Gcaud7590.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7590.t1
Unique Name	Gcaud7590.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	159

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_226_length_35554_cov_4.545132	contig	NODE_226_length_35554_cov_4.545132:22527..23083 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6183.Smp_077090.1
Preferred name	ISCU
PFAMs	NifU_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K22068
GOs	GO:0003674,GO:0003824,GO:0005198,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0016740,GO:0016782,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0031974,GO:0032947,GO:0032991,GO:0036455,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0097428,GO:0098771,GO:1901564,GO:1990221
Evalue	3e-70
EggNOG OGs	COG0822@1\|root,KOG3361@2759\|Eukaryota,3A1JG@33154\|Opisthokonta,3BPFS@33208\|Metazoa,3D6D7@33213\|Bilateria
Description	iron-sulfur transferase activity
COG category	C
BRITE	ko00000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7590	Gcaud7590	Gracilaria caudata M_176_S67 male	gene	NODE_226_length_35554_cov_4.545132 22527..23083 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7590.t1	Gcaud7590.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_226_length_35554_cov_4.545132 22527..23083 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7590.t1.stop1	Gcaud7590.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_226_length_35554_cov_4.545132 22527..22529 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7590.t1.CDS1	Gcaud7590.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_226_length_35554_cov_4.545132 22527..22887 -
Gcaud7590.t1.CDS2	Gcaud7590.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_226_length_35554_cov_4.545132 22968..23083 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7590.t1.exon1	Gcaud7590.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_226_length_35554_cov_4.545132 22527..22887 -
Gcaud7590.t1.exon2	Gcaud7590.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_226_length_35554_cov_4.545132 22968..23083 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7590.t1.intron1	Gcaud7590.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_226_length_35554_cov_4.545132 22888..22967 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7590.t1.start1	Gcaud7590.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_226_length_35554_cov_4.545132 23081..23083 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_226_length_35554_cov_4.545132:22527..23083-
coding sequence from alignment at NODE_226_length_35554_cov_4.545132:22527..23083-

mRNA sequence

>Gcaud7590.t1 ID=Gcaud7590.t1|Name=Gcaud7590.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=159bp
MIRTTATALNRGQTSAIRALAKRSRCYHDKVIDHYENPRNVGSLDKEDKN
VGTGLVGAPACGDVMKLQIRVNEDGEIVDSAFKTFGCGSAIASSSLATEW
VKGRNVDDAKNIKNSDIAKELKLPPVKLHCSMLAEDAIKAAIKDLKEKQE
RTDGAPSS*

spliced messenger RNA

>Gcaud7590.t1 ID=Gcaud7590.t1|Name=Gcaud7590.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=477bp|location=Sequence derived from alignment at NODE_226_length_35554_cov_4.545132:22527..23083- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAGGACCACTGCAACCGCACTGAACAGGGGTCAAACTTCTGCTAT
CAGAGCACTGGCCAAGCGCAGTCGTTGTTACCACGACAAAGTAATCGACC
ACTACGAGAACCCGAGAAATGTGGGAAGCCTTGACAAAGAAGACAAGAAC
GTCGGCACCGGTCTGGTTGGAGCCCCCGCCTGCGGCGATGTCATGAAACT
TCAAATCCGAGTCAATGAGGATGGCGAAATCGTCGATTCAGCATTTAAGA
CATTCGGGTGTGGTTCTGCCATCGCATCTTCTTCGTTAGCCACAGAATGG
GTGAAGGGAAGAAATGTCGACGACGCTAAGAATATTAAAAACAGCGACAT
AGCAAAGGAGCTCAAGCTACCCCCGGTCAAACTGCACTGCTCGATGCTGG
CGGAGGACGCTATCAAGGCTGCCATTAAGGACCTTAAGGAGAAGCAAGAG
AGAACGGATGGCGCACCATCATCCTAA

protein sequence of Gcaud7590.t1

>Gcaud7590.t1 ID=Gcaud7590.t1|Name=Gcaud7590.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=159bp
MIRTTATALNRGQTSAIRALAKRSRCYHDKVIDHYENPRNVGSLDKEDKN
VGTGLVGAPACGDVMKLQIRVNEDGEIVDSAFKTFGCGSAIASSSLATEW
VKGRNVDDAKNIKNSDIAKELKLPPVKLHCSMLAEDAIKAAIKDLKEKQE
RTDGAPSS*

mRNA from alignment at NODE_226_length_35554_cov_4.545132:22527..23083-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7590.t1 ID=Gcaud7590.t1|Name=Gcaud7590.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=557bp|location=Sequence derived from alignment at NODE_226_length_35554_cov_4.545132:22527..23083- (Gracilaria caudata M_176_S67 male)
ATGATCAGGACCACTGCAACCGCACTGAACAGGGGTCAAACTTCTGCTAT
CAGAGCACTGGCCAAGCGCAGTCGTTGTTACCACGACAAAGTAATCGACC
ACTACGAGAACCCGAGGTAAGTTGGTGCGTCATAACCCGCTGCTGTAATC
CAGCAACCACGAAATGGCTAACATCTTCTCCCTTCAAAAACGAAAGAAAT
GTGGGAAGCCTTGACAAAGAAGACAAGAACGTCGGCACCGGTCTGGTTGG
AGCCCCCGCCTGCGGCGATGTCATGAAACTTCAAATCCGAGTCAATGAGG
ATGGCGAAATCGTCGATTCAGCATTTAAGACATTCGGGTGTGGTTCTGCC
ATCGCATCTTCTTCGTTAGCCACAGAATGGGTGAAGGGAAGAAATGTCGA
CGACGCTAAGAATATTAAAAACAGCGACATAGCAAAGGAGCTCAAGCTAC
CCCCGGTCAAACTGCACTGCTCGATGCTGGCGGAGGACGCTATCAAGGCT
GCCATTAAGGACCTTAAGGAGAAGCAAGAGAGAACGGATGGCGCACCATC
ATCCTAA

Coding sequence (CDS) from alignment at NODE_226_length_35554_cov_4.545132:22527..23083-

>Gcaud7590.t1 ID=Gcaud7590.t1|Name=Gcaud7590.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=477bp|location=Sequence derived from alignment at NODE_226_length_35554_cov_4.545132:22527..23083- (Gracilaria caudata M_176_S67 male)
ATGATCAGGACCACTGCAACCGCACTGAACAGGGGTCAAACTTCTGCTAT
CAGAGCACTGGCCAAGCGCAGTCGTTGTTACCACGACAAAGTAATCGACC
ACTACGAGAACCCGAGAAATGTGGGAAGCCTTGACAAAGAAGACAAGAAC
GTCGGCACCGGTCTGGTTGGAGCCCCCGCCTGCGGCGATGTCATGAAACT
TCAAATCCGAGTCAATGAGGATGGCGAAATCGTCGATTCAGCATTTAAGA
CATTCGGGTGTGGTTCTGCCATCGCATCTTCTTCGTTAGCCACAGAATGG
GTGAAGGGAAGAAATGTCGACGACGCTAAGAATATTAAAAACAGCGACAT
AGCAAAGGAGCTCAAGCTACCCCCGGTCAAACTGCACTGCTCGATGCTGG
CGGAGGACGCTATCAAGGCTGCCATTAAGGACCTTAAGGAGAAGCAAGAG
AGAACGGATGGCGCACCATCATCCTAA