Gcaud7626.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7626.t1
Unique NameGcaud7626.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_534_length_22701_cov_4.725210contigNODE_534_length_22701_cov_4.725210:12150..12744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7626Gcaud7626Gracilaria caudata M_176_S67 malegeneNODE_534_length_22701_cov_4.725210 12150..12744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7626.t1Gcaud7626.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_534_length_22701_cov_4.725210 12150..12744 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7626.t1.stop1Gcaud7626.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_534_length_22701_cov_4.725210 12150..12152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7626.t1.CDS1Gcaud7626.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_534_length_22701_cov_4.725210 12150..12378 -
Gcaud7626.t1.CDS2Gcaud7626.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_534_length_22701_cov_4.725210 12461..12744 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7626.t1.exon1Gcaud7626.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_534_length_22701_cov_4.725210 12150..12378 -
Gcaud7626.t1.exon2Gcaud7626.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_534_length_22701_cov_4.725210 12461..12744 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7626.t1.intron1Gcaud7626.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_534_length_22701_cov_4.725210 12379..12460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7626.t1.start1Gcaud7626.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_534_length_22701_cov_4.725210 12742..12744 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7626.t1 ID=Gcaud7626.t1|Name=Gcaud7626.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
MGQLFSSSSNLAENTAQKEARPRRYECHETIKGSTWTEEPGTSTRDRMIQ
KRRRSRAPKVFTIPLDNRPEEVVERVCETVVGEMVQIFWTEINCWVDGEV
VAYTNRMSETAMAGMHCIQYEDGIKEWKKIEKFRVVKQHGDWSKDPISSS
SESAELGNRRKATTRVVLED*
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spliced messenger RNA

>Gcaud7626.t1 ID=Gcaud7626.t1|Name=Gcaud7626.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_534_length_22701_cov_4.725210:12150..12744- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAGCTTTTCAGCTCATCTTCGAATCTGGCTGAGAATACAGCTCA
AAAAGAAGCACGTCCCAGACGGTATGAGTGTCATGAAACTATCAAGGGAT
CAACATGGACAGAAGAGCCTGGAACATCGACCAGGGATCGAATGATTCAG
AAACGCCGACGCTCGCGTGCTCCAAAGGTGTTTACTATACCTCTGGACAA
TCGACCAGAGGAGGTTGTGGAGCGCGTCTGTGAAACCGTGGTAGGAGAGA
TGGTACAGATTTTCTGGACAGAGATTAACTGCTGGGTGGATGGTGAAGTT
GTGGCATACACCAACAGGATGTCTGAGACGGCTATGGCTGGAATGCATTG
CATTCAGTATGAAGACGGTATAAAGGAGTGGAAGAAGATAGAGAAGTTTC
GTGTGGTGAAGCAACACGGGGACTGGTCAAAAGATCCAATATCGTCGTCA
TCTGAAAGCGCAGAGTTGGGAAACAGGAGAAAGGCTACGACGAGAGTTGT
ACTTGAAGATTAG
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protein sequence of Gcaud7626.t1

>Gcaud7626.t1 ID=Gcaud7626.t1|Name=Gcaud7626.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MGQLFSSSSNLAENTAQKEARPRRYECHETIKGSTWTEEPGTSTRDRMIQ
KRRRSRAPKVFTIPLDNRPEEVVERVCETVVGEMVQIFWTEINCWVDGEV
VAYTNRMSETAMAGMHCIQYEDGIKEWKKIEKFRVVKQHGDWSKDPISSS
SESAELGNRRKATTRVVLED*
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mRNA from alignment at NODE_534_length_22701_cov_4.725210:12150..12744-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7626.t1 ID=Gcaud7626.t1|Name=Gcaud7626.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=595bp|location=Sequence derived from alignment at NODE_534_length_22701_cov_4.725210:12150..12744- (Gracilaria caudata M_176_S67 male)
ATGGGACAGCTTTTCAGCTCATCTTCGAATCTGGCTGAGAATACAGCTCA
AAAAGAAGCACGTCCCAGACGGTATGAGTGTCATGAAACTATCAAGGGAT
CAACATGGACAGAAGAGCCTGGAACATCGACCAGGGATCGAATGATTCAG
AAACGCCGACGCTCGCGTGCTCCAAAGGTGTTTACTATACCTCTGGACAA
TCGACCAGAGGAGGTTGTGGAGCGCGTCTGTGAAACCGTGGTAGGAGAGA
TGGTACAGATTTTCTGGACAGAGATTAACTGCTGGTACGTTGCCATACAA
CCTCTTTCGAGCATTTGATGAGAAGAATGTTGTGTTTCTCTGTCTTATGA
AACTAATATATTGCAGGGTGGATGGTGAAGTTGTGGCATACACCAACAGG
ATGTCTGAGACGGCTATGGCTGGAATGCATTGCATTCAGTATGAAGACGG
TATAAAGGAGTGGAAGAAGATAGAGAAGTTTCGTGTGGTGAAGCAACACG
GGGACTGGTCAAAAGATCCAATATCGTCGTCATCTGAAAGCGCAGAGTTG
GGAAACAGGAGAAAGGCTACGACGAGAGTTGTACTTGAAGATTAG
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Coding sequence (CDS) from alignment at NODE_534_length_22701_cov_4.725210:12150..12744-

>Gcaud7626.t1 ID=Gcaud7626.t1|Name=Gcaud7626.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=513bp|location=Sequence derived from alignment at NODE_534_length_22701_cov_4.725210:12150..12744- (Gracilaria caudata M_176_S67 male)
ATGGGACAGCTTTTCAGCTCATCTTCGAATCTGGCTGAGAATACAGCTCA
AAAAGAAGCACGTCCCAGACGGTATGAGTGTCATGAAACTATCAAGGGAT
CAACATGGACAGAAGAGCCTGGAACATCGACCAGGGATCGAATGATTCAG
AAACGCCGACGCTCGCGTGCTCCAAAGGTGTTTACTATACCTCTGGACAA
TCGACCAGAGGAGGTTGTGGAGCGCGTCTGTGAAACCGTGGTAGGAGAGA
TGGTACAGATTTTCTGGACAGAGATTAACTGCTGGGTGGATGGTGAAGTT
GTGGCATACACCAACAGGATGTCTGAGACGGCTATGGCTGGAATGCATTG
CATTCAGTATGAAGACGGTATAAAGGAGTGGAAGAAGATAGAGAAGTTTC
GTGTGGTGAAGCAACACGGGGACTGGTCAAAAGATCCAATATCGTCGTCA
TCTGAAAGCGCAGAGTTGGGAAACAGGAGAAAGGCTACGACGAGAGTTGT
ACTTGAAGATTAG
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