Gcaud7548.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7548.t1
Unique NameGcaud7548.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length130
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_232_length_35106_cov_4.900328contigNODE_232_length_35106_cov_4.900328:10421..10810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog321327.CYA_2834
Preferred namehliC
PFAMsChloroa_b-bind
Max annot lvl1117|Cyanobacteria
Evalue2.59e-09
EggNOG OGs2EACI@1|root,334GG@2|Bacteria,1G907@1117|Cyanobacteria,1H1H0@1129|Synechococcus
DescriptionChlorophyll A-B binding protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7548Gcaud7548Gracilaria caudata M_176_S67 malegeneNODE_232_length_35106_cov_4.900328 10421..10810 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7548.t1.start1Gcaud7548.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_232_length_35106_cov_4.900328 10421..10423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7548.t1.CDS1Gcaud7548.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_232_length_35106_cov_4.900328 10421..10810 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7548.t1.exon1Gcaud7548.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_232_length_35106_cov_4.900328 10421..10810 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7548.t1.stop1Gcaud7548.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_232_length_35106_cov_4.900328 10808..10810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7548.t1Gcaud7548.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_232_length_35106_cov_4.900328 10421..10810 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7548.t1 ID=Gcaud7548.t1|Name=Gcaud7548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=130bp
MNAHTAFASSFTPALTTTTNSFISPVTIRAPKSLIAAPRMILRTKEKQTV
VQSPYRTLEANRAAKLNSAYSGPQGFTPYAEKVNGRLAQLGFVIGLLTEI
ITGKGIDQQILIMFSPLTHVAAVLAGIAQ*
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spliced messenger RNA

>Gcaud7548.t1 ID=Gcaud7548.t1|Name=Gcaud7548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=390bp|location=Sequence derived from alignment at NODE_232_length_35106_cov_4.900328:10421..10810+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCGCACACCGCTTTTGCTTCCTCCTTCACCCCAGCTCTCACCAC
CACCACAAACTCCTTCATCTCTCCCGTTACCATCCGCGCCCCGAAATCAC
TCATCGCCGCCCCCCGCATGATCCTGCGGACCAAGGAAAAGCAGACGGTA
GTGCAGTCACCGTACCGGACTCTGGAGGCCAACCGCGCCGCAAAGCTCAA
CAGCGCGTACAGCGGGCCCCAGGGTTTCACACCGTACGCCGAGAAGGTCA
ACGGTCGATTGGCGCAGCTTGGCTTTGTGATCGGTCTGTTGACAGAGATC
ATCACTGGAAAGGGCATCGACCAACAGATTCTGATCATGTTTTCGCCGCT
CACGCACGTTGCCGCGGTTTTGGCAGGCATTGCGCAATGA
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protein sequence of Gcaud7548.t1

>Gcaud7548.t1 ID=Gcaud7548.t1|Name=Gcaud7548.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=130bp
MNAHTAFASSFTPALTTTTNSFISPVTIRAPKSLIAAPRMILRTKEKQTV
VQSPYRTLEANRAAKLNSAYSGPQGFTPYAEKVNGRLAQLGFVIGLLTEI
ITGKGIDQQILIMFSPLTHVAAVLAGIAQ*
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mRNA from alignment at NODE_232_length_35106_cov_4.900328:10421..10810+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7548.t1 ID=Gcaud7548.t1|Name=Gcaud7548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=390bp|location=Sequence derived from alignment at NODE_232_length_35106_cov_4.900328:10421..10810+ (Gracilaria caudata M_176_S67 male)
ATGAACGCGCACACCGCTTTTGCTTCCTCCTTCACCCCAGCTCTCACCAC
CACCACAAACTCCTTCATCTCTCCCGTTACCATCCGCGCCCCGAAATCAC
TCATCGCCGCCCCCCGCATGATCCTGCGGACCAAGGAAAAGCAGACGGTA
GTGCAGTCACCGTACCGGACTCTGGAGGCCAACCGCGCCGCAAAGCTCAA
CAGCGCGTACAGCGGGCCCCAGGGTTTCACACCGTACGCCGAGAAGGTCA
ACGGTCGATTGGCGCAGCTTGGCTTTGTGATCGGTCTGTTGACAGAGATC
ATCACTGGAAAGGGCATCGACCAACAGATTCTGATCATGTTTTCGCCGCT
CACGCACGTTGCCGCGGTTTTGGCAGGCATTGCGCAATGA
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Coding sequence (CDS) from alignment at NODE_232_length_35106_cov_4.900328:10421..10810+

>Gcaud7548.t1 ID=Gcaud7548.t1|Name=Gcaud7548.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=390bp|location=Sequence derived from alignment at NODE_232_length_35106_cov_4.900328:10421..10810+ (Gracilaria caudata M_176_S67 male)
ATGAACGCGCACACCGCTTTTGCTTCCTCCTTCACCCCAGCTCTCACCAC
CACCACAAACTCCTTCATCTCTCCCGTTACCATCCGCGCCCCGAAATCAC
TCATCGCCGCCCCCCGCATGATCCTGCGGACCAAGGAAAAGCAGACGGTA
GTGCAGTCACCGTACCGGACTCTGGAGGCCAACCGCGCCGCAAAGCTCAA
CAGCGCGTACAGCGGGCCCCAGGGTTTCACACCGTACGCCGAGAAGGTCA
ACGGTCGATTGGCGCAGCTTGGCTTTGTGATCGGTCTGTTGACAGAGATC
ATCACTGGAAAGGGCATCGACCAACAGATTCTGATCATGTTTTCGCCGCT
CACGCACGTTGCCGCGGTTTTGGCAGGCATTGCGCAATGA
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