Gcaud7616.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7616.t1
Unique Name	Gcaud7616.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2884_length_4470_cov_5.310345	contig	NODE_2884_length_4470_cov_5.310345:10..1175 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7616	Gcaud7616	Gracilaria caudata M_176_S67 male	gene	NODE_2884_length_4470_cov_5.310345 10..1175 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7616.t1.CDS1	Gcaud7616.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2884_length_4470_cov_5.310345 10..1175 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7616.t1.exon1	Gcaud7616.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2884_length_4470_cov_5.310345 10..1175 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7616.t1.start1	Gcaud7616.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2884_length_4470_cov_5.310345 1173..1175 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7616.t1	Gcaud7616.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2884_length_4470_cov_5.310345 10..1175 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2884_length_4470_cov_5.310345:10..1175-
coding sequence from alignment at NODE_2884_length_4470_cov_5.310345:10..1175-

mRNA sequence

>Gcaud7616.t1 ID=Gcaud7616.t1|Name=Gcaud7616.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=389bp
MLLTADRGYGKKEVLEFMRGKGISAICVMPEHLIKCNPFVGASYLTPTRA
DEAECDYNRAELDTVPIRFDDTVANGKYATERTPFVIDDSSATGRAAFYA
RSKANRAQGSIRATAVREQGSDKFANVVRFLRDIPESMDIGMRQWVAVPK
AKRFDWHLYIDPECKNPLMNVLEEGLKLSCTVLTKAQRCADWFILRQFRV
TATLSGAALFRSKDVRDVLRLSPQRGDTTQAQASVMQELTTAWFSTKRST
ETMIRGTTNENVVRAALRQLPFITGLFEVGMLGVKGEDHFACSPDGVALI
DLTIFRDQLEANGAVDVIGMHFGDMYLGFAAVEIKTRVAKSTIGSAVTHA
TESLIVMRIGAKEHTEYVPAEHLCQILHQMFVLNVNLCX

spliced messenger RNA

>Gcaud7616.t1 ID=Gcaud7616.t1|Name=Gcaud7616.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1166bp|location=Sequence derived from alignment at NODE_2884_length_4470_cov_5.310345:10..1175- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCTTACTGCAGACAGAGGTTACGGGAAGAAAGAAGTTCTCGAGTT
CATGAGAGGGAAAGGAATCAGCGCCATTTGTGTGATGCCTGAGCATTTGA
TTAAGTGTAATCCATTTGTCGGGGCCTCGTATTTGACTCCCACCAGAGCT
GACGAAGCGGAATGCGACTATAATCGTGCTGAATTGGACACAGTACCAAT
TAGATTTGATGACACTGTAGCAAACGGGAAGTACGCTACAGAAAGGACCC
CATTCGTTATCGATGACTCATCCGCAACCGGTCGTGCTGCCTTCTACGCA
CGGTCAAAGGCGAACAGAGCCCAAGGTTCAATTCGGGCGACGGCTGTCAG
GGAACAGGGATCTGATAAGTTTGCCAACGTTGTGCGGTTTCTGCGGGATA
TCCCGGAAAGCATGGATATAGGAATGCGCCAATGGGTCGCAGTCCCCAAA
GCGAAGAGGTTTGACTGGCACCTGTACATAGACCCGGAGTGTAAAAATCC
ACTCATGAATGTGTTGGAAGAAGGGCTGAAGCTTTCGTGCACTGTCTTGA
CAAAGGCACAAAGGTGTGCTGATTGGTTTATACTGCGTCAGTTCAGAGTC
ACAGCCACTCTCTCGGGAGCTGCCTTGTTCAGGAGCAAGGATGTTAGGGA
TGTACTAAGACTGTCACCGCAGCGAGGCGACACCACTCAAGCTCAAGCAA
GTGTTATGCAGGAGTTGACGACAGCTTGGTTCAGTACAAAGCGAAGTACT
GAGACGATGATACGAGGAACCACGAACGAAAACGTTGTACGAGCTGCACT
GCGCCAGTTACCGTTTATCACAGGATTGTTTGAGGTTGGCATGCTTGGGG
TAAAAGGAGAGGATCACTTCGCATGCTCACCTGATGGAGTTGCTTTGATT
GATCTCACGATATTTCGTGATCAGCTGGAAGCAAATGGTGCAGTCGATGT
CATAGGAATGCACTTCGGTGACATGTATCTTGGCTTCGCAGCTGTTGAAA
TCAAAACAAGGGTTGCAAAATCAACCATCGGCTCTGCAGTTACGCACGCC
ACCGAGTCGCTCATTGTAATGAGGATTGGGGCAAAGGAACATACAGAGTA
CGTGCCGGCTGAACATCTGTGCCAGATTCTACACCAGATGTTCGTTTTGA
ACGTTAATCTTTGCTT

protein sequence of Gcaud7616.t1

>Gcaud7616.t1 ID=Gcaud7616.t1|Name=Gcaud7616.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=389bp
MLLTADRGYGKKEVLEFMRGKGISAICVMPEHLIKCNPFVGASYLTPTRA
DEAECDYNRAELDTVPIRFDDTVANGKYATERTPFVIDDSSATGRAAFYA
RSKANRAQGSIRATAVREQGSDKFANVVRFLRDIPESMDIGMRQWVAVPK
AKRFDWHLYIDPECKNPLMNVLEEGLKLSCTVLTKAQRCADWFILRQFRV
TATLSGAALFRSKDVRDVLRLSPQRGDTTQAQASVMQELTTAWFSTKRST
ETMIRGTTNENVVRAALRQLPFITGLFEVGMLGVKGEDHFACSPDGVALI
DLTIFRDQLEANGAVDVIGMHFGDMYLGFAAVEIKTRVAKSTIGSAVTHA
TESLIVMRIGAKEHTEYVPAEHLCQILHQMFVLNVNLCX

mRNA from alignment at NODE_2884_length_4470_cov_5.310345:10..1175-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7616.t1 ID=Gcaud7616.t1|Name=Gcaud7616.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1166bp|location=Sequence derived from alignment at NODE_2884_length_4470_cov_5.310345:10..1175- (Gracilaria caudata M_176_S67 male)
ATGCTCCTTACTGCAGACAGAGGTTACGGGAAGAAAGAAGTTCTCGAGTT
CATGAGAGGGAAAGGAATCAGCGCCATTTGTGTGATGCCTGAGCATTTGA
TTAAGTGTAATCCATTTGTCGGGGCCTCGTATTTGACTCCCACCAGAGCT
GACGAAGCGGAATGCGACTATAATCGTGCTGAATTGGACACAGTACCAAT
TAGATTTGATGACACTGTAGCAAACGGGAAGTACGCTACAGAAAGGACCC
CATTCGTTATCGATGACTCATCCGCAACCGGTCGTGCTGCCTTCTACGCA
CGGTCAAAGGCGAACAGAGCCCAAGGTTCAATTCGGGCGACGGCTGTCAG
GGAACAGGGATCTGATAAGTTTGCCAACGTTGTGCGGTTTCTGCGGGATA
TCCCGGAAAGCATGGATATAGGAATGCGCCAATGGGTCGCAGTCCCCAAA
GCGAAGAGGTTTGACTGGCACCTGTACATAGACCCGGAGTGTAAAAATCC
ACTCATGAATGTGTTGGAAGAAGGGCTGAAGCTTTCGTGCACTGTCTTGA
CAAAGGCACAAAGGTGTGCTGATTGGTTTATACTGCGTCAGTTCAGAGTC
ACAGCCACTCTCTCGGGAGCTGCCTTGTTCAGGAGCAAGGATGTTAGGGA
TGTACTAAGACTGTCACCGCAGCGAGGCGACACCACTCAAGCTCAAGCAA
GTGTTATGCAGGAGTTGACGACAGCTTGGTTCAGTACAAAGCGAAGTACT
GAGACGATGATACGAGGAACCACGAACGAAAACGTTGTACGAGCTGCACT
GCGCCAGTTACCGTTTATCACAGGATTGTTTGAGGTTGGCATGCTTGGGG
TAAAAGGAGAGGATCACTTCGCATGCTCACCTGATGGAGTTGCTTTGATT
GATCTCACGATATTTCGTGATCAGCTGGAAGCAAATGGTGCAGTCGATGT
CATAGGAATGCACTTCGGTGACATGTATCTTGGCTTCGCAGCTGTTGAAA
TCAAAACAAGGGTTGCAAAATCAACCATCGGCTCTGCAGTTACGCACGCC
ACCGAGTCGCTCATTGTAATGAGGATTGGGGCAAAGGAACATACAGAGTA
CGTGCCGGCTGAACATCTGTGCCAGATTCTACACCAGATGTTCGTTTTGA
ACGTTAATCTTTGCTT

Coding sequence (CDS) from alignment at NODE_2884_length_4470_cov_5.310345:10..1175-

>Gcaud7616.t1 ID=Gcaud7616.t1|Name=Gcaud7616.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1166bp|location=Sequence derived from alignment at NODE_2884_length_4470_cov_5.310345:10..1175- (Gracilaria caudata M_176_S67 male)
ATGCTCCTTACTGCAGACAGAGGTTACGGGAAGAAAGAAGTTCTCGAGTT
CATGAGAGGGAAAGGAATCAGCGCCATTTGTGTGATGCCTGAGCATTTGA
TTAAGTGTAATCCATTTGTCGGGGCCTCGTATTTGACTCCCACCAGAGCT
GACGAAGCGGAATGCGACTATAATCGTGCTGAATTGGACACAGTACCAAT
TAGATTTGATGACACTGTAGCAAACGGGAAGTACGCTACAGAAAGGACCC
CATTCGTTATCGATGACTCATCCGCAACCGGTCGTGCTGCCTTCTACGCA
CGGTCAAAGGCGAACAGAGCCCAAGGTTCAATTCGGGCGACGGCTGTCAG
GGAACAGGGATCTGATAAGTTTGCCAACGTTGTGCGGTTTCTGCGGGATA
TCCCGGAAAGCATGGATATAGGAATGCGCCAATGGGTCGCAGTCCCCAAA
GCGAAGAGGTTTGACTGGCACCTGTACATAGACCCGGAGTGTAAAAATCC
ACTCATGAATGTGTTGGAAGAAGGGCTGAAGCTTTCGTGCACTGTCTTGA
CAAAGGCACAAAGGTGTGCTGATTGGTTTATACTGCGTCAGTTCAGAGTC
ACAGCCACTCTCTCGGGAGCTGCCTTGTTCAGGAGCAAGGATGTTAGGGA
TGTACTAAGACTGTCACCGCAGCGAGGCGACACCACTCAAGCTCAAGCAA
GTGTTATGCAGGAGTTGACGACAGCTTGGTTCAGTACAAAGCGAAGTACT
GAGACGATGATACGAGGAACCACGAACGAAAACGTTGTACGAGCTGCACT
GCGCCAGTTACCGTTTATCACAGGATTGTTTGAGGTTGGCATGCTTGGGG
TAAAAGGAGAGGATCACTTCGCATGCTCACCTGATGGAGTTGCTTTGATT
GATCTCACGATATTTCGTGATCAGCTGGAAGCAAATGGTGCAGTCGATGT
CATAGGAATGCACTTCGGTGACATGTATCTTGGCTTCGCAGCTGTTGAAA
TCAAAACAAGGGTTGCAAAATCAACCATCGGCTCTGCAGTTACGCACGCC
ACCGAGTCGCTCATTGTAATGAGGATTGGGGCAAAGGAACATACAGAGTA
CGTGCCGGCTGAACATCTGTGCCAGATTCTACACCAGATGTTCGTTTTGA
ACGTTAATCTTTGCTT