Gcaud7600.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7600.t1
Unique NameGcaud7600.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length533
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1181_length_12913_cov_3.700515contigNODE_1181_length_12913_cov_3.700515:9003..10714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702951.1
PFAMsAcatn
Max annot lvl2759|Eukaryota
KEGG koko:K03372
KEGG TC2.A.1.25
KEGG Pathwayko00604,ko01100,map00604,map01100
GOsGO:0000295,GO:0003674,GO:0005215,GO:0005346,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006862,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0008521,GO:0015075,GO:0015077,GO:0015078,GO:0015215,GO:0015216,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015605,GO:0015672,GO:0015711,GO:0015748,GO:0015865,GO:0015868,GO:0015876,GO:0015916,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0034220,GO:0035348,GO:0042886,GO:0042887,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051503,GO:0055085,GO:0071077,GO:0071106,GO:0071702,GO:0071705,GO:0071944,GO:0072348,GO:0072530,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1901264,GO:1901337,GO:1901505,GO:1901679,GO:1901682,GO:1902600
Evalue4.63e-100
EggNOG OGsCOG0477@1|root,KOG3574@2759|Eukaryota
Descriptionacetyl-CoA transmembrane transporter activity
COG categoryEGP
BRITEko00000,ko00001,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7600Gcaud7600Gracilaria caudata M_176_S67 malegeneNODE_1181_length_12913_cov_3.700515 9003..10714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7600.t1Gcaud7600.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1181_length_12913_cov_3.700515 9003..10714 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7600.t1.start1Gcaud7600.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1181_length_12913_cov_3.700515 9003..9005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7600.t1.CDS1Gcaud7600.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1181_length_12913_cov_3.700515 9003..9975 +
Gcaud7600.t1.CDS2Gcaud7600.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1181_length_12913_cov_3.700515 10089..10714 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7600.t1.exon1Gcaud7600.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1181_length_12913_cov_3.700515 9003..9975 +
Gcaud7600.t1.exon2Gcaud7600.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1181_length_12913_cov_3.700515 10089..10714 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7600.t1.intron1Gcaud7600.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1181_length_12913_cov_3.700515 9976..10088 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7600.t1.stop1Gcaud7600.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1181_length_12913_cov_3.700515 10712..10714 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7600.t1 ID=Gcaud7600.t1|Name=Gcaud7600.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=533bp
MVARRSVSSVVSLGRSDVEIPDSVHAQPAQPAKSTSGWYEDRHSIILLVL
LYAAQGLPVGFAFGSIPLLLKERGSSYADLAQFSFASMPYSLKLIIAPFV
DAFYSASFGRRKSWIVPVQMAIGCVMLFFSSAIHEWVAHGNVAALAPTFF
FLIALVATQDIAVDGWSLTMLKKENVAYASTCQSLGLSIGYFATFTIFLA
FHNDIFCDTYVRPLMVWSNSSGALVDLQLALRLVGIFYLSLTTFVTFGKN
ENTAHAKKSDDSNSDHESSDEDSSSSSRSLSALSALDNIRNTYRDVLVVV
RLPAVQALVVALLIAKVGFSAYDNVLSLKLLELGFSKESMASIAVIQAPF
TIIGTVITGRLVAEKSPIAVYLVGYCCRLLLSLSGPAFVGWLSRHNGMVT
PLYYVLTLVMTILYSLAAECLMFIGMGAFFLNISSSSVHVAGSYLTLLNT
SSNMGGLWHKAIALWLVDKLTVRQQCVLEADAPEGSLCPILYDGYYALSM
MLVPVAVLVGVLLMRRLPKLKSLPESAWRASQ*
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spliced messenger RNA

>Gcaud7600.t1 ID=Gcaud7600.t1|Name=Gcaud7600.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at NODE_1181_length_12913_cov_3.700515:9003..10714+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGCGAAGGTCCGTTTCGTCCGTCGTCTCGCTAGGGAGGTCCGA
CGTCGAGATTCCAGACTCTGTGCATGCACAACCTGCGCAGCCCGCGAAAA
GCACTTCTGGTTGGTATGAAGACCGCCACTCGATTATCCTTCTCGTGCTG
CTTTACGCGGCGCAGGGACTGCCGGTTGGATTCGCGTTCGGATCCATCCC
GTTGCTTCTCAAAGAACGCGGCTCTTCGTACGCCGACTTGGCTCAATTCT
CATTTGCGAGCATGCCATACTCGTTAAAACTGATCATTGCTCCGTTTGTT
GACGCCTTTTACTCGGCGTCTTTCGGGCGTCGCAAGTCGTGGATTGTGCC
GGTGCAGATGGCGATTGGTTGCGTGATGCTGTTCTTCTCGTCGGCCATTC
ATGAGTGGGTTGCTCATGGAAACGTCGCTGCGCTCGCGCCCACGTTTTTC
TTTCTGATTGCTCTGGTGGCCACGCAGGATATTGCTGTGGATGGCTGGTC
GCTCACCATGCTGAAGAAGGAGAATGTTGCGTACGCAAGCACGTGTCAGT
CGCTTGGTCTTTCCATCGGTTACTTTGCCACTTTTACCATCTTTCTGGCG
TTTCACAACGACATTTTCTGCGACACGTACGTGCGACCATTAATGGTGTG
GAGTAATTCCAGCGGCGCGTTGGTCGATTTGCAGCTCGCGCTTCGTCTGG
TTGGCATATTCTATCTGTCGCTTACGACGTTTGTGACGTTTGGGAAGAAC
GAGAACACTGCGCATGCGAAGAAGTCGGACGACTCGAACAGTGACCACGA
GTCTAGCGACGAGGATTCTTCGTCTAGCTCGCGCTCGCTGTCAGCGCTTT
CTGCTCTGGATAACATTCGAAATACGTACCGCGACGTGCTTGTGGTGGTG
CGTTTACCGGCTGTGCAGGCGTTGGTGGTGGCTTTGTTGATAGCCAAAGT
GGGCTTTTCTGCGTATGACAATGTGCTGTCGCTGAAGCTGCTGGAGCTTG
GGTTTTCCAAGGAAAGCATGGCGTCCATCGCGGTGATACAGGCACCGTTC
ACCATCATCGGAACGGTGATCACTGGGCGGCTGGTGGCGGAGAAATCGCC
GATTGCGGTGTACCTGGTTGGGTACTGTTGTCGACTGCTGCTGAGCTTGA
GCGGGCCGGCATTTGTGGGGTGGCTGTCCAGACACAACGGGATGGTGACG
CCGCTGTACTACGTGCTGACGCTTGTGATGACGATCCTGTACAGCTTGGC
GGCCGAGTGCCTAATGTTCATCGGGATGGGGGCGTTCTTCCTGAACATAT
CAAGCTCGTCCGTTCACGTGGCCGGGTCGTACCTGACGCTGCTGAACACG
AGCTCCAACATGGGCGGTTTGTGGCACAAGGCGATTGCGCTGTGGCTGGT
GGACAAGCTGACGGTTCGGCAACAGTGTGTGCTGGAGGCCGACGCGCCCG
AGGGCAGTTTGTGTCCGATTTTGTATGACGGGTACTACGCGCTGTCGATG
ATGCTGGTGCCCGTGGCGGTTTTGGTGGGAGTTTTGCTGATGAGGAGGCT
GCCGAAGCTGAAGAGTTTACCGGAGTCGGCTTGGCGAGCGTCGCAATAG
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protein sequence of Gcaud7600.t1

>Gcaud7600.t1 ID=Gcaud7600.t1|Name=Gcaud7600.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=533bp
MVARRSVSSVVSLGRSDVEIPDSVHAQPAQPAKSTSGWYEDRHSIILLVL
LYAAQGLPVGFAFGSIPLLLKERGSSYADLAQFSFASMPYSLKLIIAPFV
DAFYSASFGRRKSWIVPVQMAIGCVMLFFSSAIHEWVAHGNVAALAPTFF
FLIALVATQDIAVDGWSLTMLKKENVAYASTCQSLGLSIGYFATFTIFLA
FHNDIFCDTYVRPLMVWSNSSGALVDLQLALRLVGIFYLSLTTFVTFGKN
ENTAHAKKSDDSNSDHESSDEDSSSSSRSLSALSALDNIRNTYRDVLVVV
RLPAVQALVVALLIAKVGFSAYDNVLSLKLLELGFSKESMASIAVIQAPF
TIIGTVITGRLVAEKSPIAVYLVGYCCRLLLSLSGPAFVGWLSRHNGMVT
PLYYVLTLVMTILYSLAAECLMFIGMGAFFLNISSSSVHVAGSYLTLLNT
SSNMGGLWHKAIALWLVDKLTVRQQCVLEADAPEGSLCPILYDGYYALSM
MLVPVAVLVGVLLMRRLPKLKSLPESAWRASQ*
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mRNA from alignment at NODE_1181_length_12913_cov_3.700515:9003..10714+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7600.t1 ID=Gcaud7600.t1|Name=Gcaud7600.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1712bp|location=Sequence derived from alignment at NODE_1181_length_12913_cov_3.700515:9003..10714+ (Gracilaria caudata M_176_S67 male)
ATGGTGGCGCGAAGGTCCGTTTCGTCCGTCGTCTCGCTAGGGAGGTCCGA
CGTCGAGATTCCAGACTCTGTGCATGCACAACCTGCGCAGCCCGCGAAAA
GCACTTCTGGTTGGTATGAAGACCGCCACTCGATTATCCTTCTCGTGCTG
CTTTACGCGGCGCAGGGACTGCCGGTTGGATTCGCGTTCGGATCCATCCC
GTTGCTTCTCAAAGAACGCGGCTCTTCGTACGCCGACTTGGCTCAATTCT
CATTTGCGAGCATGCCATACTCGTTAAAACTGATCATTGCTCCGTTTGTT
GACGCCTTTTACTCGGCGTCTTTCGGGCGTCGCAAGTCGTGGATTGTGCC
GGTGCAGATGGCGATTGGTTGCGTGATGCTGTTCTTCTCGTCGGCCATTC
ATGAGTGGGTTGCTCATGGAAACGTCGCTGCGCTCGCGCCCACGTTTTTC
TTTCTGATTGCTCTGGTGGCCACGCAGGATATTGCTGTGGATGGCTGGTC
GCTCACCATGCTGAAGAAGGAGAATGTTGCGTACGCAAGCACGTGTCAGT
CGCTTGGTCTTTCCATCGGTTACTTTGCCACTTTTACCATCTTTCTGGCG
TTTCACAACGACATTTTCTGCGACACGTACGTGCGACCATTAATGGTGTG
GAGTAATTCCAGCGGCGCGTTGGTCGATTTGCAGCTCGCGCTTCGTCTGG
TTGGCATATTCTATCTGTCGCTTACGACGTTTGTGACGTTTGGGAAGAAC
GAGAACACTGCGCATGCGAAGAAGTCGGACGACTCGAACAGTGACCACGA
GTCTAGCGACGAGGATTCTTCGTCTAGCTCGCGCTCGCTGTCAGCGCTTT
CTGCTCTGGATAACATTCGAAATACGTACCGCGACGTGCTTGTGGTGGTG
CGTTTACCGGCTGTGCAGGCGTTGGTGGTGGCTTTGTTGATAGCCAAAGT
GGGCTTTTCTGCGTATGACAATGGTAAGTGTTGTTGCAACTGAGACGAGT
ATGAGCGGAAAGGAGCGGCGACACAATACTGACTGTTGTTCTGTGTGACA
AATTGCGCGTTGGTTGTTTGGTGAACATTGTGATAGTGCTGTCGCTGAAG
CTGCTGGAGCTTGGGTTTTCCAAGGAAAGCATGGCGTCCATCGCGGTGAT
ACAGGCACCGTTCACCATCATCGGAACGGTGATCACTGGGCGGCTGGTGG
CGGAGAAATCGCCGATTGCGGTGTACCTGGTTGGGTACTGTTGTCGACTG
CTGCTGAGCTTGAGCGGGCCGGCATTTGTGGGGTGGCTGTCCAGACACAA
CGGGATGGTGACGCCGCTGTACTACGTGCTGACGCTTGTGATGACGATCC
TGTACAGCTTGGCGGCCGAGTGCCTAATGTTCATCGGGATGGGGGCGTTC
TTCCTGAACATATCAAGCTCGTCCGTTCACGTGGCCGGGTCGTACCTGAC
GCTGCTGAACACGAGCTCCAACATGGGCGGTTTGTGGCACAAGGCGATTG
CGCTGTGGCTGGTGGACAAGCTGACGGTTCGGCAACAGTGTGTGCTGGAG
GCCGACGCGCCCGAGGGCAGTTTGTGTCCGATTTTGTATGACGGGTACTA
CGCGCTGTCGATGATGCTGGTGCCCGTGGCGGTTTTGGTGGGAGTTTTGC
TGATGAGGAGGCTGCCGAAGCTGAAGAGTTTACCGGAGTCGGCTTGGCGA
GCGTCGCAATAG
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Coding sequence (CDS) from alignment at NODE_1181_length_12913_cov_3.700515:9003..10714+

>Gcaud7600.t1 ID=Gcaud7600.t1|Name=Gcaud7600.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1599bp|location=Sequence derived from alignment at NODE_1181_length_12913_cov_3.700515:9003..10714+ (Gracilaria caudata M_176_S67 male)
ATGGTGGCGCGAAGGTCCGTTTCGTCCGTCGTCTCGCTAGGGAGGTCCGA
CGTCGAGATTCCAGACTCTGTGCATGCACAACCTGCGCAGCCCGCGAAAA
GCACTTCTGGTTGGTATGAAGACCGCCACTCGATTATCCTTCTCGTGCTG
CTTTACGCGGCGCAGGGACTGCCGGTTGGATTCGCGTTCGGATCCATCCC
GTTGCTTCTCAAAGAACGCGGCTCTTCGTACGCCGACTTGGCTCAATTCT
CATTTGCGAGCATGCCATACTCGTTAAAACTGATCATTGCTCCGTTTGTT
GACGCCTTTTACTCGGCGTCTTTCGGGCGTCGCAAGTCGTGGATTGTGCC
GGTGCAGATGGCGATTGGTTGCGTGATGCTGTTCTTCTCGTCGGCCATTC
ATGAGTGGGTTGCTCATGGAAACGTCGCTGCGCTCGCGCCCACGTTTTTC
TTTCTGATTGCTCTGGTGGCCACGCAGGATATTGCTGTGGATGGCTGGTC
GCTCACCATGCTGAAGAAGGAGAATGTTGCGTACGCAAGCACGTGTCAGT
CGCTTGGTCTTTCCATCGGTTACTTTGCCACTTTTACCATCTTTCTGGCG
TTTCACAACGACATTTTCTGCGACACGTACGTGCGACCATTAATGGTGTG
GAGTAATTCCAGCGGCGCGTTGGTCGATTTGCAGCTCGCGCTTCGTCTGG
TTGGCATATTCTATCTGTCGCTTACGACGTTTGTGACGTTTGGGAAGAAC
GAGAACACTGCGCATGCGAAGAAGTCGGACGACTCGAACAGTGACCACGA
GTCTAGCGACGAGGATTCTTCGTCTAGCTCGCGCTCGCTGTCAGCGCTTT
CTGCTCTGGATAACATTCGAAATACGTACCGCGACGTGCTTGTGGTGGTG
CGTTTACCGGCTGTGCAGGCGTTGGTGGTGGCTTTGTTGATAGCCAAAGT
GGGCTTTTCTGCGTATGACAATGTGCTGTCGCTGAAGCTGCTGGAGCTTG
GGTTTTCCAAGGAAAGCATGGCGTCCATCGCGGTGATACAGGCACCGTTC
ACCATCATCGGAACGGTGATCACTGGGCGGCTGGTGGCGGAGAAATCGCC
GATTGCGGTGTACCTGGTTGGGTACTGTTGTCGACTGCTGCTGAGCTTGA
GCGGGCCGGCATTTGTGGGGTGGCTGTCCAGACACAACGGGATGGTGACG
CCGCTGTACTACGTGCTGACGCTTGTGATGACGATCCTGTACAGCTTGGC
GGCCGAGTGCCTAATGTTCATCGGGATGGGGGCGTTCTTCCTGAACATAT
CAAGCTCGTCCGTTCACGTGGCCGGGTCGTACCTGACGCTGCTGAACACG
AGCTCCAACATGGGCGGTTTGTGGCACAAGGCGATTGCGCTGTGGCTGGT
GGACAAGCTGACGGTTCGGCAACAGTGTGTGCTGGAGGCCGACGCGCCCG
AGGGCAGTTTGTGTCCGATTTTGTATGACGGGTACTACGCGCTGTCGATG
ATGCTGGTGCCCGTGGCGGTTTTGGTGGGAGTTTTGCTGATGAGGAGGCT
GCCGAAGCTGAAGAGTTTACCGGAGTCGGCTTGGCGAGCGTCGCAATAG
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