Gcaud7593.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7593.t1
Unique Name	Gcaud7593.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	409

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_226_length_35554_cov_4.545132	contig	NODE_226_length_35554_cov_4.545132:29736..30962 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI50502
PFAMs	NIF
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K15731
Evalue	9.34e-59
EggNOG OGs	COG5190@1\|root,KOG1605@2759\|Eukaryota,3Q89F@4776\|Peronosporales
EC	3.1.3.16
Description	Nuclear LIM factor interactor-interacting protein
COG category	K
BRITE	ko00000,ko01000,ko01009,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7593	Gcaud7593	Gracilaria caudata M_176_S67 male	gene	NODE_226_length_35554_cov_4.545132 29736..30962 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7593.t1.start1	Gcaud7593.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_226_length_35554_cov_4.545132 29736..29738 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7593.t1.CDS1	Gcaud7593.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_226_length_35554_cov_4.545132 29736..30962 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7593.t1.exon1	Gcaud7593.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_226_length_35554_cov_4.545132 29736..30962 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7593.t1.stop1	Gcaud7593.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_226_length_35554_cov_4.545132 30960..30962 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7593.t1	Gcaud7593.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_226_length_35554_cov_4.545132 29736..30962 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_226_length_35554_cov_4.545132:29736..30962+
coding sequence from alignment at NODE_226_length_35554_cov_4.545132:29736..30962+

mRNA sequence

>Gcaud7593.t1 ID=Gcaud7593.t1|Name=Gcaud7593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=409bp
MSDSPDAASKAASEAAKVATSAENPQTLSSASTDFAAIAPDTPDPKTSNK
PSNPTATLSSELAAEAGCESFAEPSNSASRTLSSDSDDADTIVDEPPSKQ
PISPVSSASRQPPTPPLDIIHSVPNTSPVPPLSPVSDINAHTPRTGVFSI
FSPRNGKSISPLRRLFSPRWFSATPVERNTESTITNNSPPRRMNVVCSCF
ARPQTIDESLPDYDYVEHIKSLEPTYEPEPPLLPSPAPHAEDRICLVLDL
DETLVHSSFTPLPNADFEVPLDMQGEIHTVYVKKRPGVDNFLKKASEWFE
IVIFTASLALYANPVVDLLDPHNLVELRLYREHCVLIGGCYVKDIAKLGR
DLKRTVIIDNSPLSYVLQPENAIPISAFFTDDNDRELDKTLLLLEQARDL
EDVRKALT*

spliced messenger RNA

>Gcaud7593.t1 ID=Gcaud7593.t1|Name=Gcaud7593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at NODE_226_length_35554_cov_4.545132:29736..30962+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGATTCCCCCGACGCGGCTAGCAAAGCCGCATCGGAAGCTGCTAA
AGTAGCGACCTCTGCCGAAAATCCTCAAACCTTATCGTCCGCTTCAACCG
ACTTCGCCGCCATCGCACCCGATACCCCCGACCCCAAAACCTCCAACAAA
CCTTCCAACCCGACCGCCACTCTTAGCAGCGAGCTCGCAGCTGAAGCAGG
TTGCGAATCTTTTGCCGAGCCATCCAACTCCGCATCCAGGACATTGTCAT
CCGATTCCGATGATGCCGACACCATTGTCGATGAGCCCCCTTCCAAGCAA
CCCATATCGCCTGTTTCATCTGCTAGTCGGCAACCCCCAACCCCTCCTCT
TGATATCATTCATTCCGTTCCGAATACATCCCCAGTGCCCCCGCTCTCTC
CAGTTAGTGATATCAACGCACACACCCCTCGCACTGGCGTGTTTTCGATC
TTTTCTCCTCGTAATGGCAAGTCTATTTCACCACTGCGTCGTTTGTTTTC
TCCACGTTGGTTTAGTGCGACCCCCGTTGAACGCAACACAGAATCTACCA
TTACAAATAACAGCCCACCACGAAGAATGAACGTCGTTTGTTCTTGCTTC
GCTCGCCCACAGACAATAGACGAGTCCTTGCCAGATTATGACTATGTGGA
ACACATCAAAAGCCTCGAACCCACGTACGAACCAGAACCACCGCTCCTCC
CCAGTCCAGCACCGCACGCAGAGGATCGTATATGCTTAGTACTTGACCTC
GACGAGACGCTTGTTCATAGCAGCTTCACACCCTTACCCAATGCCGACTT
CGAGGTTCCCTTGGATATGCAAGGAGAGATTCATACTGTGTACGTCAAAA
AGCGCCCTGGAGTTGATAACTTTCTCAAAAAGGCTAGCGAATGGTTTGAG
ATTGTCATATTTACCGCTTCTCTGGCCTTGTACGCTAATCCGGTTGTTGA
TTTGCTTGATCCGCACAACCTCGTTGAGCTGAGACTGTACCGTGAGCACT
GCGTGTTGATAGGAGGTTGTTATGTGAAGGACATTGCCAAGCTTGGTCGC
GACTTGAAGAGAACGGTCATCATTGACAACAGCCCATTGAGTTACGTGCT
TCAGCCAGAGAACGCTATCCCCATCTCCGCATTTTTCACGGATGACAACG
ACAGGGAACTTGACAAGACACTACTACTCCTTGAACAGGCTAGAGATCTT
GAAGATGTCAGAAAGGCACTCACATAA

protein sequence of Gcaud7593.t1

>Gcaud7593.t1 ID=Gcaud7593.t1|Name=Gcaud7593.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=409bp
MSDSPDAASKAASEAAKVATSAENPQTLSSASTDFAAIAPDTPDPKTSNK
PSNPTATLSSELAAEAGCESFAEPSNSASRTLSSDSDDADTIVDEPPSKQ
PISPVSSASRQPPTPPLDIIHSVPNTSPVPPLSPVSDINAHTPRTGVFSI
FSPRNGKSISPLRRLFSPRWFSATPVERNTESTITNNSPPRRMNVVCSCF
ARPQTIDESLPDYDYVEHIKSLEPTYEPEPPLLPSPAPHAEDRICLVLDL
DETLVHSSFTPLPNADFEVPLDMQGEIHTVYVKKRPGVDNFLKKASEWFE
IVIFTASLALYANPVVDLLDPHNLVELRLYREHCVLIGGCYVKDIAKLGR
DLKRTVIIDNSPLSYVLQPENAIPISAFFTDDNDRELDKTLLLLEQARDL
EDVRKALT*

mRNA from alignment at NODE_226_length_35554_cov_4.545132:29736..30962+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7593.t1 ID=Gcaud7593.t1|Name=Gcaud7593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at NODE_226_length_35554_cov_4.545132:29736..30962+ (Gracilaria caudata M_176_S67 male)
ATGAGCGATTCCCCCGACGCGGCTAGCAAAGCCGCATCGGAAGCTGCTAA
AGTAGCGACCTCTGCCGAAAATCCTCAAACCTTATCGTCCGCTTCAACCG
ACTTCGCCGCCATCGCACCCGATACCCCCGACCCCAAAACCTCCAACAAA
CCTTCCAACCCGACCGCCACTCTTAGCAGCGAGCTCGCAGCTGAAGCAGG
TTGCGAATCTTTTGCCGAGCCATCCAACTCCGCATCCAGGACATTGTCAT
CCGATTCCGATGATGCCGACACCATTGTCGATGAGCCCCCTTCCAAGCAA
CCCATATCGCCTGTTTCATCTGCTAGTCGGCAACCCCCAACCCCTCCTCT
TGATATCATTCATTCCGTTCCGAATACATCCCCAGTGCCCCCGCTCTCTC
CAGTTAGTGATATCAACGCACACACCCCTCGCACTGGCGTGTTTTCGATC
TTTTCTCCTCGTAATGGCAAGTCTATTTCACCACTGCGTCGTTTGTTTTC
TCCACGTTGGTTTAGTGCGACCCCCGTTGAACGCAACACAGAATCTACCA
TTACAAATAACAGCCCACCACGAAGAATGAACGTCGTTTGTTCTTGCTTC
GCTCGCCCACAGACAATAGACGAGTCCTTGCCAGATTATGACTATGTGGA
ACACATCAAAAGCCTCGAACCCACGTACGAACCAGAACCACCGCTCCTCC
CCAGTCCAGCACCGCACGCAGAGGATCGTATATGCTTAGTACTTGACCTC
GACGAGACGCTTGTTCATAGCAGCTTCACACCCTTACCCAATGCCGACTT
CGAGGTTCCCTTGGATATGCAAGGAGAGATTCATACTGTGTACGTCAAAA
AGCGCCCTGGAGTTGATAACTTTCTCAAAAAGGCTAGCGAATGGTTTGAG
ATTGTCATATTTACCGCTTCTCTGGCCTTGTACGCTAATCCGGTTGTTGA
TTTGCTTGATCCGCACAACCTCGTTGAGCTGAGACTGTACCGTGAGCACT
GCGTGTTGATAGGAGGTTGTTATGTGAAGGACATTGCCAAGCTTGGTCGC
GACTTGAAGAGAACGGTCATCATTGACAACAGCCCATTGAGTTACGTGCT
TCAGCCAGAGAACGCTATCCCCATCTCCGCATTTTTCACGGATGACAACG
ACAGGGAACTTGACAAGACACTACTACTCCTTGAACAGGCTAGAGATCTT
GAAGATGTCAGAAAGGCACTCACATAA

Coding sequence (CDS) from alignment at NODE_226_length_35554_cov_4.545132:29736..30962+

>Gcaud7593.t1 ID=Gcaud7593.t1|Name=Gcaud7593.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1227bp|location=Sequence derived from alignment at NODE_226_length_35554_cov_4.545132:29736..30962+ (Gracilaria caudata M_176_S67 male)
ATGAGCGATTCCCCCGACGCGGCTAGCAAAGCCGCATCGGAAGCTGCTAA
AGTAGCGACCTCTGCCGAAAATCCTCAAACCTTATCGTCCGCTTCAACCG
ACTTCGCCGCCATCGCACCCGATACCCCCGACCCCAAAACCTCCAACAAA
CCTTCCAACCCGACCGCCACTCTTAGCAGCGAGCTCGCAGCTGAAGCAGG
TTGCGAATCTTTTGCCGAGCCATCCAACTCCGCATCCAGGACATTGTCAT
CCGATTCCGATGATGCCGACACCATTGTCGATGAGCCCCCTTCCAAGCAA
CCCATATCGCCTGTTTCATCTGCTAGTCGGCAACCCCCAACCCCTCCTCT
TGATATCATTCATTCCGTTCCGAATACATCCCCAGTGCCCCCGCTCTCTC
CAGTTAGTGATATCAACGCACACACCCCTCGCACTGGCGTGTTTTCGATC
TTTTCTCCTCGTAATGGCAAGTCTATTTCACCACTGCGTCGTTTGTTTTC
TCCACGTTGGTTTAGTGCGACCCCCGTTGAACGCAACACAGAATCTACCA
TTACAAATAACAGCCCACCACGAAGAATGAACGTCGTTTGTTCTTGCTTC
GCTCGCCCACAGACAATAGACGAGTCCTTGCCAGATTATGACTATGTGGA
ACACATCAAAAGCCTCGAACCCACGTACGAACCAGAACCACCGCTCCTCC
CCAGTCCAGCACCGCACGCAGAGGATCGTATATGCTTAGTACTTGACCTC
GACGAGACGCTTGTTCATAGCAGCTTCACACCCTTACCCAATGCCGACTT
CGAGGTTCCCTTGGATATGCAAGGAGAGATTCATACTGTGTACGTCAAAA
AGCGCCCTGGAGTTGATAACTTTCTCAAAAAGGCTAGCGAATGGTTTGAG
ATTGTCATATTTACCGCTTCTCTGGCCTTGTACGCTAATCCGGTTGTTGA
TTTGCTTGATCCGCACAACCTCGTTGAGCTGAGACTGTACCGTGAGCACT
GCGTGTTGATAGGAGGTTGTTATGTGAAGGACATTGCCAAGCTTGGTCGC
GACTTGAAGAGAACGGTCATCATTGACAACAGCCCATTGAGTTACGTGCT
TCAGCCAGAGAACGCTATCCCCATCTCCGCATTTTTCACGGATGACAACG
ACAGGGAACTTGACAAGACACTACTACTCCTTGAACAGGCTAGAGATCTT
GAAGATGTCAGAAAGGCACTCACATAA