Gcaud7609.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7609.t1
Unique NameGcaud7609.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3575_length_3245_cov_2.821814contigNODE_3575_length_3245_cov_2.821814:50..1563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703106.1
Preferred nameUGDH1
PFAMsUDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00291
KEGG koko:K00012
KEGG ReactionR00286
KEGG Pathwayko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100
KEGG ModuleM00014,M00129,M00361,M00362
Evalue7.21e-233
EggNOG OGsCOG1004@1|root,KOG2666@2759|Eukaryota
EC1.1.1.22
DescriptionUDP-glucose 6-dehydrogenase activity
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7609Gcaud7609Gracilaria caudata M_176_S67 malegeneNODE_3575_length_3245_cov_2.821814 50..1563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7609.t1Gcaud7609.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3575_length_3245_cov_2.821814 50..1563 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7609.t1.stop1Gcaud7609.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3575_length_3245_cov_2.821814 50..52 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7609.t1.CDS1Gcaud7609.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3575_length_3245_cov_2.821814 50..1405 -
Gcaud7609.t1.CDS2Gcaud7609.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_3575_length_3245_cov_2.821814 1495..1563 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7609.t1.exon1Gcaud7609.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3575_length_3245_cov_2.821814 50..1405 -
Gcaud7609.t1.exon2Gcaud7609.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_3575_length_3245_cov_2.821814 1495..1563 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7609.t1.intron1Gcaud7609.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_3575_length_3245_cov_2.821814 1406..1494 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7609.t1.start1Gcaud7609.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3575_length_3245_cov_2.821814 1561..1563 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7609.t1 ID=Gcaud7609.t1|Name=Gcaud7609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=475bp
MVSIPSQDGLKICCVGAGYVGGPTMSMIALKCPEVQVKIVDISSSRIAAW
NSDNLPIYEPGLHKVVSACRGKNLFFSTDIDEAIQEADIIFVAVNTPTKK
VGIGAGRASDLTYWELAARRIAQVAETPKIVVEKSTVPIKTAEAISAVLH
GAGKTRFDVLSNPEFLAEGTAITDLDNPDRVLIGGQLDESGKKAMQMLAD
VYAHWVPRERILLTNVWSSELSKLVANSFLAQRVSSINAISAVCEASGAD
VDEVARAVGMDTRIGAKFLKASVGFGGSCFQKDILNLVYLCESFGLPEVA
HYFHQVVHMNDYQKERFVRRIIHGLYNTVTGKKIALLGFAFKKDTGDTRE
SAAIDVCRRLIEEKAQVAIYDPKVDEEQIWMDLTYACGMDKTEVQKYVTL
CDDALSACHDAHAMAVATEWDEFKEVDYKQVYESMVKPSFVFDGRNILDH
AALRDIGFVVYAIGKPLDTKLSTA*
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spliced messenger RNA

>Gcaud7609.t1 ID=Gcaud7609.t1|Name=Gcaud7609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_3575_length_3245_cov_2.821814:50..1563- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCATCCCGTCTCAGGATGGGCTCAAGATCTGCTGCGTCGGCGC
CGGCTACGTCGGTGGACCGACTATGTCCATGATCGCTCTCAAGTGTCCAG
AGGTGCAGGTCAAAATCGTGGATATTTCTAGCTCGCGCATCGCCGCGTGG
AACAGCGACAACCTGCCCATCTATGAGCCCGGCCTACACAAGGTTGTGTC
CGCCTGCCGTGGAAAAAACCTGTTTTTCAGCACCGACATCGATGAAGCCA
TCCAGGAGGCCGACATCATCTTCGTGGCTGTCAACACTCCCACCAAAAAG
GTGGGCATCGGCGCCGGCCGCGCCTCCGACCTCACGTACTGGGAGCTGGC
CGCGCGCCGCATCGCACAGGTGGCCGAAACTCCCAAGATCGTGGTAGAGA
AGAGTACCGTGCCCATCAAGACCGCCGAAGCCATCTCCGCCGTGCTGCAC
GGCGCCGGCAAGACACGCTTCGATGTGCTGAGCAACCCGGAGTTCCTGGC
CGAGGGTACCGCCATCACCGACCTGGACAACCCGGACCGCGTGCTGATCG
GCGGACAGCTGGACGAGTCGGGGAAGAAGGCCATGCAGATGCTGGCCGAT
GTGTACGCTCACTGGGTGCCGCGCGAGCGCATCCTGCTCACCAACGTGTG
GTCGTCCGAGCTGTCTAAGCTGGTGGCCAACTCGTTCCTGGCGCAGAGGG
TGTCTTCCATCAACGCCATCTCGGCCGTGTGCGAGGCGTCTGGCGCGGAC
GTGGACGAAGTGGCGCGCGCTGTCGGAATGGACACGCGCATCGGCGCCAA
GTTCCTCAAGGCGTCGGTAGGATTTGGCGGCTCGTGCTTCCAGAAGGACA
TTTTGAACCTGGTGTACTTGTGCGAGTCGTTCGGACTGCCCGAGGTGGCA
CACTACTTCCACCAGGTGGTGCACATGAACGACTACCAGAAGGAGCGCTT
CGTGCGACGCATCATCCACGGACTATACAACACTGTGACGGGCAAGAAGA
TCGCGCTGCTGGGCTTCGCGTTCAAGAAGGACACGGGCGATACGCGCGAG
TCGGCGGCCATCGACGTGTGTAGGCGTCTGATCGAAGAGAAGGCGCAGGT
GGCCATCTACGACCCCAAGGTGGACGAGGAGCAGATCTGGATGGACCTGA
CGTACGCATGTGGCATGGACAAGACAGAGGTACAGAAGTACGTGACGCTG
TGCGACGACGCGCTGAGCGCGTGCCACGACGCGCACGCCATGGCGGTGGC
GACGGAGTGGGACGAGTTCAAAGAGGTGGACTACAAGCAGGTTTACGAAA
GCATGGTGAAGCCGTCGTTTGTGTTCGACGGGCGCAATATTCTGGACCAC
GCCGCACTGCGCGACATCGGCTTTGTGGTGTACGCCATTGGCAAGCCGCT
GGACACGAAGCTGAGCACGGCGTGA
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protein sequence of Gcaud7609.t1

>Gcaud7609.t1 ID=Gcaud7609.t1|Name=Gcaud7609.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MVSIPSQDGLKICCVGAGYVGGPTMSMIALKCPEVQVKIVDISSSRIAAW
NSDNLPIYEPGLHKVVSACRGKNLFFSTDIDEAIQEADIIFVAVNTPTKK
VGIGAGRASDLTYWELAARRIAQVAETPKIVVEKSTVPIKTAEAISAVLH
GAGKTRFDVLSNPEFLAEGTAITDLDNPDRVLIGGQLDESGKKAMQMLAD
VYAHWVPRERILLTNVWSSELSKLVANSFLAQRVSSINAISAVCEASGAD
VDEVARAVGMDTRIGAKFLKASVGFGGSCFQKDILNLVYLCESFGLPEVA
HYFHQVVHMNDYQKERFVRRIIHGLYNTVTGKKIALLGFAFKKDTGDTRE
SAAIDVCRRLIEEKAQVAIYDPKVDEEQIWMDLTYACGMDKTEVQKYVTL
CDDALSACHDAHAMAVATEWDEFKEVDYKQVYESMVKPSFVFDGRNILDH
AALRDIGFVVYAIGKPLDTKLSTA*
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mRNA from alignment at NODE_3575_length_3245_cov_2.821814:50..1563-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7609.t1 ID=Gcaud7609.t1|Name=Gcaud7609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1514bp|location=Sequence derived from alignment at NODE_3575_length_3245_cov_2.821814:50..1563- (Gracilaria caudata M_176_S67 male)
ATGGTTTCCATCCCGTCTCAGGATGGGCTCAAGATCTGCTGCGTCGGCGC
CGGCTACGTCGGTGGACCGGTAAGTTGCGTCGCTCGCATCGGCTCGCCAC
TATCACACCCGCCATTGTTGCTGACACTGACACACACACACCCTCCCGCC
CTAAACAGACTATGTCCATGATCGCTCTCAAGTGTCCAGAGGTGCAGGTC
AAAATCGTGGATATTTCTAGCTCGCGCATCGCCGCGTGGAACAGCGACAA
CCTGCCCATCTATGAGCCCGGCCTACACAAGGTTGTGTCCGCCTGCCGTG
GAAAAAACCTGTTTTTCAGCACCGACATCGATGAAGCCATCCAGGAGGCC
GACATCATCTTCGTGGCTGTCAACACTCCCACCAAAAAGGTGGGCATCGG
CGCCGGCCGCGCCTCCGACCTCACGTACTGGGAGCTGGCCGCGCGCCGCA
TCGCACAGGTGGCCGAAACTCCCAAGATCGTGGTAGAGAAGAGTACCGTG
CCCATCAAGACCGCCGAAGCCATCTCCGCCGTGCTGCACGGCGCCGGCAA
GACACGCTTCGATGTGCTGAGCAACCCGGAGTTCCTGGCCGAGGGTACCG
CCATCACCGACCTGGACAACCCGGACCGCGTGCTGATCGGCGGACAGCTG
GACGAGTCGGGGAAGAAGGCCATGCAGATGCTGGCCGATGTGTACGCTCA
CTGGGTGCCGCGCGAGCGCATCCTGCTCACCAACGTGTGGTCGTCCGAGC
TGTCTAAGCTGGTGGCCAACTCGTTCCTGGCGCAGAGGGTGTCTTCCATC
AACGCCATCTCGGCCGTGTGCGAGGCGTCTGGCGCGGACGTGGACGAAGT
GGCGCGCGCTGTCGGAATGGACACGCGCATCGGCGCCAAGTTCCTCAAGG
CGTCGGTAGGATTTGGCGGCTCGTGCTTCCAGAAGGACATTTTGAACCTG
GTGTACTTGTGCGAGTCGTTCGGACTGCCCGAGGTGGCACACTACTTCCA
CCAGGTGGTGCACATGAACGACTACCAGAAGGAGCGCTTCGTGCGACGCA
TCATCCACGGACTATACAACACTGTGACGGGCAAGAAGATCGCGCTGCTG
GGCTTCGCGTTCAAGAAGGACACGGGCGATACGCGCGAGTCGGCGGCCAT
CGACGTGTGTAGGCGTCTGATCGAAGAGAAGGCGCAGGTGGCCATCTACG
ACCCCAAGGTGGACGAGGAGCAGATCTGGATGGACCTGACGTACGCATGT
GGCATGGACAAGACAGAGGTACAGAAGTACGTGACGCTGTGCGACGACGC
GCTGAGCGCGTGCCACGACGCGCACGCCATGGCGGTGGCGACGGAGTGGG
ACGAGTTCAAAGAGGTGGACTACAAGCAGGTTTACGAAAGCATGGTGAAG
CCGTCGTTTGTGTTCGACGGGCGCAATATTCTGGACCACGCCGCACTGCG
CGACATCGGCTTTGTGGTGTACGCCATTGGCAAGCCGCTGGACACGAAGC
TGAGCACGGCGTGA
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Coding sequence (CDS) from alignment at NODE_3575_length_3245_cov_2.821814:50..1563-

>Gcaud7609.t1 ID=Gcaud7609.t1|Name=Gcaud7609.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1425bp|location=Sequence derived from alignment at NODE_3575_length_3245_cov_2.821814:50..1563- (Gracilaria caudata M_176_S67 male)
ATGGTTTCCATCCCGTCTCAGGATGGGCTCAAGATCTGCTGCGTCGGCGC
CGGCTACGTCGGTGGACCGACTATGTCCATGATCGCTCTCAAGTGTCCAG
AGGTGCAGGTCAAAATCGTGGATATTTCTAGCTCGCGCATCGCCGCGTGG
AACAGCGACAACCTGCCCATCTATGAGCCCGGCCTACACAAGGTTGTGTC
CGCCTGCCGTGGAAAAAACCTGTTTTTCAGCACCGACATCGATGAAGCCA
TCCAGGAGGCCGACATCATCTTCGTGGCTGTCAACACTCCCACCAAAAAG
GTGGGCATCGGCGCCGGCCGCGCCTCCGACCTCACGTACTGGGAGCTGGC
CGCGCGCCGCATCGCACAGGTGGCCGAAACTCCCAAGATCGTGGTAGAGA
AGAGTACCGTGCCCATCAAGACCGCCGAAGCCATCTCCGCCGTGCTGCAC
GGCGCCGGCAAGACACGCTTCGATGTGCTGAGCAACCCGGAGTTCCTGGC
CGAGGGTACCGCCATCACCGACCTGGACAACCCGGACCGCGTGCTGATCG
GCGGACAGCTGGACGAGTCGGGGAAGAAGGCCATGCAGATGCTGGCCGAT
GTGTACGCTCACTGGGTGCCGCGCGAGCGCATCCTGCTCACCAACGTGTG
GTCGTCCGAGCTGTCTAAGCTGGTGGCCAACTCGTTCCTGGCGCAGAGGG
TGTCTTCCATCAACGCCATCTCGGCCGTGTGCGAGGCGTCTGGCGCGGAC
GTGGACGAAGTGGCGCGCGCTGTCGGAATGGACACGCGCATCGGCGCCAA
GTTCCTCAAGGCGTCGGTAGGATTTGGCGGCTCGTGCTTCCAGAAGGACA
TTTTGAACCTGGTGTACTTGTGCGAGTCGTTCGGACTGCCCGAGGTGGCA
CACTACTTCCACCAGGTGGTGCACATGAACGACTACCAGAAGGAGCGCTT
CGTGCGACGCATCATCCACGGACTATACAACACTGTGACGGGCAAGAAGA
TCGCGCTGCTGGGCTTCGCGTTCAAGAAGGACACGGGCGATACGCGCGAG
TCGGCGGCCATCGACGTGTGTAGGCGTCTGATCGAAGAGAAGGCGCAGGT
GGCCATCTACGACCCCAAGGTGGACGAGGAGCAGATCTGGATGGACCTGA
CGTACGCATGTGGCATGGACAAGACAGAGGTACAGAAGTACGTGACGCTG
TGCGACGACGCGCTGAGCGCGTGCCACGACGCGCACGCCATGGCGGTGGC
GACGGAGTGGGACGAGTTCAAAGAGGTGGACTACAAGCAGGTTTACGAAA
GCATGGTGAAGCCGTCGTTTGTGTTCGACGGGCGCAATATTCTGGACCAC
GCCGCACTGCGCGACATCGGCTTTGTGGTGTACGCCATTGGCAAGCCGCT
GGACACGAAGCTGAGCACGGCGTGA
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