCTTTTGAAGTGATCCGCGCGAGGGTGA
AGCTTGATGCGGCGGCTAGATCCGTCTGCGCTTTGGACATTGGCGTTTCC
AATACGTTACCTCCTGGCACGGCATCGGTCGCTGCCTCGGCGACGCGAGA
TCCTGCAGCGAGTCAGCTTGTTCCCCCGTTTGCGCCTTTGCAACGAAGAG
CTCCAAGGAGGTTTTTGACCCTGTCACCACCACCCAACCTCAAAGATCCG
CTGAACGGTATGAGAATGGGACCGGCCGCGTCGTCGACGTACCGCGCAAC
AAGTTCTTGGGGATTCGACAGGAACGGATCCTCAAAACGTCCGCGATTGA
CCTATGCGACAACCAGCGATTCACTCGTCTTTATCCAAGAAAGCTCATTT
GCTGGCGGTGACTGGCGAATTGGTGCGCGAGATGGGGACGGGTGCAAAAC
GACATCTCGGTCTGTTCAAAACACAGAGACAGATAGTATCGATAGGTACA
GTGGTACGGCAGCTGCAGCCGTGGCATGGGCTTTGACAAGAGAGGTTGTG
GAAAGACGACTGAAGCGCGACTCTCCTATACGAGCGTTCTATAGAGCCAG
CGTTTTTGCCCAAATGCATCACATGCGAACGAGCGAAGACAGCGACTTGC
ATCTGGAATCAGCATCTCGCGTCCTGCTTCGCGTGAAGTGTGAGCCACTG
CCAGTAAGGAGAGCGGAGCTTTTGCTTAGAGGTTATGATGTTTGGCAAGT
CCGGCTGTCGTCACTACCGTCAATATTTGACAGCACCAATTCGGTCGTTA
CACCGTCTGGGAGACCTAAACCGCTTACTAACTCAAAATCGCGGGAGACT
GGGAATTTGTGGTCCGTTGGAGTATCATGTACCGGATCTCAATTGACATT
CACATATCCATCAGCAAACCCTGAATCGGTGTGTAGCTTCTCCCGTGATT
TGACCCGAGCTCGAACAGCCGCAGCACTTGCTCGCGGTGTTCATCCGTCA
CGGTTTTACAGGGTTATAAGGCGCTCACCCGTACACATTGTCGTCGGTAT
AGGACCATACGGGCCGAACCAAGGGGTAACTGCTCCAGGCGTCCCGCCGC
CAAAACCTCAGTACACTGCAACTGCAGAATATGTCTATTCAAAGGGGAAC
AGTGGTGGATTTAGTCTTTCGTTTTCGCCTACGAAACCGACAATGGACCA
GTTGGCACCGTACATCGAAGAGGCACTTGATGCATCTGGAGGACAGGCAG
GGGCTATTCTTGCAGGTTTATTAGAAAGAGCATGTTCGGTGGTGGCGGCA
GCCGAAAGCGCAGTGAAAGAGAAGAAGAATGGCAGAACCCGTTTCCTGAC
GGCTCTTAAGAGTGCGCGCAATGTTCAGCGGCGATCCTGA

protein sequence of Gcaud763.t1

>Gcaud763.t1 ID=Gcaud763.t1|Name=Gcaud763.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=480bp
RVSEVWLGARQFASKTEEVAACTRAFEVIRARVKLDAAARSVCALDIGVS
NTLPPGTASVAASATRDPAASQLVPPFAPLQRRAPRRFLTLSPPPNLKDP
LNGMRMGPAASSTYRATSSWGFDRNGSSKRPRLTYATTSDSLVFIQESSF
AGGDWRIGARDGDGCKTTSRSVQNTETDSIDRYSGTAAAAVAWALTREVV
ERRLKRDSPIRAFYRASVFAQMHHMRTSEDSDLHLESASRVLLRVKCEPL
PVRRAELLLRGYDVWQVRLSSLPSIFDSTNSVVTPSGRPKPLTNSKSRET
GNLWSVGVSCTGSQLTFTYPSANPESVCSFSRDLTRARTAAALARGVHPS
RFYRVIRRSPVHIVVGIGPYGPNQGVTAPGVPPPKPQYTATAEYVYSKGN
SGGFSLSFSPTKPTMDQLAPYIEEALDASGGQAGAILAGLLERACSVVAA
AESAVKEKKNGRTRFLTALKSARNVQRRS*

mRNA from alignment at NODE_3449_length_3431_cov_9.984132:1388..2827+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud763.t1 ID=Gcaud763.t1|Name=Gcaud763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_3449_length_3431_cov_9.984132:1388..2827+ (Gracilaria caudata M_176_S67 male)
AGAGTTTCAGAAGTCTGGCTGGGTGCCCGTCAGTTTGCATCCAAAACAGA
AGAAGTAGCGGCATGCACTCGTGCTTTTGAAGTGATCCGCGCGAGGGTGA
AGCTTGATGCGGCGGCTAGATCCGTCTGCGCTTTGGACATTGGCGTTTCC
AATACGTTACCTCCTGGCACGGCATCGGTCGCTGCCTCGGCGACGCGAGA
TCCTGCAGCGAGTCAGCTTGTTCCCCCGTTTGCGCCTTTGCAACGAAGAG
CTCCAAGGAGGTTTTTGACCCTGTCACCACCACCCAACCTCAAAGATCCG
CTGAACGGTATGAGAATGGGACCGGCCGCGTCGTCGACGTACCGCGCAAC
AAGTTCTTGGGGATTCGACAGGAACGGATCCTCAAAACGTCCGCGATTGA
CCTATGCGACAACCAGCGATTCACTCGTCTTTATCCAAGAAAGCTCATTT
GCTGGCGGTGACTGGCGAATTGGTGCGCGAGATGGGGACGGGTGCAAAAC
GACATCTCGGTCTGTTCAAAACACAGAGACAGATAGTATCGATAGGTACA
GTGGTACGGCAGCTGCAGCCGTGGCATGGGCTTTGACAAGAGAGGTTGTG
GAAAGACGACTGAAGCGCGACTCTCCTATACGAGCGTTCTATAGAGCCAG
CGTTTTTGCCCAAATGCATCACATGCGAACGAGCGAAGACAGCGACTTGC
ATCTGGAATCAGCATCTCGCGTCCTGCTTCGCGTGAAGTGTGAGCCACTG
CCAGTAAGGAGAGCGGAGCTTTTGCTTAGAGGTTATGATGTTTGGCAAGT
CCGGCTGTCGTCACTACCGTCAATATTTGACAGCACCAATTCGGTCGTTA
CACCGTCTGGGAGACCTAAACCGCTTACTAACTCAAAATCGCGGGAGACT
GGGAATTTGTGGTCCGTTGGAGTATCATGTACCGGATCTCAATTGACATT
CACATATCCATCAGCAAACCCTGAATCGGTGTGTAGCTTCTCCCGTGATT
TGACCCGAGCTCGAACAGCCGCAGCACTTGCTCGCGGTGTTCATCCGTCA
CGGTTTTACAGGGTTATAAGGCGCTCACCCGTACACATTGTCGTCGGTAT
AGGACCATACGGGCCGAACCAAGGGGTAACTGCTCCAGGCGTCCCGCCGC
CAAAACCTCAGTACACTGCAACTGCAGAATATGTCTATTCAAAGGGGAAC
AGTGGTGGATTTAGTCTTTCGTTTTCGCCTACGAAACCGACAATGGACCA
GTTGGCACCGTACATCGAAGAGGCACTTGATGCATCTGGAGGACAGGCAG
GGGCTATTCTTGCAGGTTTATTAGAAAGAGCATGTTCGGTGGTGGCGGCA
GCCGAAAGCGCAGTGAAAGAGAAGAAGAATGGCAGAACCCGTTTCCTGAC
GGCTCTTAAGAGTGCGCGCAATGTTCAGCGGCGATCCTGA

Coding sequence (CDS) from alignment at NODE_3449_length_3431_cov_9.984132:1388..2827+

>Gcaud763.t1 ID=Gcaud763.t1|Name=Gcaud763.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1440bp|location=Sequence derived from alignment at NODE_3449_length_3431_cov_9.984132:1388..2827+ (Gracilaria caudata M_176_S67 male)
AGAGTTTCAGAAGTCTGGCTGGGTGCCCGTCAGTTTGCATCCAAAACAGA
AGAAGTAGCGGCATGCACTCGTGCTTTTGAAGTGATCCGCGCGAGGGTGA
AGCTTGATGCGGCGGCTAGATCCGTCTGCGCTTTGGACATTGGCGTTTCC
AATACGTTACCTCCTGGCACGGCATCGGTCGCTGCCTCGGCGACGCGAGA
TCCTGCAGCGAGTCAGCTTGTTCCCCCGTTTGCGCCTTTGCAACGAAGAG
CTCCAAGGAGGTTTTTGACCCTGTCACCACCACCCAACCTCAAAGATCCG
CTGAACGGTATGAGAATGGGACCGGCCGCGTCGTCGACGTACCGCGCAAC
AAGTTCTTGGGGATTCGACAGGAACGGATCCTCAAAACGTCCGCGATTGA
CCTATGCGACAACCAGCGATTCACTCGTCTTTATCCAAGAAAGCTCATTT
GCTGGCGGTGACTGGCGAATTGGTGCGCGAGATGGGGACGGGTGCAAAAC
GACATCTCGGTCTGTTCAAAACACAGAGACAGATAGTATCGATAGGTACA
GTGGTACGGCAGCTGCAGCCGTGGCATGGGCTTTGACAAGAGAGGTTGTG
GAAAGACGACTGAAGCGCGACTCTCCTATACGAGCGTTCTATAGAGCCAG
CGTTTTTGCCCAAATGCATCACATGCGAACGAGCGAAGACAGCGACTTGC
ATCTGGAATCAGCATCTCGCGTCCTGCTTCGCGTGAAGTGTGAGCCACTG
CCAGTAAGGAGAGCGGAGCTTTTGCTTAGAGGTTATGATGTTTGGCAAGT
CCGGCTGTCGTCACTACCGTCAATATTTGACAGCACCAATTCGGTCGTTA
CACCGTCTGGGAGACCTAAACCGCTTACTAACTCAAAATCGCGGGAGACT
GGGAATTTGTGGTCCGTTGGAGTATCATGTACCGGATCTCAATTGACATT
CACATATCCATCAGCAAACCCTGAATCGGTGTGTAGCTTCTCCCGTGATT
TGACCCGAGCTCGAACAGCCGCAGCACTTGCTCGCGGTGTTCATCCGTCA
CGGTTTTACAGGGTTATAAGGCGCTCACCCGTACACATTGTCGTCGGTAT
AGGACCATACGGGCCGAACCAAGGGGTAACTGCTCCAGGCGTCCCGCCGC
CAAAACCTCAGTACACTGCAACTGCAGAATATGTCTATTCAAAGGGGAAC
AGTGGTGGATTTAGTCTTTCGTTTTCGCCTACGAAACCGACAATGGACCA
GTTGGCACCGTACATCGAAGAGGCACTTGATGCATCTGGAGGACAGGCAG
GGGCTATTCTTGCAGGTTTATTAGAAAGAGCATGTTCGGTGGTGGCGGCA
GCCGAAAGCGCAGTGAAAGAGAAGAAGAATGGCAGAACCCGTTTCCTGAC
GGCTCTTAAGAGTGCGCGCAATGTTCAGCGGCGATCCTGA