Gcaud7540.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7540.t1
Unique Name	Gcaud7540.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	644

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_51_length_65224_cov_4.623524	contig	NODE_51_length_65224_cov_4.623524:53262..55193 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX45057
PFAMs	eIF2A
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15026
Evalue	1.66e-107
EggNOG OGs	COG5354@1\|root,KOG2315@2759\|Eukaryota
Description	ribosome binding
COG category	J
BRITE	ko00000,ko03012,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7540	Gcaud7540	Gracilaria caudata M_176_S67 male	gene	NODE_51_length_65224_cov_4.623524 53262..55193 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7540.t1.start1	Gcaud7540.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_51_length_65224_cov_4.623524 53262..53264 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7540.t1.CDS1	Gcaud7540.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_51_length_65224_cov_4.623524 53262..55193 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7540.t1.exon1	Gcaud7540.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_51_length_65224_cov_4.623524 53262..55193 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7540.t1.stop1	Gcaud7540.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_51_length_65224_cov_4.623524 55191..55193 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7540.t1	Gcaud7540.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_51_length_65224_cov_4.623524 53262..55193 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_51_length_65224_cov_4.623524:53262..55193+
coding sequence from alignment at NODE_51_length_65224_cov_4.623524:53262..55193+

mRNA sequence

>Gcaud7540.t1 ID=Gcaud7540.t1|Name=Gcaud7540.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=644bp
MASTKQATKETVHTRPLGILVREKTRAFITQFPYQEGTESEDRRSIPESR
DSQFAPNGDYFFSIEGENQEAVIRDSVTTQVICSCGGLKDTETPLKVDFA
AFSPRGTYLLTWCRPVSGVSVRNLVAYNAITGQRLGGFHQKVFHAGFWPT
IQWSDDESIAAHCVTNNVHFYKSDALDKPPYAILRVPGISKFSLSPGSAP
YTIATFMPSLKGAPGKLCVFKHPDEGGEELASRSTFNADSVSFKWNSKGE
ALLTLVSTNIDNEGKSYYGNSEVYFMDNLGVFSQRVELPQQGPTYSAAWS
PTGNEFIIIYGYMPARATMFNEKCEPVFDFGTGPRNEIHFSPHGRFVALG
GFGNLAGAVEFWDKNKMTLVGRAQMPCTTMCSWSPCSRYFLGATTFPRLR
VDNGFKVVRFDGKLVHEQKLGDGHLYQAAFKPALRGVYADPKFTMDDMIG
GTVQSSDQSSAANGGTKQSMGVYRPPSSRGQGSTLKLHHHLAAGKVDKNA
FLSSGIGNTASAPRSSGGKKIVPGMDPDLMDSGPSKAAIARRKKKERERQ
QKAKQAVEPTPTEQSNSANVDPENITSVEDAEKRAKRLRKKLRGIDALEA
NKTEGKELNQEQEEKLKTKSVVQDELEAVEKRIAELSLISDTI*

spliced messenger RNA

>Gcaud7540.t1 ID=Gcaud7540.t1|Name=Gcaud7540.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1932bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:53262..55193+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCAACAAAACAAGCCACCAAAGAAACCGTGCATACTCGGCCGCT
GGGGATTCTCGTTAGAGAAAAGACTCGCGCGTTCATCACTCAATTCCCCT
ACCAAGAAGGCACCGAAAGCGAAGACCGACGATCAATTCCGGAAAGCAGG
GACTCGCAGTTTGCCCCTAATGGAGACTACTTTTTCTCTATTGAAGGCGA
AAACCAAGAAGCTGTGATTCGCGACAGTGTGACAACACAGGTGATTTGCT
CCTGTGGCGGATTGAAGGACACGGAAACACCCCTCAAGGTTGATTTCGCC
GCCTTTTCTCCTCGTGGAACATATCTCCTCACTTGGTGTCGCCCAGTGAG
TGGCGTGTCCGTTCGCAATTTGGTTGCTTACAATGCCATAACCGGTCAAC
GTTTGGGAGGTTTCCACCAGAAAGTTTTTCACGCCGGGTTCTGGCCAACG
ATTCAATGGAGCGATGATGAGTCAATAGCTGCTCATTGTGTGACCAACAA
CGTGCACTTCTACAAATCTGATGCCTTGGATAAGCCTCCATATGCGATTT
TGCGTGTTCCGGGAATCTCAAAGTTTTCTTTGAGTCCTGGATCTGCTCCC
TATACTATCGCCACATTTATGCCGAGTCTGAAGGGTGCTCCAGGAAAGCT
TTGCGTTTTTAAGCATCCTGACGAAGGTGGCGAAGAGCTTGCTTCCCGCT
CGACATTCAATGCCGATTCCGTCTCTTTCAAATGGAATTCCAAAGGAGAG
GCATTGTTAACCTTGGTCAGCACAAATATCGACAATGAGGGCAAGAGCTA
TTACGGAAACAGCGAAGTGTACTTCATGGACAATCTTGGCGTATTCAGTC
AGAGGGTGGAATTGCCCCAACAAGGGCCGACCTATAGCGCCGCATGGAGT
CCTACCGGTAACGAGTTCATAATAATTTACGGGTACATGCCAGCGCGTGC
TACTATGTTTAACGAAAAGTGTGAGCCGGTGTTTGACTTTGGCACTGGCC
CACGAAATGAGATCCATTTCTCACCGCACGGACGCTTTGTTGCCCTTGGT
GGCTTCGGCAATCTCGCTGGCGCTGTAGAGTTCTGGGATAAGAACAAAAT
GACTCTAGTTGGCCGAGCGCAAATGCCGTGCACTACAATGTGCAGTTGGT
CCCCATGTTCGCGATACTTCCTAGGAGCTACTACTTTTCCTAGGCTCCGT
GTCGACAACGGCTTCAAAGTGGTTAGATTTGACGGAAAACTGGTTCACGA
ACAGAAGCTGGGAGACGGACATCTATATCAAGCCGCATTCAAGCCCGCCT
TGCGAGGTGTATACGCTGATCCGAAGTTCACAATGGATGACATGATCGGA
GGTACTGTTCAGTCATCAGATCAGTCGAGTGCAGCTAATGGTGGCACCAA
ACAGAGCATGGGTGTTTACCGTCCGCCTAGTAGTAGAGGGCAGGGTTCTA
CTCTAAAGCTCCATCATCACCTTGCTGCCGGGAAAGTTGACAAGAACGCC
TTCCTCTCCAGCGGCATTGGTAACACTGCTTCTGCCCCTCGCTCTTCGGG
AGGTAAGAAGATTGTCCCTGGTATGGATCCGGACTTAATGGATAGCGGGC
CTTCAAAGGCGGCTATTGCACGTCGAAAAAAGAAGGAGCGCGAACGTCAG
CAAAAGGCGAAACAAGCGGTAGAGCCGACACCAACAGAGCAGAGCAATTC
TGCCAATGTGGATCCCGAGAACATAACAAGCGTAGAAGATGCTGAAAAGC
GTGCTAAGAGACTTCGAAAGAAACTCCGTGGTATTGACGCATTGGAGGCA
AATAAGACCGAAGGTAAGGAGCTCAACCAAGAGCAGGAGGAAAAGCTGAA
GACCAAATCGGTTGTACAAGACGAGCTTGAAGCTGTGGAGAAGAGAATTG
CTGAGCTGTCTCTCATAAGCGACACCATATAA

protein sequence of Gcaud7540.t1

>Gcaud7540.t1 ID=Gcaud7540.t1|Name=Gcaud7540.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=644bp
MASTKQATKETVHTRPLGILVREKTRAFITQFPYQEGTESEDRRSIPESR
DSQFAPNGDYFFSIEGENQEAVIRDSVTTQVICSCGGLKDTETPLKVDFA
AFSPRGTYLLTWCRPVSGVSVRNLVAYNAITGQRLGGFHQKVFHAGFWPT
IQWSDDESIAAHCVTNNVHFYKSDALDKPPYAILRVPGISKFSLSPGSAP
YTIATFMPSLKGAPGKLCVFKHPDEGGEELASRSTFNADSVSFKWNSKGE
ALLTLVSTNIDNEGKSYYGNSEVYFMDNLGVFSQRVELPQQGPTYSAAWS
PTGNEFIIIYGYMPARATMFNEKCEPVFDFGTGPRNEIHFSPHGRFVALG
GFGNLAGAVEFWDKNKMTLVGRAQMPCTTMCSWSPCSRYFLGATTFPRLR
VDNGFKVVRFDGKLVHEQKLGDGHLYQAAFKPALRGVYADPKFTMDDMIG
GTVQSSDQSSAANGGTKQSMGVYRPPSSRGQGSTLKLHHHLAAGKVDKNA
FLSSGIGNTASAPRSSGGKKIVPGMDPDLMDSGPSKAAIARRKKKERERQ
QKAKQAVEPTPTEQSNSANVDPENITSVEDAEKRAKRLRKKLRGIDALEA
NKTEGKELNQEQEEKLKTKSVVQDELEAVEKRIAELSLISDTI*

mRNA from alignment at NODE_51_length_65224_cov_4.623524:53262..55193+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7540.t1 ID=Gcaud7540.t1|Name=Gcaud7540.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1932bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:53262..55193+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCAACAAAACAAGCCACCAAAGAAACCGTGCATACTCGGCCGCT
GGGGATTCTCGTTAGAGAAAAGACTCGCGCGTTCATCACTCAATTCCCCT
ACCAAGAAGGCACCGAAAGCGAAGACCGACGATCAATTCCGGAAAGCAGG
GACTCGCAGTTTGCCCCTAATGGAGACTACTTTTTCTCTATTGAAGGCGA
AAACCAAGAAGCTGTGATTCGCGACAGTGTGACAACACAGGTGATTTGCT
CCTGTGGCGGATTGAAGGACACGGAAACACCCCTCAAGGTTGATTTCGCC
GCCTTTTCTCCTCGTGGAACATATCTCCTCACTTGGTGTCGCCCAGTGAG
TGGCGTGTCCGTTCGCAATTTGGTTGCTTACAATGCCATAACCGGTCAAC
GTTTGGGAGGTTTCCACCAGAAAGTTTTTCACGCCGGGTTCTGGCCAACG
ATTCAATGGAGCGATGATGAGTCAATAGCTGCTCATTGTGTGACCAACAA
CGTGCACTTCTACAAATCTGATGCCTTGGATAAGCCTCCATATGCGATTT
TGCGTGTTCCGGGAATCTCAAAGTTTTCTTTGAGTCCTGGATCTGCTCCC
TATACTATCGCCACATTTATGCCGAGTCTGAAGGGTGCTCCAGGAAAGCT
TTGCGTTTTTAAGCATCCTGACGAAGGTGGCGAAGAGCTTGCTTCCCGCT
CGACATTCAATGCCGATTCCGTCTCTTTCAAATGGAATTCCAAAGGAGAG
GCATTGTTAACCTTGGTCAGCACAAATATCGACAATGAGGGCAAGAGCTA
TTACGGAAACAGCGAAGTGTACTTCATGGACAATCTTGGCGTATTCAGTC
AGAGGGTGGAATTGCCCCAACAAGGGCCGACCTATAGCGCCGCATGGAGT
CCTACCGGTAACGAGTTCATAATAATTTACGGGTACATGCCAGCGCGTGC
TACTATGTTTAACGAAAAGTGTGAGCCGGTGTTTGACTTTGGCACTGGCC
CACGAAATGAGATCCATTTCTCACCGCACGGACGCTTTGTTGCCCTTGGT
GGCTTCGGCAATCTCGCTGGCGCTGTAGAGTTCTGGGATAAGAACAAAAT
GACTCTAGTTGGCCGAGCGCAAATGCCGTGCACTACAATGTGCAGTTGGT
CCCCATGTTCGCGATACTTCCTAGGAGCTACTACTTTTCCTAGGCTCCGT
GTCGACAACGGCTTCAAAGTGGTTAGATTTGACGGAAAACTGGTTCACGA
ACAGAAGCTGGGAGACGGACATCTATATCAAGCCGCATTCAAGCCCGCCT
TGCGAGGTGTATACGCTGATCCGAAGTTCACAATGGATGACATGATCGGA
GGTACTGTTCAGTCATCAGATCAGTCGAGTGCAGCTAATGGTGGCACCAA
ACAGAGCATGGGTGTTTACCGTCCGCCTAGTAGTAGAGGGCAGGGTTCTA
CTCTAAAGCTCCATCATCACCTTGCTGCCGGGAAAGTTGACAAGAACGCC
TTCCTCTCCAGCGGCATTGGTAACACTGCTTCTGCCCCTCGCTCTTCGGG
AGGTAAGAAGATTGTCCCTGGTATGGATCCGGACTTAATGGATAGCGGGC
CTTCAAAGGCGGCTATTGCACGTCGAAAAAAGAAGGAGCGCGAACGTCAG
CAAAAGGCGAAACAAGCGGTAGAGCCGACACCAACAGAGCAGAGCAATTC
TGCCAATGTGGATCCCGAGAACATAACAAGCGTAGAAGATGCTGAAAAGC
GTGCTAAGAGACTTCGAAAGAAACTCCGTGGTATTGACGCATTGGAGGCA
AATAAGACCGAAGGTAAGGAGCTCAACCAAGAGCAGGAGGAAAAGCTGAA
GACCAAATCGGTTGTACAAGACGAGCTTGAAGCTGTGGAGAAGAGAATTG
CTGAGCTGTCTCTCATAAGCGACACCATATAA

Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:53262..55193+

>Gcaud7540.t1 ID=Gcaud7540.t1|Name=Gcaud7540.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1932bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:53262..55193+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCAACAAAACAAGCCACCAAAGAAACCGTGCATACTCGGCCGCT
GGGGATTCTCGTTAGAGAAAAGACTCGCGCGTTCATCACTCAATTCCCCT
ACCAAGAAGGCACCGAAAGCGAAGACCGACGATCAATTCCGGAAAGCAGG
GACTCGCAGTTTGCCCCTAATGGAGACTACTTTTTCTCTATTGAAGGCGA
AAACCAAGAAGCTGTGATTCGCGACAGTGTGACAACACAGGTGATTTGCT
CCTGTGGCGGATTGAAGGACACGGAAACACCCCTCAAGGTTGATTTCGCC
GCCTTTTCTCCTCGTGGAACATATCTCCTCACTTGGTGTCGCCCAGTGAG
TGGCGTGTCCGTTCGCAATTTGGTTGCTTACAATGCCATAACCGGTCAAC
GTTTGGGAGGTTTCCACCAGAAAGTTTTTCACGCCGGGTTCTGGCCAACG
ATTCAATGGAGCGATGATGAGTCAATAGCTGCTCATTGTGTGACCAACAA
CGTGCACTTCTACAAATCTGATGCCTTGGATAAGCCTCCATATGCGATTT
TGCGTGTTCCGGGAATCTCAAAGTTTTCTTTGAGTCCTGGATCTGCTCCC
TATACTATCGCCACATTTATGCCGAGTCTGAAGGGTGCTCCAGGAAAGCT
TTGCGTTTTTAAGCATCCTGACGAAGGTGGCGAAGAGCTTGCTTCCCGCT
CGACATTCAATGCCGATTCCGTCTCTTTCAAATGGAATTCCAAAGGAGAG
GCATTGTTAACCTTGGTCAGCACAAATATCGACAATGAGGGCAAGAGCTA
TTACGGAAACAGCGAAGTGTACTTCATGGACAATCTTGGCGTATTCAGTC
AGAGGGTGGAATTGCCCCAACAAGGGCCGACCTATAGCGCCGCATGGAGT
CCTACCGGTAACGAGTTCATAATAATTTACGGGTACATGCCAGCGCGTGC
TACTATGTTTAACGAAAAGTGTGAGCCGGTGTTTGACTTTGGCACTGGCC
CACGAAATGAGATCCATTTCTCACCGCACGGACGCTTTGTTGCCCTTGGT
GGCTTCGGCAATCTCGCTGGCGCTGTAGAGTTCTGGGATAAGAACAAAAT
GACTCTAGTTGGCCGAGCGCAAATGCCGTGCACTACAATGTGCAGTTGGT
CCCCATGTTCGCGATACTTCCTAGGAGCTACTACTTTTCCTAGGCTCCGT
GTCGACAACGGCTTCAAAGTGGTTAGATTTGACGGAAAACTGGTTCACGA
ACAGAAGCTGGGAGACGGACATCTATATCAAGCCGCATTCAAGCCCGCCT
TGCGAGGTGTATACGCTGATCCGAAGTTCACAATGGATGACATGATCGGA
GGTACTGTTCAGTCATCAGATCAGTCGAGTGCAGCTAATGGTGGCACCAA
ACAGAGCATGGGTGTTTACCGTCCGCCTAGTAGTAGAGGGCAGGGTTCTA
CTCTAAAGCTCCATCATCACCTTGCTGCCGGGAAAGTTGACAAGAACGCC
TTCCTCTCCAGCGGCATTGGTAACACTGCTTCTGCCCCTCGCTCTTCGGG
AGGTAAGAAGATTGTCCCTGGTATGGATCCGGACTTAATGGATAGCGGGC
CTTCAAAGGCGGCTATTGCACGTCGAAAAAAGAAGGAGCGCGAACGTCAG
CAAAAGGCGAAACAAGCGGTAGAGCCGACACCAACAGAGCAGAGCAATTC
TGCCAATGTGGATCCCGAGAACATAACAAGCGTAGAAGATGCTGAAAAGC
GTGCTAAGAGACTTCGAAAGAAACTCCGTGGTATTGACGCATTGGAGGCA
AATAAGACCGAAGGTAAGGAGCTCAACCAAGAGCAGGAGGAAAAGCTGAA
GACCAAATCGGTTGTACAAGACGAGCTTGAAGCTGTGGAGAAGAGAATTG
CTGAGCTGTCTCTCATAAGCGACACCATATAA