Gcaud7617.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7617.t1
Unique NameGcaud7617.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2884_length_4470_cov_5.310345contigNODE_2884_length_4470_cov_5.310345:1368..2180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7617Gcaud7617Gracilaria caudata M_176_S67 malegeneNODE_2884_length_4470_cov_5.310345 1368..2180 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7617.t1.stop1Gcaud7617.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2884_length_4470_cov_5.310345 1368..1370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7617.t1.CDS1Gcaud7617.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2884_length_4470_cov_5.310345 1368..2180 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7617.t1.exon1Gcaud7617.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2884_length_4470_cov_5.310345 1368..2180 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7617.t1.start1Gcaud7617.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2884_length_4470_cov_5.310345 2178..2180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7617.t1Gcaud7617.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2884_length_4470_cov_5.310345 1368..2180 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7617.t1 ID=Gcaud7617.t1|Name=Gcaud7617.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=271bp
MDDEITPNPVHLKESDKDSDDILDVPIAQLRYHSRNHAPTFLDPQPNSRP
RPKPKGAGSVRARRKVATSRENFLSGTTDWVFEDFNTDALCFEKEFIESV
VSERARMYCLAVVENLETQQNARVLPEGRLRYVALFLEPILRKTIEWLNE
LILLRKKDRKLLGLYDGFRFLAVLLMSHCTGFSLDKTISIMNENGLNPPR
LELMHFILSNIMAFSPTLRFESEMTWVPQRDLTRNLTLFERTAFEETCKL
FLAPLHLFCTLDDDLYGTRA*
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spliced messenger RNA

>Gcaud7617.t1 ID=Gcaud7617.t1|Name=Gcaud7617.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=813bp|location=Sequence derived from alignment at NODE_2884_length_4470_cov_5.310345:1368..2180- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGACGAGATTACACCAAACCCAGTTCATCTCAAGGAAAGTGACAA
AGATTCAGATGATATTCTTGACGTACCTATTGCGCAACTGCGATATCATT
CTCGTAACCATGCTCCTACTTTCCTAGATCCACAACCAAACTCTCGTCCA
AGACCAAAACCAAAAGGTGCTGGCAGCGTACGGGCTCGTCGCAAAGTAGC
TACATCGAGAGAAAACTTTTTGAGCGGAACAACTGACTGGGTTTTTGAGG
ACTTTAACACGGACGCCCTTTGTTTCGAAAAAGAGTTTATTGAATCTGTT
GTGAGTGAAAGGGCTCGAATGTACTGTCTGGCAGTCGTTGAAAACCTTGA
GACTCAGCAGAATGCGCGAGTGCTTCCGGAAGGTCGACTACGTTATGTGG
CTCTTTTTCTAGAGCCAATTTTGAGGAAGACGATTGAGTGGCTTAACGAA
CTTATACTTCTCCGAAAGAAAGATCGAAAGCTACTAGGACTCTATGATGG
CTTCAGATTTCTTGCTGTTCTTCTTATGTCACATTGCACTGGGTTTAGCT
TGGACAAAACGATCTCAATTATGAACGAAAATGGCTTAAATCCGCCAAGG
CTAGAGCTGATGCACTTCATTTTGTCGAACATTATGGCGTTCTCCCCAAC
ATTGCGCTTTGAATCAGAGATGACGTGGGTACCGCAGCGCGATTTGACAC
GCAATTTAACGCTCTTTGAAAGAACGGCATTTGAAGAGACTTGCAAACTC
TTTCTGGCTCCCCTTCATTTGTTCTGTACCTTGGACGACGATTTATACGG
GACAAGGGCCTAG
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protein sequence of Gcaud7617.t1

>Gcaud7617.t1 ID=Gcaud7617.t1|Name=Gcaud7617.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=271bp
MDDEITPNPVHLKESDKDSDDILDVPIAQLRYHSRNHAPTFLDPQPNSRP
RPKPKGAGSVRARRKVATSRENFLSGTTDWVFEDFNTDALCFEKEFIESV
VSERARMYCLAVVENLETQQNARVLPEGRLRYVALFLEPILRKTIEWLNE
LILLRKKDRKLLGLYDGFRFLAVLLMSHCTGFSLDKTISIMNENGLNPPR
LELMHFILSNIMAFSPTLRFESEMTWVPQRDLTRNLTLFERTAFEETCKL
FLAPLHLFCTLDDDLYGTRA*
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mRNA from alignment at NODE_2884_length_4470_cov_5.310345:1368..2180-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7617.t1 ID=Gcaud7617.t1|Name=Gcaud7617.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=813bp|location=Sequence derived from alignment at NODE_2884_length_4470_cov_5.310345:1368..2180- (Gracilaria caudata M_176_S67 male)
ATGGATGACGAGATTACACCAAACCCAGTTCATCTCAAGGAAAGTGACAA
AGATTCAGATGATATTCTTGACGTACCTATTGCGCAACTGCGATATCATT
CTCGTAACCATGCTCCTACTTTCCTAGATCCACAACCAAACTCTCGTCCA
AGACCAAAACCAAAAGGTGCTGGCAGCGTACGGGCTCGTCGCAAAGTAGC
TACATCGAGAGAAAACTTTTTGAGCGGAACAACTGACTGGGTTTTTGAGG
ACTTTAACACGGACGCCCTTTGTTTCGAAAAAGAGTTTATTGAATCTGTT
GTGAGTGAAAGGGCTCGAATGTACTGTCTGGCAGTCGTTGAAAACCTTGA
GACTCAGCAGAATGCGCGAGTGCTTCCGGAAGGTCGACTACGTTATGTGG
CTCTTTTTCTAGAGCCAATTTTGAGGAAGACGATTGAGTGGCTTAACGAA
CTTATACTTCTCCGAAAGAAAGATCGAAAGCTACTAGGACTCTATGATGG
CTTCAGATTTCTTGCTGTTCTTCTTATGTCACATTGCACTGGGTTTAGCT
TGGACAAAACGATCTCAATTATGAACGAAAATGGCTTAAATCCGCCAAGG
CTAGAGCTGATGCACTTCATTTTGTCGAACATTATGGCGTTCTCCCCAAC
ATTGCGCTTTGAATCAGAGATGACGTGGGTACCGCAGCGCGATTTGACAC
GCAATTTAACGCTCTTTGAAAGAACGGCATTTGAAGAGACTTGCAAACTC
TTTCTGGCTCCCCTTCATTTGTTCTGTACCTTGGACGACGATTTATACGG
GACAAGGGCCTAG
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Coding sequence (CDS) from alignment at NODE_2884_length_4470_cov_5.310345:1368..2180-

>Gcaud7617.t1 ID=Gcaud7617.t1|Name=Gcaud7617.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=813bp|location=Sequence derived from alignment at NODE_2884_length_4470_cov_5.310345:1368..2180- (Gracilaria caudata M_176_S67 male)
ATGGATGACGAGATTACACCAAACCCAGTTCATCTCAAGGAAAGTGACAA
AGATTCAGATGATATTCTTGACGTACCTATTGCGCAACTGCGATATCATT
CTCGTAACCATGCTCCTACTTTCCTAGATCCACAACCAAACTCTCGTCCA
AGACCAAAACCAAAAGGTGCTGGCAGCGTACGGGCTCGTCGCAAAGTAGC
TACATCGAGAGAAAACTTTTTGAGCGGAACAACTGACTGGGTTTTTGAGG
ACTTTAACACGGACGCCCTTTGTTTCGAAAAAGAGTTTATTGAATCTGTT
GTGAGTGAAAGGGCTCGAATGTACTGTCTGGCAGTCGTTGAAAACCTTGA
GACTCAGCAGAATGCGCGAGTGCTTCCGGAAGGTCGACTACGTTATGTGG
CTCTTTTTCTAGAGCCAATTTTGAGGAAGACGATTGAGTGGCTTAACGAA
CTTATACTTCTCCGAAAGAAAGATCGAAAGCTACTAGGACTCTATGATGG
CTTCAGATTTCTTGCTGTTCTTCTTATGTCACATTGCACTGGGTTTAGCT
TGGACAAAACGATCTCAATTATGAACGAAAATGGCTTAAATCCGCCAAGG
CTAGAGCTGATGCACTTCATTTTGTCGAACATTATGGCGTTCTCCCCAAC
ATTGCGCTTTGAATCAGAGATGACGTGGGTACCGCAGCGCGATTTGACAC
GCAATTTAACGCTCTTTGAAAGAACGGCATTTGAAGAGACTTGCAAACTC
TTTCTGGCTCCCCTTCATTTGTTCTGTACCTTGGACGACGATTTATACGG
GACAAGGGCCTAG
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