Gcaud7603.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7603.t1
Unique NameGcaud7603.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1007_length_15157_cov_3.910726contigNODE_1007_length_15157_cov_3.910726:1982..2689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704052.1
Max annot lvl2759|Eukaryota
Evalue8.4e-20
EggNOG OGs28PNT@1|root,2QWAW@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7603Gcaud7603Gracilaria caudata M_176_S67 malegeneNODE_1007_length_15157_cov_3.910726 1982..2689 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7603.t1.stop1Gcaud7603.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1007_length_15157_cov_3.910726 1982..1984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7603.t1.CDS1Gcaud7603.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1007_length_15157_cov_3.910726 1982..2689 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7603.t1.exon1Gcaud7603.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1007_length_15157_cov_3.910726 1982..2689 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7603.t1.start1Gcaud7603.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1007_length_15157_cov_3.910726 2687..2689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7603.t1Gcaud7603.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1007_length_15157_cov_3.910726 1982..2689 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7603.t1 ID=Gcaud7603.t1|Name=Gcaud7603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
LGATHGALLDRSDTPIERVVRAKLGYAPVIARSRVAADAGNGLFVSGRAG
AGCVLALFPGVFYQPSELPQQLSDLAIARYDGVVIDSSHEISINVTFDEK
QRKQLYHPFGTAHYANHGTPNALQFLLDVRSGALPAHLRHLMPVRRAMRS
GARVFGAWADLAMRQRVEGVEMFTKQGDDVLRTVALVALRDIEHDEEVLF
NYRFNPNVTLPEWYSDPEPRISERRWHSSSRGALF*
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spliced messenger RNA

>Gcaud7603.t1 ID=Gcaud7603.t1|Name=Gcaud7603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_1007_length_15157_cov_3.910726:1982..2689- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGGCGCCACGCACGGCGCGTTGCTCGACCGCTCGGACACGCCCATCGA
GCGCGTGGTGCGCGCCAAGCTGGGCTACGCGCCCGTGATTGCGCGCTCGC
GCGTGGCGGCGGACGCGGGCAACGGACTGTTCGTGAGCGGACGCGCAGGC
GCCGGGTGCGTGCTGGCGCTGTTTCCGGGCGTGTTTTATCAGCCCAGTGA
GCTGCCGCAGCAGCTTTCGGATCTGGCCATTGCGCGCTACGACGGGGTGG
TGATCGACTCGTCGCATGAAATAAGCATCAATGTGACGTTTGATGAAAAG
CAGCGAAAACAACTGTACCATCCGTTTGGCACCGCGCACTACGCGAACCA
CGGCACGCCCAACGCGCTGCAATTCCTGCTGGACGTGCGCAGCGGCGCGT
TGCCAGCGCACCTGCGCCACCTGATGCCGGTGCGACGCGCGATGCGCTCG
GGCGCGCGCGTGTTTGGCGCGTGGGCGGATCTGGCGATGAGACAGCGCGT
GGAGGGCGTGGAGATGTTCACCAAACAGGGCGACGACGTGCTGCGCACGG
TGGCGCTGGTGGCGTTGCGCGACATTGAACACGACGAGGAGGTGCTGTTT
AACTATCGCTTCAACCCGAACGTGACGCTGCCGGAGTGGTATAGCGACCC
GGAGCCGCGCATTAGCGAGCGGCGGTGGCACTCGTCGTCGCGCGGAGCGC
TGTTTTAG
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protein sequence of Gcaud7603.t1

>Gcaud7603.t1 ID=Gcaud7603.t1|Name=Gcaud7603.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
LGATHGALLDRSDTPIERVVRAKLGYAPVIARSRVAADAGNGLFVSGRAG
AGCVLALFPGVFYQPSELPQQLSDLAIARYDGVVIDSSHEISINVTFDEK
QRKQLYHPFGTAHYANHGTPNALQFLLDVRSGALPAHLRHLMPVRRAMRS
GARVFGAWADLAMRQRVEGVEMFTKQGDDVLRTVALVALRDIEHDEEVLF
NYRFNPNVTLPEWYSDPEPRISERRWHSSSRGALF*
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mRNA from alignment at NODE_1007_length_15157_cov_3.910726:1982..2689-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7603.t1 ID=Gcaud7603.t1|Name=Gcaud7603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_1007_length_15157_cov_3.910726:1982..2689- (Gracilaria caudata M_176_S67 male)
CTGGGCGCCACGCACGGCGCGTTGCTCGACCGCTCGGACACGCCCATCGA
GCGCGTGGTGCGCGCCAAGCTGGGCTACGCGCCCGTGATTGCGCGCTCGC
GCGTGGCGGCGGACGCGGGCAACGGACTGTTCGTGAGCGGACGCGCAGGC
GCCGGGTGCGTGCTGGCGCTGTTTCCGGGCGTGTTTTATCAGCCCAGTGA
GCTGCCGCAGCAGCTTTCGGATCTGGCCATTGCGCGCTACGACGGGGTGG
TGATCGACTCGTCGCATGAAATAAGCATCAATGTGACGTTTGATGAAAAG
CAGCGAAAACAACTGTACCATCCGTTTGGCACCGCGCACTACGCGAACCA
CGGCACGCCCAACGCGCTGCAATTCCTGCTGGACGTGCGCAGCGGCGCGT
TGCCAGCGCACCTGCGCCACCTGATGCCGGTGCGACGCGCGATGCGCTCG
GGCGCGCGCGTGTTTGGCGCGTGGGCGGATCTGGCGATGAGACAGCGCGT
GGAGGGCGTGGAGATGTTCACCAAACAGGGCGACGACGTGCTGCGCACGG
TGGCGCTGGTGGCGTTGCGCGACATTGAACACGACGAGGAGGTGCTGTTT
AACTATCGCTTCAACCCGAACGTGACGCTGCCGGAGTGGTATAGCGACCC
GGAGCCGCGCATTAGCGAGCGGCGGTGGCACTCGTCGTCGCGCGGAGCGC
TGTTTTAG
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Coding sequence (CDS) from alignment at NODE_1007_length_15157_cov_3.910726:1982..2689-

>Gcaud7603.t1 ID=Gcaud7603.t1|Name=Gcaud7603.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_1007_length_15157_cov_3.910726:1982..2689- (Gracilaria caudata M_176_S67 male)
CTGGGCGCCACGCACGGCGCGTTGCTCGACCGCTCGGACACGCCCATCGA
GCGCGTGGTGCGCGCCAAGCTGGGCTACGCGCCCGTGATTGCGCGCTCGC
GCGTGGCGGCGGACGCGGGCAACGGACTGTTCGTGAGCGGACGCGCAGGC
GCCGGGTGCGTGCTGGCGCTGTTTCCGGGCGTGTTTTATCAGCCCAGTGA
GCTGCCGCAGCAGCTTTCGGATCTGGCCATTGCGCGCTACGACGGGGTGG
TGATCGACTCGTCGCATGAAATAAGCATCAATGTGACGTTTGATGAAAAG
CAGCGAAAACAACTGTACCATCCGTTTGGCACCGCGCACTACGCGAACCA
CGGCACGCCCAACGCGCTGCAATTCCTGCTGGACGTGCGCAGCGGCGCGT
TGCCAGCGCACCTGCGCCACCTGATGCCGGTGCGACGCGCGATGCGCTCG
GGCGCGCGCGTGTTTGGCGCGTGGGCGGATCTGGCGATGAGACAGCGCGT
GGAGGGCGTGGAGATGTTCACCAAACAGGGCGACGACGTGCTGCGCACGG
TGGCGCTGGTGGCGTTGCGCGACATTGAACACGACGAGGAGGTGCTGTTT
AACTATCGCTTCAACCCGAACGTGACGCTGCCGGAGTGGTATAGCGACCC
GGAGCCGCGCATTAGCGAGCGGCGGTGGCACTCGTCGTCGCGCGGAGCGC
TGTTTTAG
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