Gcaud7544.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7544.t1
Unique Name	Gcaud7544.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	287

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_51_length_65224_cov_4.623524	contig	NODE_51_length_65224_cov_4.623524:62778..63638 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	638303.Thal_0247
Preferred name	thiD
PFAMs	Phos_pyr_kin,TMP-TENI
Max annot lvl	2\|Bacteria
KEGG rclass	RC00002,RC00017,RC00224,RC03251,RC03252,RC03255,RC03397
KEGG ko	ko:K00941,ko:K03147,ko:K14153
KEGG Reaction	R03223,R03471,R03472,R04509,R10712
KEGG Pathway	ko00730,ko01100,map00730,map01100
KEGG Module	M00127
Evalue	1.3e-83
EggNOG OGs	COG0351@1\|root,COG0351@2\|Bacteria
EC	2.5.1.3,2.7.1.49,2.7.4.7,4.1.99.17
Description	phosphomethylpyrimidine kinase activity
COG category	H
BiGG Reaction	iAF987.Gmet_2909
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7544	Gcaud7544	Gracilaria caudata M_176_S67 male	gene	NODE_51_length_65224_cov_4.623524 62778..63638 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7544.t1.start1	Gcaud7544.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_51_length_65224_cov_4.623524 62778..62780 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7544.t1.CDS1	Gcaud7544.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_51_length_65224_cov_4.623524 62778..63638 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7544.t1.exon1	Gcaud7544.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_51_length_65224_cov_4.623524 62778..63638 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7544.t1.stop1	Gcaud7544.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_51_length_65224_cov_4.623524 63636..63638 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7544.t1	Gcaud7544.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_51_length_65224_cov_4.623524 62778..63638 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_51_length_65224_cov_4.623524:62778..63638+
coding sequence from alignment at NODE_51_length_65224_cov_4.623524:62778..63638+

mRNA sequence

>Gcaud7544.t1 ID=Gcaud7544.t1|Name=Gcaud7544.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=287bp
LPSFHVPCVLTVAGSDSGGGAGIQADLKTFTALKVYGASVVTALTAQNTR
GVQDVHVPPLPFIEKQLESVLSDISIKALKTGMLPTPDVIRCTAKAIRRH
DIPFVVVDPVLVATSGDSLVLSETKDALVQSLFPTATIITPNLPEAEKLT
GMCIESPSDLRRACEKLVEMGCRTVLLKGGHVIEKEISREISYEEFGMRV
ASDVFYDGQDFEVFSGPRIETKNTHGTGCTLAAAITSFLAHGENLRNAVR
SAKKFVFCGIKDGIEVGHGNGPLNHMHSIPNYTKDE*

spliced messenger RNA

>Gcaud7544.t1 ID=Gcaud7544.t1|Name=Gcaud7544.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:62778..63638+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCGAGTTTCCATGTTCCGTGTGTGCTGACGGTAGCTGGTTCCGATTC
GGGAGGGGGTGCAGGAATTCAAGCCGATCTGAAAACGTTCACCGCTCTGA
AAGTGTATGGGGCTAGTGTTGTAACTGCTCTCACAGCCCAAAACACTAGA
GGCGTACAGGATGTTCATGTTCCGCCTCTGCCATTCATAGAAAAGCAATT
GGAAAGTGTGCTTTCCGATATCAGCATTAAGGCCCTTAAGACTGGCATGC
TACCAACACCTGATGTGATTAGATGCACCGCGAAAGCAATTCGCCGACAT
GACATCCCTTTCGTTGTGGTAGATCCCGTTCTCGTGGCCACCAGTGGAGA
CTCTTTGGTGCTCAGTGAAACGAAAGATGCACTGGTTCAGAGTTTGTTCC
CCACAGCCACAATCATCACGCCGAATTTGCCCGAGGCAGAAAAGTTAACG
GGAATGTGTATTGAATCACCATCTGATCTGAGACGTGCCTGCGAGAAGCT
TGTGGAGATGGGATGTCGAACTGTTTTGCTTAAGGGTGGGCATGTTATTG
AGAAGGAAATAAGTAGGGAGATCTCATACGAGGAATTTGGCATGCGCGTG
GCATCCGATGTATTCTATGACGGGCAGGACTTCGAAGTGTTTAGCGGACC
TCGAATTGAGACGAAGAACACGCACGGAACAGGGTGCACTCTCGCGGCCG
CAATAACTTCTTTTCTTGCACACGGAGAGAACCTTCGCAATGCGGTGCGT
AGCGCAAAGAAGTTTGTCTTTTGTGGTATCAAAGACGGTATCGAGGTAGG
GCACGGAAACGGACCTCTCAATCATATGCATTCAATACCCAATTACACCA
AGGATGAATGA

protein sequence of Gcaud7544.t1

>Gcaud7544.t1 ID=Gcaud7544.t1|Name=Gcaud7544.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
LPSFHVPCVLTVAGSDSGGGAGIQADLKTFTALKVYGASVVTALTAQNTR
GVQDVHVPPLPFIEKQLESVLSDISIKALKTGMLPTPDVIRCTAKAIRRH
DIPFVVVDPVLVATSGDSLVLSETKDALVQSLFPTATIITPNLPEAEKLT
GMCIESPSDLRRACEKLVEMGCRTVLLKGGHVIEKEISREISYEEFGMRV
ASDVFYDGQDFEVFSGPRIETKNTHGTGCTLAAAITSFLAHGENLRNAVR
SAKKFVFCGIKDGIEVGHGNGPLNHMHSIPNYTKDE*

mRNA from alignment at NODE_51_length_65224_cov_4.623524:62778..63638+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7544.t1 ID=Gcaud7544.t1|Name=Gcaud7544.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:62778..63638+ (Gracilaria caudata M_176_S67 male)
TTGCCGAGTTTCCATGTTCCGTGTGTGCTGACGGTAGCTGGTTCCGATTC
GGGAGGGGGTGCAGGAATTCAAGCCGATCTGAAAACGTTCACCGCTCTGA
AAGTGTATGGGGCTAGTGTTGTAACTGCTCTCACAGCCCAAAACACTAGA
GGCGTACAGGATGTTCATGTTCCGCCTCTGCCATTCATAGAAAAGCAATT
GGAAAGTGTGCTTTCCGATATCAGCATTAAGGCCCTTAAGACTGGCATGC
TACCAACACCTGATGTGATTAGATGCACCGCGAAAGCAATTCGCCGACAT
GACATCCCTTTCGTTGTGGTAGATCCCGTTCTCGTGGCCACCAGTGGAGA
CTCTTTGGTGCTCAGTGAAACGAAAGATGCACTGGTTCAGAGTTTGTTCC
CCACAGCCACAATCATCACGCCGAATTTGCCCGAGGCAGAAAAGTTAACG
GGAATGTGTATTGAATCACCATCTGATCTGAGACGTGCCTGCGAGAAGCT
TGTGGAGATGGGATGTCGAACTGTTTTGCTTAAGGGTGGGCATGTTATTG
AGAAGGAAATAAGTAGGGAGATCTCATACGAGGAATTTGGCATGCGCGTG
GCATCCGATGTATTCTATGACGGGCAGGACTTCGAAGTGTTTAGCGGACC
TCGAATTGAGACGAAGAACACGCACGGAACAGGGTGCACTCTCGCGGCCG
CAATAACTTCTTTTCTTGCACACGGAGAGAACCTTCGCAATGCGGTGCGT
AGCGCAAAGAAGTTTGTCTTTTGTGGTATCAAAGACGGTATCGAGGTAGG
GCACGGAAACGGACCTCTCAATCATATGCATTCAATACCCAATTACACCA
AGGATGAATGA

Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:62778..63638+

>Gcaud7544.t1 ID=Gcaud7544.t1|Name=Gcaud7544.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=861bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:62778..63638+ (Gracilaria caudata M_176_S67 male)
TTGCCGAGTTTCCATGTTCCGTGTGTGCTGACGGTAGCTGGTTCCGATTC
GGGAGGGGGTGCAGGAATTCAAGCCGATCTGAAAACGTTCACCGCTCTGA
AAGTGTATGGGGCTAGTGTTGTAACTGCTCTCACAGCCCAAAACACTAGA
GGCGTACAGGATGTTCATGTTCCGCCTCTGCCATTCATAGAAAAGCAATT
GGAAAGTGTGCTTTCCGATATCAGCATTAAGGCCCTTAAGACTGGCATGC
TACCAACACCTGATGTGATTAGATGCACCGCGAAAGCAATTCGCCGACAT
GACATCCCTTTCGTTGTGGTAGATCCCGTTCTCGTGGCCACCAGTGGAGA
CTCTTTGGTGCTCAGTGAAACGAAAGATGCACTGGTTCAGAGTTTGTTCC
CCACAGCCACAATCATCACGCCGAATTTGCCCGAGGCAGAAAAGTTAACG
GGAATGTGTATTGAATCACCATCTGATCTGAGACGTGCCTGCGAGAAGCT
TGTGGAGATGGGATGTCGAACTGTTTTGCTTAAGGGTGGGCATGTTATTG
AGAAGGAAATAAGTAGGGAGATCTCATACGAGGAATTTGGCATGCGCGTG
GCATCCGATGTATTCTATGACGGGCAGGACTTCGAAGTGTTTAGCGGACC
TCGAATTGAGACGAAGAACACGCACGGAACAGGGTGCACTCTCGCGGCCG
CAATAACTTCTTTTCTTGCACACGGAGAGAACCTTCGCAATGCGGTGCGT
AGCGCAAAGAAGTTTGTCTTTTGTGGTATCAAAGACGGTATCGAGGTAGG
GCACGGAAACGGACCTCTCAATCATATGCATTCAATACCCAATTACACCA
AGGATGAATGA