Gcaud7596.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7596.t1
Unique Name	Gcaud7596.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	368

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4075_length_2607_cov_4.261129	contig	NODE_4075_length_2607_cov_4.261129:816..1919 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36331.EPrPI00000014680
Max annot lvl	121069\|Pythiales
Evalue	4.12e-06
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,1ME2R@121069\|Pythiales
Description	function. Source PGD
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7596	Gcaud7596	Gracilaria caudata M_176_S67 male	gene	NODE_4075_length_2607_cov_4.261129 816..1919 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7596.t1.stop1	Gcaud7596.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4075_length_2607_cov_4.261129 816..818 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7596.t1.CDS1	Gcaud7596.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4075_length_2607_cov_4.261129 816..1919 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7596.t1.exon1	Gcaud7596.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4075_length_2607_cov_4.261129 816..1919 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7596.t1.start1	Gcaud7596.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4075_length_2607_cov_4.261129 1917..1919 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7596.t1	Gcaud7596.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4075_length_2607_cov_4.261129 816..1919 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4075_length_2607_cov_4.261129:816..1919-
coding sequence from alignment at NODE_4075_length_2607_cov_4.261129:816..1919-

mRNA sequence

>Gcaud7596.t1 ID=Gcaud7596.t1|Name=Gcaud7596.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=368bp
MKCFVPLFVCLLLSVLSPTAAHQAIAYPWPISRNNACRLGKFKDCPGPCP
DSELRADMSADMPSITLTRNQFVTINTKRNNHGGGFSRWTIVNVDDMYDK
SAHDANAFLWTCADLNEQKCDSLNYKRDCEFDGNGEFYQHDIQIPDVYPD
GVYVLGWAWYGGTQGHGRGGDFGDYYDCMYINIQGGDLEDSYQPKFEMGP
SDHGEDGKCAARTTQLGDCLREPCNGREAGMRVPSEFENNRQPSPIRQGS
FVPHQIARPPATAPTVYGLTMRQTNNPSFVYATSTDGTVANLRLRGQAID
LTCDVEGSIDKVEFYKHGEELLGTDTNAPYSIRYDYEIEDDIYLLSCATY
GTDGSVQWARLEVWQTQ*

spliced messenger RNA

>Gcaud7596.t1 ID=Gcaud7596.t1|Name=Gcaud7596.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_4075_length_2607_cov_4.261129:816..1919- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGCTTTGTGCCTTTGTTCGTGTGTCTGTTGCTGAGTGTGTTGTC
GCCCACTGCGGCGCATCAGGCCATTGCGTATCCATGGCCCATATCAAGAA
ATAACGCCTGTCGACTGGGCAAGTTCAAGGACTGTCCTGGACCGTGTCCG
GATAGCGAGCTTCGTGCCGACATGTCTGCCGACATGCCCTCCATCACTCT
CACCAGAAACCAGTTCGTCACCATCAACACCAAGCGTAACAACCACGGCG
GCGGCTTTTCTCGATGGACCATTGTCAATGTGGACGACATGTACGACAAG
TCTGCGCATGATGCCAACGCCTTTCTGTGGACGTGTGCCGATCTGAACGA
ACAGAAGTGTGACAGTCTCAACTACAAGCGCGATTGTGAATTCGATGGCA
ACGGTGAATTCTATCAGCATGACATTCAGATTCCGGACGTGTATCCCGAC
GGAGTGTACGTGTTGGGCTGGGCGTGGTACGGCGGTACGCAGGGTCATGG
ACGAGGTGGAGACTTTGGCGATTACTACGATTGCATGTACATCAACATTC
AAGGCGGCGATCTGGAAGATTCGTACCAACCCAAGTTCGAGATGGGACCC
TCCGATCACGGTGAAGACGGAAAGTGTGCGGCGCGTACCACCCAACTGGG
AGACTGTCTTCGTGAGCCCTGCAACGGACGTGAGGCTGGCATGAGGGTGC
CCAGCGAATTCGAGAACAACAGGCAACCGTCTCCGATTCGTCAGGGCAGT
TTTGTGCCGCACCAGATTGCTCGACCGCCCGCGACTGCCCCAACGGTGTA
TGGACTTACCATGCGACAGACGAATAACCCGAGTTTTGTGTATGCCACCT
CCACGGACGGTACAGTTGCAAACCTGCGATTGAGAGGACAAGCGATTGAT
CTCACATGCGACGTTGAAGGCTCCATCGATAAGGTGGAGTTCTATAAGCA
CGGTGAGGAATTGCTTGGCACCGACACCAACGCTCCGTACAGTATTCGGT
ACGATTACGAGATTGAGGATGATATCTACTTGCTGTCGTGCGCAACTTAC
GGCACGGATGGCAGTGTACAGTGGGCTCGATTGGAAGTGTGGCAAACCCA
GTAA

protein sequence of Gcaud7596.t1

>Gcaud7596.t1 ID=Gcaud7596.t1|Name=Gcaud7596.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MKCFVPLFVCLLLSVLSPTAAHQAIAYPWPISRNNACRLGKFKDCPGPCP
DSELRADMSADMPSITLTRNQFVTINTKRNNHGGGFSRWTIVNVDDMYDK
SAHDANAFLWTCADLNEQKCDSLNYKRDCEFDGNGEFYQHDIQIPDVYPD
GVYVLGWAWYGGTQGHGRGGDFGDYYDCMYINIQGGDLEDSYQPKFEMGP
SDHGEDGKCAARTTQLGDCLREPCNGREAGMRVPSEFENNRQPSPIRQGS
FVPHQIARPPATAPTVYGLTMRQTNNPSFVYATSTDGTVANLRLRGQAID
LTCDVEGSIDKVEFYKHGEELLGTDTNAPYSIRYDYEIEDDIYLLSCATY
GTDGSVQWARLEVWQTQ*

mRNA from alignment at NODE_4075_length_2607_cov_4.261129:816..1919-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7596.t1 ID=Gcaud7596.t1|Name=Gcaud7596.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_4075_length_2607_cov_4.261129:816..1919- (Gracilaria caudata M_176_S67 male)
ATGAAGTGCTTTGTGCCTTTGTTCGTGTGTCTGTTGCTGAGTGTGTTGTC
GCCCACTGCGGCGCATCAGGCCATTGCGTATCCATGGCCCATATCAAGAA
ATAACGCCTGTCGACTGGGCAAGTTCAAGGACTGTCCTGGACCGTGTCCG
GATAGCGAGCTTCGTGCCGACATGTCTGCCGACATGCCCTCCATCACTCT
CACCAGAAACCAGTTCGTCACCATCAACACCAAGCGTAACAACCACGGCG
GCGGCTTTTCTCGATGGACCATTGTCAATGTGGACGACATGTACGACAAG
TCTGCGCATGATGCCAACGCCTTTCTGTGGACGTGTGCCGATCTGAACGA
ACAGAAGTGTGACAGTCTCAACTACAAGCGCGATTGTGAATTCGATGGCA
ACGGTGAATTCTATCAGCATGACATTCAGATTCCGGACGTGTATCCCGAC
GGAGTGTACGTGTTGGGCTGGGCGTGGTACGGCGGTACGCAGGGTCATGG
ACGAGGTGGAGACTTTGGCGATTACTACGATTGCATGTACATCAACATTC
AAGGCGGCGATCTGGAAGATTCGTACCAACCCAAGTTCGAGATGGGACCC
TCCGATCACGGTGAAGACGGAAAGTGTGCGGCGCGTACCACCCAACTGGG
AGACTGTCTTCGTGAGCCCTGCAACGGACGTGAGGCTGGCATGAGGGTGC
CCAGCGAATTCGAGAACAACAGGCAACCGTCTCCGATTCGTCAGGGCAGT
TTTGTGCCGCACCAGATTGCTCGACCGCCCGCGACTGCCCCAACGGTGTA
TGGACTTACCATGCGACAGACGAATAACCCGAGTTTTGTGTATGCCACCT
CCACGGACGGTACAGTTGCAAACCTGCGATTGAGAGGACAAGCGATTGAT
CTCACATGCGACGTTGAAGGCTCCATCGATAAGGTGGAGTTCTATAAGCA
CGGTGAGGAATTGCTTGGCACCGACACCAACGCTCCGTACAGTATTCGGT
ACGATTACGAGATTGAGGATGATATCTACTTGCTGTCGTGCGCAACTTAC
GGCACGGATGGCAGTGTACAGTGGGCTCGATTGGAAGTGTGGCAAACCCA
GTAA

Coding sequence (CDS) from alignment at NODE_4075_length_2607_cov_4.261129:816..1919-

>Gcaud7596.t1 ID=Gcaud7596.t1|Name=Gcaud7596.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1104bp|location=Sequence derived from alignment at NODE_4075_length_2607_cov_4.261129:816..1919- (Gracilaria caudata M_176_S67 male)
ATGAAGTGCTTTGTGCCTTTGTTCGTGTGTCTGTTGCTGAGTGTGTTGTC
GCCCACTGCGGCGCATCAGGCCATTGCGTATCCATGGCCCATATCAAGAA
ATAACGCCTGTCGACTGGGCAAGTTCAAGGACTGTCCTGGACCGTGTCCG
GATAGCGAGCTTCGTGCCGACATGTCTGCCGACATGCCCTCCATCACTCT
CACCAGAAACCAGTTCGTCACCATCAACACCAAGCGTAACAACCACGGCG
GCGGCTTTTCTCGATGGACCATTGTCAATGTGGACGACATGTACGACAAG
TCTGCGCATGATGCCAACGCCTTTCTGTGGACGTGTGCCGATCTGAACGA
ACAGAAGTGTGACAGTCTCAACTACAAGCGCGATTGTGAATTCGATGGCA
ACGGTGAATTCTATCAGCATGACATTCAGATTCCGGACGTGTATCCCGAC
GGAGTGTACGTGTTGGGCTGGGCGTGGTACGGCGGTACGCAGGGTCATGG
ACGAGGTGGAGACTTTGGCGATTACTACGATTGCATGTACATCAACATTC
AAGGCGGCGATCTGGAAGATTCGTACCAACCCAAGTTCGAGATGGGACCC
TCCGATCACGGTGAAGACGGAAAGTGTGCGGCGCGTACCACCCAACTGGG
AGACTGTCTTCGTGAGCCCTGCAACGGACGTGAGGCTGGCATGAGGGTGC
CCAGCGAATTCGAGAACAACAGGCAACCGTCTCCGATTCGTCAGGGCAGT
TTTGTGCCGCACCAGATTGCTCGACCGCCCGCGACTGCCCCAACGGTGTA
TGGACTTACCATGCGACAGACGAATAACCCGAGTTTTGTGTATGCCACCT
CCACGGACGGTACAGTTGCAAACCTGCGATTGAGAGGACAAGCGATTGAT
CTCACATGCGACGTTGAAGGCTCCATCGATAAGGTGGAGTTCTATAAGCA
CGGTGAGGAATTGCTTGGCACCGACACCAACGCTCCGTACAGTATTCGGT
ACGATTACGAGATTGAGGATGATATCTACTTGCTGTCGTGCGCAACTTAC
GGCACGGATGGCAGTGTACAGTGGGCTCGATTGGAAGTGTGGCAAACCCA
GTAA