Gcaud7571.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7571.t1
Unique Name	Gcaud7571.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	360

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1149_length_13302_cov_3.963742	contig	NODE_1149_length_13302_cov_3.963742:2657..3736 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	483219.LILAB_01105
PFAMs	TerC
Max annot lvl	28221\|Deltaproteobacteria
KEGG ko	ko:K05794
Evalue	2.06e-67
EggNOG OGs	COG0861@1\|root,COG0861@2\|Bacteria,1MUNR@1224\|Proteobacteria,42PJP@68525\|delta/epsilon subdivisions,2WJI0@28221\|Deltaproteobacteria,2YXVU@29\|Myxococcales
Description	Membrane protein, TerC
COG category	P
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7571	Gcaud7571	Gracilaria caudata M_176_S67 male	gene	NODE_1149_length_13302_cov_3.963742 2657..3736 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7571.t1.stop1	Gcaud7571.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1149_length_13302_cov_3.963742 2657..2659 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7571.t1.CDS1	Gcaud7571.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1149_length_13302_cov_3.963742 2657..3736 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7571.t1.exon1	Gcaud7571.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1149_length_13302_cov_3.963742 2657..3736 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7571.t1.start1	Gcaud7571.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1149_length_13302_cov_3.963742 3734..3736 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7571.t1	Gcaud7571.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1149_length_13302_cov_3.963742 2657..3736 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1149_length_13302_cov_3.963742:2657..3736-
coding sequence from alignment at NODE_1149_length_13302_cov_3.963742:2657..3736-

mRNA sequence

>Gcaud7571.t1 ID=Gcaud7571.t1|Name=Gcaud7571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=360bp
MASRALATGVAASIARPVAVSHAALPRCNSHGRMLSRLPLPEGGAPNASR
GAVSASRSDPSHIKSKGKSLSALSLLPLPTPHVLHTLLWLLCAALVAVTV
AFVRGWHSALEFTTAYIVEYSLSVDNLFVFLLIFRYFKVPSDAQQTVLRY
GILGAMVLRGIMILAGKVLIDSFQWIAIAFALLLIYSAVKLLLDDDDDAD
LEHNRIIAFSRSVLPVAEYYAGDKFFVQDGARTIVTPLMVVLVAIELSDV
VFALDSVPAVLGISNDTFVVYTSNILAIMGLRSLFFVVSNTIGTLRFLKQ
SLSIVLAFIGVKMIAGCLGYDFGVAVSLTVVTVTLAVGIILSLLLPERQD
VPLSPSNSV*

spliced messenger RNA

>Gcaud7571.t1 ID=Gcaud7571.t1|Name=Gcaud7571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:2657..3736- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGCGAGCGCTCGCGACCGGAGTCGCCGCGTCCATCGCCCGTCC
CGTCGCCGTCAGCCACGCCGCGTTGCCGCGCTGCAATTCACATGGCCGCA
TGCTATCGCGTCTTCCCCTCCCCGAAGGTGGCGCGCCAAATGCGTCGCGC
GGCGCAGTGAGCGCGTCGCGTTCCGACCCGTCGCACATCAAGAGCAAGGG
CAAATCGTTGTCGGCGTTGTCGCTGTTGCCTTTGCCCACTCCGCACGTGC
TGCACACGCTGTTGTGGCTGCTTTGCGCCGCGCTCGTGGCTGTCACCGTT
GCGTTTGTGCGAGGTTGGCACAGCGCGTTGGAGTTTACCACCGCGTATAT
AGTCGAGTACTCGCTGTCTGTGGATAACTTGTTCGTGTTTCTTCTCATTT
TTCGTTACTTCAAGGTGCCCAGCGATGCGCAGCAGACGGTGTTGCGCTAT
GGCATTCTGGGTGCCATGGTGCTTCGCGGCATTATGATCCTGGCCGGTAA
GGTGCTTATCGACAGCTTTCAATGGATTGCCATTGCCTTCGCACTGCTGC
TCATCTACTCGGCCGTGAAGCTCCTCTTAGATGATGACGACGACGCCGAC
TTGGAGCACAATCGAATCATTGCCTTCAGCCGAAGCGTTCTTCCCGTTGC
TGAGTATTACGCTGGCGACAAATTTTTTGTGCAAGATGGCGCTCGCACAA
TTGTCACGCCGCTCATGGTCGTTTTGGTTGCCATCGAACTGTCCGACGTT
GTGTTTGCATTGGATTCTGTGCCAGCAGTTCTGGGCATATCGAACGACAC
TTTTGTCGTCTACACCAGTAACATCCTCGCCATTATGGGCTTACGATCTT
TGTTTTTTGTCGTGTCCAATACCATTGGCACTTTGCGGTTTCTCAAACAA
TCTCTGTCCATCGTGCTCGCTTTTATCGGCGTCAAGATGATCGCGGGCTG
TTTAGGTTATGACTTTGGCGTGGCCGTTTCACTGACCGTTGTAACAGTCA
CGCTGGCCGTGGGTATTATCTTGTCTTTACTTTTGCCAGAGCGCCAAGAT
GTTCCTCTCTCACCATCAAATAGCGTGTAA

protein sequence of Gcaud7571.t1

>Gcaud7571.t1 ID=Gcaud7571.t1|Name=Gcaud7571.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=360bp
MASRALATGVAASIARPVAVSHAALPRCNSHGRMLSRLPLPEGGAPNASR
GAVSASRSDPSHIKSKGKSLSALSLLPLPTPHVLHTLLWLLCAALVAVTV
AFVRGWHSALEFTTAYIVEYSLSVDNLFVFLLIFRYFKVPSDAQQTVLRY
GILGAMVLRGIMILAGKVLIDSFQWIAIAFALLLIYSAVKLLLDDDDDAD
LEHNRIIAFSRSVLPVAEYYAGDKFFVQDGARTIVTPLMVVLVAIELSDV
VFALDSVPAVLGISNDTFVVYTSNILAIMGLRSLFFVVSNTIGTLRFLKQ
SLSIVLAFIGVKMIAGCLGYDFGVAVSLTVVTVTLAVGIILSLLLPERQD
VPLSPSNSV*

mRNA from alignment at NODE_1149_length_13302_cov_3.963742:2657..3736-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7571.t1 ID=Gcaud7571.t1|Name=Gcaud7571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:2657..3736- (Gracilaria caudata M_176_S67 male)
ATGGCGTCGCGAGCGCTCGCGACCGGAGTCGCCGCGTCCATCGCCCGTCC
CGTCGCCGTCAGCCACGCCGCGTTGCCGCGCTGCAATTCACATGGCCGCA
TGCTATCGCGTCTTCCCCTCCCCGAAGGTGGCGCGCCAAATGCGTCGCGC
GGCGCAGTGAGCGCGTCGCGTTCCGACCCGTCGCACATCAAGAGCAAGGG
CAAATCGTTGTCGGCGTTGTCGCTGTTGCCTTTGCCCACTCCGCACGTGC
TGCACACGCTGTTGTGGCTGCTTTGCGCCGCGCTCGTGGCTGTCACCGTT
GCGTTTGTGCGAGGTTGGCACAGCGCGTTGGAGTTTACCACCGCGTATAT
AGTCGAGTACTCGCTGTCTGTGGATAACTTGTTCGTGTTTCTTCTCATTT
TTCGTTACTTCAAGGTGCCCAGCGATGCGCAGCAGACGGTGTTGCGCTAT
GGCATTCTGGGTGCCATGGTGCTTCGCGGCATTATGATCCTGGCCGGTAA
GGTGCTTATCGACAGCTTTCAATGGATTGCCATTGCCTTCGCACTGCTGC
TCATCTACTCGGCCGTGAAGCTCCTCTTAGATGATGACGACGACGCCGAC
TTGGAGCACAATCGAATCATTGCCTTCAGCCGAAGCGTTCTTCCCGTTGC
TGAGTATTACGCTGGCGACAAATTTTTTGTGCAAGATGGCGCTCGCACAA
TTGTCACGCCGCTCATGGTCGTTTTGGTTGCCATCGAACTGTCCGACGTT
GTGTTTGCATTGGATTCTGTGCCAGCAGTTCTGGGCATATCGAACGACAC
TTTTGTCGTCTACACCAGTAACATCCTCGCCATTATGGGCTTACGATCTT
TGTTTTTTGTCGTGTCCAATACCATTGGCACTTTGCGGTTTCTCAAACAA
TCTCTGTCCATCGTGCTCGCTTTTATCGGCGTCAAGATGATCGCGGGCTG
TTTAGGTTATGACTTTGGCGTGGCCGTTTCACTGACCGTTGTAACAGTCA
CGCTGGCCGTGGGTATTATCTTGTCTTTACTTTTGCCAGAGCGCCAAGAT
GTTCCTCTCTCACCATCAAATAGCGTGTAA

Coding sequence (CDS) from alignment at NODE_1149_length_13302_cov_3.963742:2657..3736-

>Gcaud7571.t1 ID=Gcaud7571.t1|Name=Gcaud7571.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1080bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:2657..3736- (Gracilaria caudata M_176_S67 male)
ATGGCGTCGCGAGCGCTCGCGACCGGAGTCGCCGCGTCCATCGCCCGTCC
CGTCGCCGTCAGCCACGCCGCGTTGCCGCGCTGCAATTCACATGGCCGCA
TGCTATCGCGTCTTCCCCTCCCCGAAGGTGGCGCGCCAAATGCGTCGCGC
GGCGCAGTGAGCGCGTCGCGTTCCGACCCGTCGCACATCAAGAGCAAGGG
CAAATCGTTGTCGGCGTTGTCGCTGTTGCCTTTGCCCACTCCGCACGTGC
TGCACACGCTGTTGTGGCTGCTTTGCGCCGCGCTCGTGGCTGTCACCGTT
GCGTTTGTGCGAGGTTGGCACAGCGCGTTGGAGTTTACCACCGCGTATAT
AGTCGAGTACTCGCTGTCTGTGGATAACTTGTTCGTGTTTCTTCTCATTT
TTCGTTACTTCAAGGTGCCCAGCGATGCGCAGCAGACGGTGTTGCGCTAT
GGCATTCTGGGTGCCATGGTGCTTCGCGGCATTATGATCCTGGCCGGTAA
GGTGCTTATCGACAGCTTTCAATGGATTGCCATTGCCTTCGCACTGCTGC
TCATCTACTCGGCCGTGAAGCTCCTCTTAGATGATGACGACGACGCCGAC
TTGGAGCACAATCGAATCATTGCCTTCAGCCGAAGCGTTCTTCCCGTTGC
TGAGTATTACGCTGGCGACAAATTTTTTGTGCAAGATGGCGCTCGCACAA
TTGTCACGCCGCTCATGGTCGTTTTGGTTGCCATCGAACTGTCCGACGTT
GTGTTTGCATTGGATTCTGTGCCAGCAGTTCTGGGCATATCGAACGACAC
TTTTGTCGTCTACACCAGTAACATCCTCGCCATTATGGGCTTACGATCTT
TGTTTTTTGTCGTGTCCAATACCATTGGCACTTTGCGGTTTCTCAAACAA
TCTCTGTCCATCGTGCTCGCTTTTATCGGCGTCAAGATGATCGCGGGCTG
TTTAGGTTATGACTTTGGCGTGGCCGTTTCACTGACCGTTGTAACAGTCA
CGCTGGCCGTGGGTATTATCTTGTCTTTACTTTTGCCAGAGCGCCAAGAT
GTTCCTCTCTCACCATCAAATAGCGTGTAA