Gcaud7585.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7585.t1
Unique Name	Gcaud7585.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	808

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_226_length_35554_cov_4.545132	contig	NODE_226_length_35554_cov_4.545132:4930..7352 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_04463T0
PFAMs	Peptidase_M16,Peptidase_M16_C
Max annot lvl	4751\|Fungi
Evalue	4.2e-86
EggNOG OGs	COG1026@1\|root,KOG0961@2759\|Eukaryota,38C6N@33154\|Opisthokonta,3NV61@4751\|Fungi
Description	zinc metalloprotease
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7585	Gcaud7585	Gracilaria caudata M_176_S67 male	gene	NODE_226_length_35554_cov_4.545132 4930..7352 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7585.t1.CDS1	Gcaud7585.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_226_length_35554_cov_4.545132 4930..7352 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7585.t1.exon1	Gcaud7585.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_226_length_35554_cov_4.545132 4930..7352 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7585.t1.start1	Gcaud7585.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_226_length_35554_cov_4.545132 7350..7352 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7585.t1	Gcaud7585.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_226_length_35554_cov_4.545132 4930..7352 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_226_length_35554_cov_4.545132:4930..7352-
coding sequence from alignment at NODE_226_length_35554_cov_4.545132:4930..7352-

mRNA sequence

>Gcaud7585.t1 ID=Gcaud7585.t1|Name=Gcaud7585.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=808bp
MSAIPFDGNIHDGFEAVPTFKSGASIPHGSPHGPLGANGILAFRHKKSQV
RIVMFAAPGPIVSGTIIVGTRPISNAGHPHTLEHIVFLGSHKYPVRGYLD
NLACRCIADGTNAWTDNDHTAYTCTTAGFDGFAELLPCFLDHVLRPKIND
ASFASEVYHIRSDGKEAGVVFCEMQAREHTEADITDRELRGLLLSGTPLS
LESGGLCEDIRHLSNEEIVRFHQDQYCGANVTIVVGGGQIVPNELLGCIK
AELDDVSSCAGFDPGEPQWRVPLNLQPLPPRTRKVVPFPCADTELGTIVF
GWRGAGAVHRLTNMGIGVLLHYFTHDVWSPMRQRFVETENRVASDISFSQ
EVFRDASVIEISFEGIKHLGRDDDDSEDEDGEEDEDDEEEEEEEEGNEMS
VEEDAQASVLTSGKVEEMFMGFLRDVLRCGKLPGGLECIHAAIKNERESY
LAALESECHGIVASYLVEEVVYGAGTGLTIGEEVRGALDMYDTLAHKNEE
FWLDLLDSVFVQAARVELIMVPDCTLAHKLSNEEKTALKNRIEQFGKHGL
EAVGKANEDRVASLKAASFDSARFPPVPSTANISRRPYSVSQTETDFYVT
QSVKLESDIVRCTIFLDTSDLPLSTRVFLPLVCELLLQSDIVMSDGSLMA
YTENARALDKVTISTSNSGVGVGFANGLADNCVIIHYAATPNCFEAATKL
ILLNLFHTRVSAERVGVVSQSLLANSTADMRDGSEALSSAAMLLPYAHET
MALDTMNTASETFDCTPNFVFNHSIANQCVYSRLCEQFAQTEASDDAQTA
TLRKIQDV

spliced messenger RNA

>Gcaud7585.t1 ID=Gcaud7585.t1|Name=Gcaud7585.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2423bp|location=Sequence derived from alignment at NODE_226_length_35554_cov_4.545132:4930..7352- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCATCCCGTTCGATGGCAATATCCACGATGGATTCGAAGCGGT
TCCGACGTTTAAAAGCGGCGCGAGCATTCCGCATGGTTCTCCGCATGGAC
CCCTTGGGGCAAATGGAATTCTTGCATTTCGGCACAAGAAGTCCCAAGTC
AGGATTGTCATGTTTGCAGCACCAGGACCGATTGTTTCAGGAACAATCAT
TGTGGGCACTCGTCCAATTTCGAATGCAGGTCATCCTCACACATTGGAGC
ACATTGTGTTCTTGGGGTCTCACAAGTACCCCGTTCGAGGTTATCTAGAC
AATCTCGCGTGCCGTTGCATCGCAGATGGAACAAATGCGTGGACAGACAA
TGATCATACAGCTTATACATGCACCACGGCTGGGTTTGATGGCTTTGCCG
AGCTGTTGCCTTGCTTTCTCGATCACGTGCTTCGACCGAAGATTAACGAT
GCTTCATTTGCTAGCGAGGTATATCACATCCGGTCTGACGGAAAAGAGGC
CGGTGTGGTATTCTGTGAGATGCAAGCTCGAGAGCACACGGAAGCGGATA
TCACGGACCGCGAGCTACGCGGTTTGCTGCTATCTGGAACGCCCCTGTCG
TTGGAGAGTGGAGGTTTGTGTGAAGACATACGGCATCTTTCTAATGAAGA
GATCGTTCGCTTCCACCAAGATCAGTATTGCGGAGCAAATGTCACAATTG
TTGTCGGAGGCGGTCAAATTGTGCCGAACGAGTTGCTTGGCTGCATCAAA
GCCGAACTGGATGATGTGTCTAGTTGTGCTGGATTCGATCCCGGTGAACC
GCAGTGGCGAGTGCCTCTCAATTTGCAACCGCTTCCGCCTCGAACTCGAA
AAGTGGTTCCATTCCCTTGCGCTGATACGGAACTTGGTACAATTGTTTTT
GGATGGCGCGGGGCAGGCGCCGTTCATCGCTTGACAAACATGGGCATCGG
GGTCCTGCTGCACTACTTTACGCACGACGTTTGGTCTCCGATGCGGCAAC
GATTCGTAGAAACGGAGAATCGGGTTGCCAGCGATATTTCTTTCTCGCAG
GAAGTGTTTCGTGATGCAAGTGTTATCGAGATATCGTTTGAGGGAATAAA
ACACTTGGGGCGCGATGATGACGATAGCGAAGACGAGGATGGTGAAGAAG
ACGAGGATGACGAAGAAGAAGAAGAAGAAGAAGAAGGCAATGAAATGAGT
GTTGAGGAGGATGCACAAGCATCTGTGTTGACATCCGGGAAAGTTGAGGA
GATGTTCATGGGGTTTTTACGAGATGTTTTGCGTTGCGGAAAACTACCCG
GTGGACTGGAGTGTATCCACGCAGCAATTAAGAATGAGAGAGAAAGCTAT
TTGGCAGCACTGGAATCTGAGTGTCACGGAATAGTGGCGAGCTATCTGGT
GGAAGAGGTTGTGTATGGCGCAGGTACCGGTCTCACAATTGGCGAAGAAG
TGCGAGGTGCGCTAGACATGTACGACACTCTTGCTCACAAGAACGAAGAG
TTTTGGCTGGATTTGCTTGACTCTGTGTTTGTGCAAGCCGCTCGCGTGGA
ACTGATCATGGTTCCGGATTGCACTCTTGCGCACAAACTTTCAAATGAGG
AGAAAACAGCGCTTAAAAACCGCATCGAACAGTTTGGAAAGCACGGACTT
GAAGCGGTGGGCAAGGCAAATGAAGATCGAGTTGCTTCTCTGAAGGCGGC
TTCTTTTGACAGTGCGCGCTTTCCACCAGTTCCGTCCACTGCAAATATAT
CGCGACGGCCGTACTCCGTTTCGCAGACAGAAACGGACTTTTACGTGACG
CAATCGGTGAAGTTGGAAAGCGACATTGTGCGATGCACAATCTTTCTCGA
TACAAGCGATCTTCCTTTATCAACAAGAGTGTTTCTTCCTCTTGTTTGCG
AGCTTTTGCTCCAAAGCGATATTGTGATGAGTGACGGCTCCCTCATGGCG
TACACAGAGAATGCAAGAGCACTGGACAAGGTGACGATATCAACGTCGAA
TTCTGGGGTAGGCGTGGGCTTTGCCAACGGGTTGGCGGACAATTGTGTGA
TCATTCACTACGCAGCCACGCCGAATTGTTTCGAAGCGGCCACCAAACTG
ATTCTGCTGAACCTATTTCACACGCGGGTGAGCGCGGAAAGAGTGGGTGT
GGTTTCGCAGAGCTTGTTGGCAAACTCGACGGCGGACATGCGAGACGGGT
CGGAGGCGTTGTCGTCCGCGGCGATGTTGCTTCCGTACGCGCATGAAACA
ATGGCGCTCGACACGATGAACACTGCGAGTGAGACGTTCGACTGCACTCC
CAACTTTGTGTTCAACCACAGTATTGCAAATCAGTGCGTGTACTCGAGGT
TGTGCGAGCAGTTTGCACAAACGGAAGCAAGCGACGATGCTCAGACCGCC
ACCTTGCGCAAGATCCAAGACGT

protein sequence of Gcaud7585.t1

>Gcaud7585.t1 ID=Gcaud7585.t1|Name=Gcaud7585.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=808bp
MSAIPFDGNIHDGFEAVPTFKSGASIPHGSPHGPLGANGILAFRHKKSQV
RIVMFAAPGPIVSGTIIVGTRPISNAGHPHTLEHIVFLGSHKYPVRGYLD
NLACRCIADGTNAWTDNDHTAYTCTTAGFDGFAELLPCFLDHVLRPKIND
ASFASEVYHIRSDGKEAGVVFCEMQAREHTEADITDRELRGLLLSGTPLS
LESGGLCEDIRHLSNEEIVRFHQDQYCGANVTIVVGGGQIVPNELLGCIK
AELDDVSSCAGFDPGEPQWRVPLNLQPLPPRTRKVVPFPCADTELGTIVF
GWRGAGAVHRLTNMGIGVLLHYFTHDVWSPMRQRFVETENRVASDISFSQ
EVFRDASVIEISFEGIKHLGRDDDDSEDEDGEEDEDDEEEEEEEEGNEMS
VEEDAQASVLTSGKVEEMFMGFLRDVLRCGKLPGGLECIHAAIKNERESY
LAALESECHGIVASYLVEEVVYGAGTGLTIGEEVRGALDMYDTLAHKNEE
FWLDLLDSVFVQAARVELIMVPDCTLAHKLSNEEKTALKNRIEQFGKHGL
EAVGKANEDRVASLKAASFDSARFPPVPSTANISRRPYSVSQTETDFYVT
QSVKLESDIVRCTIFLDTSDLPLSTRVFLPLVCELLLQSDIVMSDGSLMA
YTENARALDKVTISTSNSGVGVGFANGLADNCVIIHYAATPNCFEAATKL
ILLNLFHTRVSAERVGVVSQSLLANSTADMRDGSEALSSAAMLLPYAHET
MALDTMNTASETFDCTPNFVFNHSIANQCVYSRLCEQFAQTEASDDAQTA
TLRKIQDV

mRNA from alignment at NODE_226_length_35554_cov_4.545132:4930..7352-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7585.t1 ID=Gcaud7585.t1|Name=Gcaud7585.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2423bp|location=Sequence derived from alignment at NODE_226_length_35554_cov_4.545132:4930..7352- (Gracilaria caudata M_176_S67 male)
ATGAGCGCCATCCCGTTCGATGGCAATATCCACGATGGATTCGAAGCGGT
TCCGACGTTTAAAAGCGGCGCGAGCATTCCGCATGGTTCTCCGCATGGAC
CCCTTGGGGCAAATGGAATTCTTGCATTTCGGCACAAGAAGTCCCAAGTC
AGGATTGTCATGTTTGCAGCACCAGGACCGATTGTTTCAGGAACAATCAT
TGTGGGCACTCGTCCAATTTCGAATGCAGGTCATCCTCACACATTGGAGC
ACATTGTGTTCTTGGGGTCTCACAAGTACCCCGTTCGAGGTTATCTAGAC
AATCTCGCGTGCCGTTGCATCGCAGATGGAACAAATGCGTGGACAGACAA
TGATCATACAGCTTATACATGCACCACGGCTGGGTTTGATGGCTTTGCCG
AGCTGTTGCCTTGCTTTCTCGATCACGTGCTTCGACCGAAGATTAACGAT
GCTTCATTTGCTAGCGAGGTATATCACATCCGGTCTGACGGAAAAGAGGC
CGGTGTGGTATTCTGTGAGATGCAAGCTCGAGAGCACACGGAAGCGGATA
TCACGGACCGCGAGCTACGCGGTTTGCTGCTATCTGGAACGCCCCTGTCG
TTGGAGAGTGGAGGTTTGTGTGAAGACATACGGCATCTTTCTAATGAAGA
GATCGTTCGCTTCCACCAAGATCAGTATTGCGGAGCAAATGTCACAATTG
TTGTCGGAGGCGGTCAAATTGTGCCGAACGAGTTGCTTGGCTGCATCAAA
GCCGAACTGGATGATGTGTCTAGTTGTGCTGGATTCGATCCCGGTGAACC
GCAGTGGCGAGTGCCTCTCAATTTGCAACCGCTTCCGCCTCGAACTCGAA
AAGTGGTTCCATTCCCTTGCGCTGATACGGAACTTGGTACAATTGTTTTT
GGATGGCGCGGGGCAGGCGCCGTTCATCGCTTGACAAACATGGGCATCGG
GGTCCTGCTGCACTACTTTACGCACGACGTTTGGTCTCCGATGCGGCAAC
GATTCGTAGAAACGGAGAATCGGGTTGCCAGCGATATTTCTTTCTCGCAG
GAAGTGTTTCGTGATGCAAGTGTTATCGAGATATCGTTTGAGGGAATAAA
ACACTTGGGGCGCGATGATGACGATAGCGAAGACGAGGATGGTGAAGAAG
ACGAGGATGACGAAGAAGAAGAAGAAGAAGAAGAAGGCAATGAAATGAGT
GTTGAGGAGGATGCACAAGCATCTGTGTTGACATCCGGGAAAGTTGAGGA
GATGTTCATGGGGTTTTTACGAGATGTTTTGCGTTGCGGAAAACTACCCG
GTGGACTGGAGTGTATCCACGCAGCAATTAAGAATGAGAGAGAAAGCTAT
TTGGCAGCACTGGAATCTGAGTGTCACGGAATAGTGGCGAGCTATCTGGT
GGAAGAGGTTGTGTATGGCGCAGGTACCGGTCTCACAATTGGCGAAGAAG
TGCGAGGTGCGCTAGACATGTACGACACTCTTGCTCACAAGAACGAAGAG
TTTTGGCTGGATTTGCTTGACTCTGTGTTTGTGCAAGCCGCTCGCGTGGA
ACTGATCATGGTTCCGGATTGCACTCTTGCGCACAAACTTTCAAATGAGG
AGAAAACAGCGCTTAAAAACCGCATCGAACAGTTTGGAAAGCACGGACTT
GAAGCGGTGGGCAAGGCAAATGAAGATCGAGTTGCTTCTCTGAAGGCGGC
TTCTTTTGACAGTGCGCGCTTTCCACCAGTTCCGTCCACTGCAAATATAT
CGCGACGGCCGTACTCCGTTTCGCAGACAGAAACGGACTTTTACGTGACG
CAATCGGTGAAGTTGGAAAGCGACATTGTGCGATGCACAATCTTTCTCGA
TACAAGCGATCTTCCTTTATCAACAAGAGTGTTTCTTCCTCTTGTTTGCG
AGCTTTTGCTCCAAAGCGATATTGTGATGAGTGACGGCTCCCTCATGGCG
TACACAGAGAATGCAAGAGCACTGGACAAGGTGACGATATCAACGTCGAA
TTCTGGGGTAGGCGTGGGCTTTGCCAACGGGTTGGCGGACAATTGTGTGA
TCATTCACTACGCAGCCACGCCGAATTGTTTCGAAGCGGCCACCAAACTG
ATTCTGCTGAACCTATTTCACACGCGGGTGAGCGCGGAAAGAGTGGGTGT
GGTTTCGCAGAGCTTGTTGGCAAACTCGACGGCGGACATGCGAGACGGGT
CGGAGGCGTTGTCGTCCGCGGCGATGTTGCTTCCGTACGCGCATGAAACA
ATGGCGCTCGACACGATGAACACTGCGAGTGAGACGTTCGACTGCACTCC
CAACTTTGTGTTCAACCACAGTATTGCAAATCAGTGCGTGTACTCGAGGT
TGTGCGAGCAGTTTGCACAAACGGAAGCAAGCGACGATGCTCAGACCGCC
ACCTTGCGCAAGATCCAAGACGT

Coding sequence (CDS) from alignment at NODE_226_length_35554_cov_4.545132:4930..7352-

>Gcaud7585.t1 ID=Gcaud7585.t1|Name=Gcaud7585.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2423bp|location=Sequence derived from alignment at NODE_226_length_35554_cov_4.545132:4930..7352- (Gracilaria caudata M_176_S67 male)
ATGAGCGCCATCCCGTTCGATGGCAATATCCACGATGGATTCGAAGCGGT
TCCGACGTTTAAAAGCGGCGCGAGCATTCCGCATGGTTCTCCGCATGGAC
CCCTTGGGGCAAATGGAATTCTTGCATTTCGGCACAAGAAGTCCCAAGTC
AGGATTGTCATGTTTGCAGCACCAGGACCGATTGTTTCAGGAACAATCAT
TGTGGGCACTCGTCCAATTTCGAATGCAGGTCATCCTCACACATTGGAGC
ACATTGTGTTCTTGGGGTCTCACAAGTACCCCGTTCGAGGTTATCTAGAC
AATCTCGCGTGCCGTTGCATCGCAGATGGAACAAATGCGTGGACAGACAA
TGATCATACAGCTTATACATGCACCACGGCTGGGTTTGATGGCTTTGCCG
AGCTGTTGCCTTGCTTTCTCGATCACGTGCTTCGACCGAAGATTAACGAT
GCTTCATTTGCTAGCGAGGTATATCACATCCGGTCTGACGGAAAAGAGGC
CGGTGTGGTATTCTGTGAGATGCAAGCTCGAGAGCACACGGAAGCGGATA
TCACGGACCGCGAGCTACGCGGTTTGCTGCTATCTGGAACGCCCCTGTCG
TTGGAGAGTGGAGGTTTGTGTGAAGACATACGGCATCTTTCTAATGAAGA
GATCGTTCGCTTCCACCAAGATCAGTATTGCGGAGCAAATGTCACAATTG
TTGTCGGAGGCGGTCAAATTGTGCCGAACGAGTTGCTTGGCTGCATCAAA
GCCGAACTGGATGATGTGTCTAGTTGTGCTGGATTCGATCCCGGTGAACC
GCAGTGGCGAGTGCCTCTCAATTTGCAACCGCTTCCGCCTCGAACTCGAA
AAGTGGTTCCATTCCCTTGCGCTGATACGGAACTTGGTACAATTGTTTTT
GGATGGCGCGGGGCAGGCGCCGTTCATCGCTTGACAAACATGGGCATCGG
GGTCCTGCTGCACTACTTTACGCACGACGTTTGGTCTCCGATGCGGCAAC
GATTCGTAGAAACGGAGAATCGGGTTGCCAGCGATATTTCTTTCTCGCAG
GAAGTGTTTCGTGATGCAAGTGTTATCGAGATATCGTTTGAGGGAATAAA
ACACTTGGGGCGCGATGATGACGATAGCGAAGACGAGGATGGTGAAGAAG
ACGAGGATGACGAAGAAGAAGAAGAAGAAGAAGAAGGCAATGAAATGAGT
GTTGAGGAGGATGCACAAGCATCTGTGTTGACATCCGGGAAAGTTGAGGA
GATGTTCATGGGGTTTTTACGAGATGTTTTGCGTTGCGGAAAACTACCCG
GTGGACTGGAGTGTATCCACGCAGCAATTAAGAATGAGAGAGAAAGCTAT
TTGGCAGCACTGGAATCTGAGTGTCACGGAATAGTGGCGAGCTATCTGGT
GGAAGAGGTTGTGTATGGCGCAGGTACCGGTCTCACAATTGGCGAAGAAG
TGCGAGGTGCGCTAGACATGTACGACACTCTTGCTCACAAGAACGAAGAG
TTTTGGCTGGATTTGCTTGACTCTGTGTTTGTGCAAGCCGCTCGCGTGGA
ACTGATCATGGTTCCGGATTGCACTCTTGCGCACAAACTTTCAAATGAGG
AGAAAACAGCGCTTAAAAACCGCATCGAACAGTTTGGAAAGCACGGACTT
GAAGCGGTGGGCAAGGCAAATGAAGATCGAGTTGCTTCTCTGAAGGCGGC
TTCTTTTGACAGTGCGCGCTTTCCACCAGTTCCGTCCACTGCAAATATAT
CGCGACGGCCGTACTCCGTTTCGCAGACAGAAACGGACTTTTACGTGACG
CAATCGGTGAAGTTGGAAAGCGACATTGTGCGATGCACAATCTTTCTCGA
TACAAGCGATCTTCCTTTATCAACAAGAGTGTTTCTTCCTCTTGTTTGCG
AGCTTTTGCTCCAAAGCGATATTGTGATGAGTGACGGCTCCCTCATGGCG
TACACAGAGAATGCAAGAGCACTGGACAAGGTGACGATATCAACGTCGAA
TTCTGGGGTAGGCGTGGGCTTTGCCAACGGGTTGGCGGACAATTGTGTGA
TCATTCACTACGCAGCCACGCCGAATTGTTTCGAAGCGGCCACCAAACTG
ATTCTGCTGAACCTATTTCACACGCGGGTGAGCGCGGAAAGAGTGGGTGT
GGTTTCGCAGAGCTTGTTGGCAAACTCGACGGCGGACATGCGAGACGGGT
CGGAGGCGTTGTCGTCCGCGGCGATGTTGCTTCCGTACGCGCATGAAACA
ATGGCGCTCGACACGATGAACACTGCGAGTGAGACGTTCGACTGCACTCC
CAACTTTGTGTTCAACCACAGTATTGCAAATCAGTGCGTGTACTCGAGGT
TGTGCGAGCAGTTTGCACAAACGGAAGCAAGCGACGATGCTCAGACCGCC
ACCTTGCGCAAGATCCAAGACGT