Gcaud7545.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7545.t1
Unique NameGcaud7545.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_51_length_65224_cov_4.623524contigNODE_51_length_65224_cov_4.623524:64161..65195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF075CT
PFAMsDHHC
Max annot lvl2759|Eukaryota
KEGG rclassRC00741,RC01491,RC01492,RC03042
KEGG koko:K04035,ko:K16675,ko:K18932,ko:K20027,ko:K20030,ko:K20471
KEGG ReactionR06265,R06266,R06267,R10068
KEGG Pathwayko00860,ko01100,ko01110,ko04391,map00860,map01100,map01110,map04391
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005886,GO:0007275,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0012505,GO:0016020,GO:0016049,GO:0021700,GO:0022622,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030154,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035618,GO:0040007,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0060560,GO:0071695,GO:0071944,GO:0080147,GO:0090558,GO:0090627,GO:0097708,GO:0099402,GO:0120025,GO:1905392
Evalue2.37e-49
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota
EC1.14.13.81,2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
COG categoryZ
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7545Gcaud7545Gracilaria caudata M_176_S67 malegeneNODE_51_length_65224_cov_4.623524 64161..65195 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7545.t1.stop1Gcaud7545.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_51_length_65224_cov_4.623524 64161..64163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7545.t1.CDS1Gcaud7545.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_51_length_65224_cov_4.623524 64161..65195 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7545.t1.exon1Gcaud7545.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_51_length_65224_cov_4.623524 64161..65195 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7545.t1.start1Gcaud7545.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_51_length_65224_cov_4.623524 65193..65195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7545.t1Gcaud7545.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_51_length_65224_cov_4.623524 64161..65195 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7545.t1 ID=Gcaud7545.t1|Name=Gcaud7545.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=345bp
MGARTTRYAADSAEAGRSRVWCSGLCMTGPDYRGTLLTLLLVLAIFSAEV
AVSFPYLLSNHAVVGLPLLILLAVSFTITVWSAYLCSTTDPGIVPRSATP
PPSIIAFPNVRERSVIYRGRRVVLRFCDTCRIWRPPRTSHCATCNNCVRR
FDHHCPWLGNDIGLRNYRSYFTFVVFAALSAAVAITTSVLTIHWTTAHFR
AAFPEESYAASIRRSLGFRATAVNLVIIALCFFGLLFTGGLTGFHLYLMS
NNMTTAERFKKRARNSAHVEDDYRGLKSIFFLQCTRRPGSAVTEGFMGPA
YPEEDEFLRLIDAQVEEEAALMNVPVPTIPTAPPRVVSVPVHRI*
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spliced messenger RNA

>Gcaud7545.t1 ID=Gcaud7545.t1|Name=Gcaud7545.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:64161..65195- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCGCGCACCACCCGCTATGCCGCCGACTCCGCCGAGGCCGGTCG
CAGCCGCGTTTGGTGCAGCGGCCTCTGCATGACCGGTCCGGACTACCGCG
GCACCCTCCTCACGCTCCTTCTCGTGCTCGCCATTTTCTCCGCAGAGGTC
GCCGTCTCCTTCCCCTACCTTCTTTCCAACCATGCCGTCGTTGGTCTGCC
CCTGCTCATCCTCCTCGCCGTCTCGTTCACCATCACCGTGTGGTCCGCCT
ATCTTTGCTCCACAACCGATCCAGGAATCGTGCCGCGCTCCGCCACCCCC
CCACCTTCTATTATCGCCTTCCCCAACGTGCGCGAGCGCAGCGTCATATA
CCGCGGCCGCCGCGTCGTGCTCCGTTTCTGCGATACCTGCCGCATTTGGC
GTCCTCCACGAACCTCGCATTGTGCCACCTGCAACAATTGCGTACGACGC
TTCGATCATCATTGCCCGTGGCTGGGCAATGATATCGGGCTTCGCAACTA
CCGCAGCTACTTCACCTTTGTCGTTTTCGCAGCTTTGTCTGCAGCCGTCG
CAATCACCACCTCCGTACTAACTATTCACTGGACAACCGCTCACTTCCGA
GCCGCCTTTCCTGAGGAATCTTATGCCGCCTCAATACGCCGTTCTTTGGG
CTTCCGAGCCACTGCCGTCAATTTGGTCATAATTGCACTGTGCTTCTTTG
GGCTGCTCTTCACTGGCGGATTAACAGGCTTCCATCTCTACCTCATGTCC
AACAACATGACTACCGCAGAGCGTTTTAAGAAACGCGCAAGAAATTCTGC
TCACGTCGAAGACGACTACCGTGGTCTCAAGTCAATATTCTTTTTGCAAT
GCACTCGCCGACCAGGAAGTGCTGTTACGGAAGGCTTTATGGGCCCTGCC
TATCCTGAAGAAGATGAGTTCCTAAGACTTATTGATGCGCAAGTGGAGGA
AGAAGCAGCTCTAATGAATGTTCCCGTGCCCACCATACCCACAGCCCCAC
CGCGTGTCGTATCGGTACCGGTCCATCGCATCTAA
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protein sequence of Gcaud7545.t1

>Gcaud7545.t1 ID=Gcaud7545.t1|Name=Gcaud7545.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=345bp
MGARTTRYAADSAEAGRSRVWCSGLCMTGPDYRGTLLTLLLVLAIFSAEV
AVSFPYLLSNHAVVGLPLLILLAVSFTITVWSAYLCSTTDPGIVPRSATP
PPSIIAFPNVRERSVIYRGRRVVLRFCDTCRIWRPPRTSHCATCNNCVRR
FDHHCPWLGNDIGLRNYRSYFTFVVFAALSAAVAITTSVLTIHWTTAHFR
AAFPEESYAASIRRSLGFRATAVNLVIIALCFFGLLFTGGLTGFHLYLMS
NNMTTAERFKKRARNSAHVEDDYRGLKSIFFLQCTRRPGSAVTEGFMGPA
YPEEDEFLRLIDAQVEEEAALMNVPVPTIPTAPPRVVSVPVHRI*
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mRNA from alignment at NODE_51_length_65224_cov_4.623524:64161..65195-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7545.t1 ID=Gcaud7545.t1|Name=Gcaud7545.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:64161..65195- (Gracilaria caudata M_176_S67 male)
ATGGGAGCGCGCACCACCCGCTATGCCGCCGACTCCGCCGAGGCCGGTCG
CAGCCGCGTTTGGTGCAGCGGCCTCTGCATGACCGGTCCGGACTACCGCG
GCACCCTCCTCACGCTCCTTCTCGTGCTCGCCATTTTCTCCGCAGAGGTC
GCCGTCTCCTTCCCCTACCTTCTTTCCAACCATGCCGTCGTTGGTCTGCC
CCTGCTCATCCTCCTCGCCGTCTCGTTCACCATCACCGTGTGGTCCGCCT
ATCTTTGCTCCACAACCGATCCAGGAATCGTGCCGCGCTCCGCCACCCCC
CCACCTTCTATTATCGCCTTCCCCAACGTGCGCGAGCGCAGCGTCATATA
CCGCGGCCGCCGCGTCGTGCTCCGTTTCTGCGATACCTGCCGCATTTGGC
GTCCTCCACGAACCTCGCATTGTGCCACCTGCAACAATTGCGTACGACGC
TTCGATCATCATTGCCCGTGGCTGGGCAATGATATCGGGCTTCGCAACTA
CCGCAGCTACTTCACCTTTGTCGTTTTCGCAGCTTTGTCTGCAGCCGTCG
CAATCACCACCTCCGTACTAACTATTCACTGGACAACCGCTCACTTCCGA
GCCGCCTTTCCTGAGGAATCTTATGCCGCCTCAATACGCCGTTCTTTGGG
CTTCCGAGCCACTGCCGTCAATTTGGTCATAATTGCACTGTGCTTCTTTG
GGCTGCTCTTCACTGGCGGATTAACAGGCTTCCATCTCTACCTCATGTCC
AACAACATGACTACCGCAGAGCGTTTTAAGAAACGCGCAAGAAATTCTGC
TCACGTCGAAGACGACTACCGTGGTCTCAAGTCAATATTCTTTTTGCAAT
GCACTCGCCGACCAGGAAGTGCTGTTACGGAAGGCTTTATGGGCCCTGCC
TATCCTGAAGAAGATGAGTTCCTAAGACTTATTGATGCGCAAGTGGAGGA
AGAAGCAGCTCTAATGAATGTTCCCGTGCCCACCATACCCACAGCCCCAC
CGCGTGTCGTATCGGTACCGGTCCATCGCATCTAA
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Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:64161..65195-

>Gcaud7545.t1 ID=Gcaud7545.t1|Name=Gcaud7545.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1035bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:64161..65195- (Gracilaria caudata M_176_S67 male)
ATGGGAGCGCGCACCACCCGCTATGCCGCCGACTCCGCCGAGGCCGGTCG
CAGCCGCGTTTGGTGCAGCGGCCTCTGCATGACCGGTCCGGACTACCGCG
GCACCCTCCTCACGCTCCTTCTCGTGCTCGCCATTTTCTCCGCAGAGGTC
GCCGTCTCCTTCCCCTACCTTCTTTCCAACCATGCCGTCGTTGGTCTGCC
CCTGCTCATCCTCCTCGCCGTCTCGTTCACCATCACCGTGTGGTCCGCCT
ATCTTTGCTCCACAACCGATCCAGGAATCGTGCCGCGCTCCGCCACCCCC
CCACCTTCTATTATCGCCTTCCCCAACGTGCGCGAGCGCAGCGTCATATA
CCGCGGCCGCCGCGTCGTGCTCCGTTTCTGCGATACCTGCCGCATTTGGC
GTCCTCCACGAACCTCGCATTGTGCCACCTGCAACAATTGCGTACGACGC
TTCGATCATCATTGCCCGTGGCTGGGCAATGATATCGGGCTTCGCAACTA
CCGCAGCTACTTCACCTTTGTCGTTTTCGCAGCTTTGTCTGCAGCCGTCG
CAATCACCACCTCCGTACTAACTATTCACTGGACAACCGCTCACTTCCGA
GCCGCCTTTCCTGAGGAATCTTATGCCGCCTCAATACGCCGTTCTTTGGG
CTTCCGAGCCACTGCCGTCAATTTGGTCATAATTGCACTGTGCTTCTTTG
GGCTGCTCTTCACTGGCGGATTAACAGGCTTCCATCTCTACCTCATGTCC
AACAACATGACTACCGCAGAGCGTTTTAAGAAACGCGCAAGAAATTCTGC
TCACGTCGAAGACGACTACCGTGGTCTCAAGTCAATATTCTTTTTGCAAT
GCACTCGCCGACCAGGAAGTGCTGTTACGGAAGGCTTTATGGGCCCTGCC
TATCCTGAAGAAGATGAGTTCCTAAGACTTATTGATGCGCAAGTGGAGGA
AGAAGCAGCTCTAATGAATGTTCCCGTGCCCACCATACCCACAGCCCCAC
CGCGTGTCGTATCGGTACCGGTCCATCGCATCTAA
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