Gcaud7575.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7575.t1
Unique NameGcaud7575.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1149_length_13302_cov_3.963742contigNODE_1149_length_13302_cov_3.963742:9129..9686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704880.1
Preferred nameHGPRT
PFAMsPribosyltran
Max annot lvl2759|Eukaryota
KEGG rclassRC00063,RC00122
KEGG koko:K00760
KEGG ReactionR00190,R01132,R01229,R02142,R08237,R08238,R08245
KEGG Pathwayko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110
Evalue4.64e-49
EggNOG OGsCOG0634@1|root,KOG3367@2759|Eukaryota
EC2.4.2.8
Descriptionguanine phosphoribosyltransferase activity
COG categoryF
BiGG ReactioniRC1080.CRv4_Au5_s17_g7207_t1
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7575Gcaud7575Gracilaria caudata M_176_S67 malegeneNODE_1149_length_13302_cov_3.963742 9129..9686 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7575.t1.start1Gcaud7575.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1149_length_13302_cov_3.963742 9129..9131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7575.t1.CDS1Gcaud7575.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1149_length_13302_cov_3.963742 9129..9686 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7575.t1.exon1Gcaud7575.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1149_length_13302_cov_3.963742 9129..9686 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7575.t1.stop1Gcaud7575.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1149_length_13302_cov_3.963742 9684..9686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7575.t1Gcaud7575.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1149_length_13302_cov_3.963742 9129..9686 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7575.t1 ID=Gcaud7575.t1|Name=Gcaud7575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=186bp
MESGGPVPPEWVGSISEVLIGSADIAKRIAHLGKTISSKYEGLNPLLVVV
LKGSYMFASDLSRSMNVPHELEFIRASSYSGTESSGNVHINGMHSTKLQG
RHVIVIEDIVDTGLTLSRLYAHFEGAGAATIRTCSFLEKETVRRRAGIPT
IDFVAFHIPDKFVVGYGLDYDQQYRHLPFVGVYKQ*
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spliced messenger RNA

>Gcaud7575.t1 ID=Gcaud7575.t1|Name=Gcaud7575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=558bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:9129..9686+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGCGGAGGCCCTGTGCCCCCCGAGTGGGTGGGCTCCATCTCCGA
GGTGCTAATCGGCTCAGCAGACATTGCAAAGAGAATCGCGCATCTCGGCA
AGACGATATCCTCCAAGTACGAAGGGCTGAATCCACTTTTAGTGGTGGTT
CTAAAAGGCTCGTACATGTTCGCCTCAGACCTGTCTCGTTCCATGAACGT
TCCGCACGAGCTCGAATTCATCCGCGCAAGCAGCTACAGCGGCACAGAAA
GCAGTGGCAACGTACACATAAACGGCATGCACAGCACGAAGCTACAGGGC
AGACACGTGATTGTGATTGAGGATATTGTGGACACGGGACTCACTCTGAG
TCGGTTGTACGCGCATTTTGAGGGCGCCGGTGCGGCTACCATCAGGACGT
GCTCGTTTTTGGAGAAGGAGACGGTGAGACGAAGGGCGGGCATTCCGACG
ATTGATTTTGTGGCGTTTCACATCCCGGACAAGTTTGTGGTTGGATATGG
TCTAGACTATGATCAGCAATATCGCCATTTACCTTTTGTGGGGGTGTACA
AACAGTAA
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protein sequence of Gcaud7575.t1

>Gcaud7575.t1 ID=Gcaud7575.t1|Name=Gcaud7575.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=186bp
MESGGPVPPEWVGSISEVLIGSADIAKRIAHLGKTISSKYEGLNPLLVVV
LKGSYMFASDLSRSMNVPHELEFIRASSYSGTESSGNVHINGMHSTKLQG
RHVIVIEDIVDTGLTLSRLYAHFEGAGAATIRTCSFLEKETVRRRAGIPT
IDFVAFHIPDKFVVGYGLDYDQQYRHLPFVGVYKQ*
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mRNA from alignment at NODE_1149_length_13302_cov_3.963742:9129..9686+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7575.t1 ID=Gcaud7575.t1|Name=Gcaud7575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=558bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:9129..9686+ (Gracilaria caudata M_176_S67 male)
ATGGAAAGCGGAGGCCCTGTGCCCCCCGAGTGGGTGGGCTCCATCTCCGA
GGTGCTAATCGGCTCAGCAGACATTGCAAAGAGAATCGCGCATCTCGGCA
AGACGATATCCTCCAAGTACGAAGGGCTGAATCCACTTTTAGTGGTGGTT
CTAAAAGGCTCGTACATGTTCGCCTCAGACCTGTCTCGTTCCATGAACGT
TCCGCACGAGCTCGAATTCATCCGCGCAAGCAGCTACAGCGGCACAGAAA
GCAGTGGCAACGTACACATAAACGGCATGCACAGCACGAAGCTACAGGGC
AGACACGTGATTGTGATTGAGGATATTGTGGACACGGGACTCACTCTGAG
TCGGTTGTACGCGCATTTTGAGGGCGCCGGTGCGGCTACCATCAGGACGT
GCTCGTTTTTGGAGAAGGAGACGGTGAGACGAAGGGCGGGCATTCCGACG
ATTGATTTTGTGGCGTTTCACATCCCGGACAAGTTTGTGGTTGGATATGG
TCTAGACTATGATCAGCAATATCGCCATTTACCTTTTGTGGGGGTGTACA
AACAGTAA
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Coding sequence (CDS) from alignment at NODE_1149_length_13302_cov_3.963742:9129..9686+

>Gcaud7575.t1 ID=Gcaud7575.t1|Name=Gcaud7575.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=558bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:9129..9686+ (Gracilaria caudata M_176_S67 male)
ATGGAAAGCGGAGGCCCTGTGCCCCCCGAGTGGGTGGGCTCCATCTCCGA
GGTGCTAATCGGCTCAGCAGACATTGCAAAGAGAATCGCGCATCTCGGCA
AGACGATATCCTCCAAGTACGAAGGGCTGAATCCACTTTTAGTGGTGGTT
CTAAAAGGCTCGTACATGTTCGCCTCAGACCTGTCTCGTTCCATGAACGT
TCCGCACGAGCTCGAATTCATCCGCGCAAGCAGCTACAGCGGCACAGAAA
GCAGTGGCAACGTACACATAAACGGCATGCACAGCACGAAGCTACAGGGC
AGACACGTGATTGTGATTGAGGATATTGTGGACACGGGACTCACTCTGAG
TCGGTTGTACGCGCATTTTGAGGGCGCCGGTGCGGCTACCATCAGGACGT
GCTCGTTTTTGGAGAAGGAGACGGTGAGACGAAGGGCGGGCATTCCGACG
ATTGATTTTGTGGCGTTTCACATCCCGGACAAGTTTGTGGTTGGATATGG
TCTAGACTATGATCAGCAATATCGCCATTTACCTTTTGTGGGGGTGTACA
AACAGTAA
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